prot_Ecto-sp13_S_contig16088.4449.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig16088.4449.1
Unique Nameprot_Ecto-sp13_S_contig16088.4449.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length539
Homology
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BLAST of mRNA_Ecto-sp13_S_contig16088.4449.1 vs. uniprot
Match: D7FYC3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FYC3_ECTSI)

HSP 1 Score: 933 bits (2412), Expect = 0.000e+0
Identity = 486/538 (90.33%), Postives = 499/538 (92.75%), Query Frame = 0 
Query:    1 VWRSNSNVCRLFRLPPLVYDGDGGKRQTVDEDNNDGGVESSRTGTAAASSGFESADKTGIGSEGSLAAKYDICRLPFVEWVLPSPITVLAVCEEEVMGEAQDDGREKGGGWSCCGGADATAPLVAIGTENGGVYLGDAALGTTRAGLSRHRARVTALAFHGKRFLVSGSDDEMIQIHHLTVTDPTGAGGDRCCVGGTPRLRCLHDARGSGIVRLACFREIPLAVAEDTSRRVVVYDLLSGSMLGVLALKDDAIASVAADGPDRSGDGAAVSHETDVPKAGIVWSEGGEYIAAIMPQKQDTSILSPTRSDSGGETLGVWSASDLMWELSPGMRAMVGEERPLSSRDVAELFYGLPPRERKDPDFMLQNMSHQYDPRRGDTTPPTTGTTNPDPTSTRTKAGGRSSRGTGSGSGRADRSNTPQRPAARDGVAGKKAPSNTVSTNATRNPITRTPPHYQRPTTLTERNVACLLGAGGRGGPMGGVLACTGEGGAVGKDGPAPWGMEVGAAARVKRYMAARHTDRAARQARLEYVTRNLLQAL 538
            VWRSNSNVCRLFRLPP VYDGDGG+RQTV+  NNDGGVE SRTGT AASSGFESADKTGIGSEGSLAAKYDI RLP VEWVLPSPITVLAVCEEE  GEAQDDGREKGGGWSCCGGADA APLVAIGTENGGVYLGDAALGTTRAGLSRHRARVTALAFHGKRFLVSGSDDEMIQIHHLTV DPTGAGGDR CVGGTPRLRCLHDARGSGIVRLACFRE+PLAVAEDTS RVVVYDLLSG+MLGVLALKDDAI SVAAD PDR+GDGAAVSHET  PKAGI+WSEGGE +A +MPQ+Q+TS+LSPTRSDSGGETLGVWSASDLMWELSPGMRAMVGEERPLS RDVAELFYGL PR RKDP+ MLQNMSHQYDP RGDT P TTGTTNPDP STRTKAGGRSSRGTGSGSGR DRSNTPQR A RD VA KKAPSNTVSTN TRNP TRTPPHYQ PTTLTERNVA LLGAGGRGGPMGGVLACTGEGGAVGKDGPAPWGMEVGAAARVKRYM ARHT+RA RQARLE VTRNLLQAL
Sbjct:  621 VWRSNSNVCRLFRLPPPVYDGDGGQRQTVEGGNNDGGVELSRTGTVAASSGFESADKTGIGSEGSLAAKYDISRLPSVEWVLPSPITVLAVCEEETGGEAQDDGREKGGGWSCCGGADAPAPLVAIGTENGGVYLGDAALGTTRAGLSRHRARVTALAFHGKRFLVSGSDDEMIQIHHLTVADPTGAGGDRRCVGGTPRLRCLHDARGSGIVRLACFREMPLAVAEDTSGRVVVYDLLSGTMLGVLALKDDAITSVAADRPDRNGDGAAVSHETVAPKAGIIWSEGGECMAVVMPQEQETSVLSPTRSDSGGETLGVWSASDLMWELSPGMRAMVGEERPLSPRDVAELFYGLLPRYRKDPEIMLQNMSHQYDPGRGDTAPLTTGTTNPDPASTRTKAGGRSSRGTGSGSGRLDRSNTPQRAAGRDRVAAKKAPSNTVSTNVTRNPTTRTPPHYQHPTTLTERNVARLLGAGGRGGPMGGVLACTGEGGAVGKDGPAPWGMEVGAAARVKRYMEARHTERAVRQARLENVTRNLLQAL 1158
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16088.4449.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FYC3_ECTSI0.000e+090.33Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR015943WD40/YVTN repeat-like-containing domain superfamilyGENE3D2.130.10.10coord: 102..276
e-value: 2.8E-9
score: 38.0
IPR036322WD40-repeat-containing domain superfamilySUPERFAMILY50978WD40 repeat-likecoord: 120..260

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig16088contigEcto-sp13_S_contig16088:2..3196 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig16088.4449.1mRNA_Ecto-sp13_S_contig16088.4449.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig16088 2..3196 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig16088.4449.1 ID=prot_Ecto-sp13_S_contig16088.4449.1|Name=mRNA_Ecto-sp13_S_contig16088.4449.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=539bp
VWRSNSNVCRLFRLPPLVYDGDGGKRQTVDEDNNDGGVESSRTGTAAASS
GFESADKTGIGSEGSLAAKYDICRLPFVEWVLPSPITVLAVCEEEVMGEA
QDDGREKGGGWSCCGGADATAPLVAIGTENGGVYLGDAALGTTRAGLSRH
RARVTALAFHGKRFLVSGSDDEMIQIHHLTVTDPTGAGGDRCCVGGTPRL
RCLHDARGSGIVRLACFREIPLAVAEDTSRRVVVYDLLSGSMLGVLALKD
DAIASVAADGPDRSGDGAAVSHETDVPKAGIVWSEGGEYIAAIMPQKQDT
SILSPTRSDSGGETLGVWSASDLMWELSPGMRAMVGEERPLSSRDVAELF
YGLPPRERKDPDFMLQNMSHQYDPRRGDTTPPTTGTTNPDPTSTRTKAGG
RSSRGTGSGSGRADRSNTPQRPAARDGVAGKKAPSNTVSTNATRNPITRT
PPHYQRPTTLTERNVACLLGAGGRGGPMGGVLACTGEGGAVGKDGPAPWG
MEVGAAARVKRYMAARHTDRAARQARLEYVTRNLLQAL*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR015943WD40/YVTN_repeat-like_dom_sf
IPR036322WD40_repeat_dom_sf