mRNA_Ecto-sp13_S_contig16082.4447.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig16082.4447.1
Unique NamemRNA_Ecto-sp13_S_contig16082.4447.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig16082.4447.1 vs. uniprot
Match: D8LMV7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMV7_ECTSI)

HSP 1 Score: 85.9 bits (211), Expect = 9.220e-18
Identity = 61/91 (67.03%), Postives = 62/91 (68.13%), Query Frame = 1 
Query:    1 MHLLLFHEAAQTESRSDDSHSHSTGSSANPSNPSSTNPSKGTGPTNSPXXXXXXTRSGNAGQENGVSGDGTQSKTELGVSGTTGMGQRHSM 273
            MHLLLFHEAAQTESRSDDS S+S G                       XXXX  TRSGNAGQENGV G GTQSKTELGVSGTTGMGQRHSM
Sbjct:   45 MHLLLFHEAAQTESRSDDSSSYSAGXXXXXXXXXXXXXXXXXXXXXXXXXXXGSTRSGNAGQENGVGGAGTQSKTELGVSGTTGMGQRHSM 135
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16082.4447.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LMV7_ECTSI9.220e-1867.03Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig16082contigEcto-sp13_S_contig16082:2081..2353 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size275
Hectar predicted targeting categoryother localisation
Exons1
Cds size273
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462849.1497889-CDS-Ecto-sp13_S_contig16082:2080..23531681462849.1497889-CDS-Ecto-sp13_S_contig16082:2080..2353Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16082 2081..2353 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig16082.4447.1prot_Ecto-sp13_S_contig16082.4447.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig16082 2081..2353 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig16082.4447.1

>prot_Ecto-sp13_S_contig16082.4447.1 ID=prot_Ecto-sp13_S_contig16082.4447.1|Name=mRNA_Ecto-sp13_S_contig16082.4447.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=91bp
MHLLLFHEAAQTESRSDDSHSHSTGSSANPSNPSSTNPSKGTGPTNSPAS
PNGSTRSGNAGQENGVSGDGTQSKTELGVSGTTGMGQRHSM
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mRNA from alignment at Ecto-sp13_S_contig16082:2081..2353+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig16082.4447.1 ID=mRNA_Ecto-sp13_S_contig16082.4447.1|Name=mRNA_Ecto-sp13_S_contig16082.4447.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=273bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16082:2081..2353+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCACCTTCTGCTATTCCACGAAGCGGCGCAGACAGAATCCAGAAGTGA
CGACAGCCACAGCCACTCGACCGGCAGTTCCGCCAACCCCAGCAACCCCT
CGTCAACGAATCCTTCAAAAGGAACGGGTCCGACAAACTCTCCGGCGTCG
CCCAACGGGTCAACAAGATCGGGCAACGCCGGTCAGGAGAATGGCGTGAG
CGGTGACGGTACGCAGAGCAAAACCGAACTTGGAGTCAGCGGTACAACGG
GCATGGGCCAGCGACATTCCATG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16082:2081..2353+

>mRNA_Ecto-sp13_S_contig16082.4447.1 ID=mRNA_Ecto-sp13_S_contig16082.4447.1|Name=mRNA_Ecto-sp13_S_contig16082.4447.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=273bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16082:2081..2353+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCACCTTCTGCTATTCCACGAAGCGGCGCAGACAGAATCCAGAAGTGA
CGACAGCCACAGCCACTCGACCGGCAGTTCCGCCAACCCCAGCAACCCCT
CGTCAACGAATCCTTCAAAAGGAACGGGTCCGACAAACTCTCCGGCGTCG
CCCAACGGGTCAACAAGATCGGGCAACGCCGGTCAGGAGAATGGCGTGAG
CGGTGACGGTACGCAGAGCAAAACCGAACTTGGAGTCAGCGGTACAACGG
GCATGGGCCAGCGACATTCCATG
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