mRNA_Ecto-sp13_S_contig16.4397.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig16.4397.1
Unique NamemRNA_Ecto-sp13_S_contig16.4397.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16.4397.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig16contigEcto-sp13_S_contig16:27375..28528 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size589
Hectar predicted targeting categoryother localisation
Exons3
Cds size504
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462845.4153085-UTR-Ecto-sp13_S_contig16:27374..274571681462845.4153085-UTR-Ecto-sp13_S_contig16:27374..27457Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig16 27375..27457 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462845.4320328-CDS-Ecto-sp13_S_contig16:27457..276851681462845.4320328-CDS-Ecto-sp13_S_contig16:27457..27685Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16 27458..27685 -
1681462845.4429529-CDS-Ecto-sp13_S_contig16:27725..279291681462845.4429529-CDS-Ecto-sp13_S_contig16:27725..27929Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16 27726..27929 -
1681462845.4552848-CDS-Ecto-sp13_S_contig16:28456..285281681462845.4552848-CDS-Ecto-sp13_S_contig16:28456..28528Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16 28457..28528 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig16.4397.1prot_Ecto-sp13_S_contig16.4397.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig16 27458..28528 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig16.4397.1

>prot_Ecto-sp13_S_contig16.4397.1 ID=prot_Ecto-sp13_S_contig16.4397.1|Name=mRNA_Ecto-sp13_S_contig16.4397.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=168bp
FVPCLLIDEKRKDVARFDLGCCWKETTEPGRIISGPPRVHSRRDSFVLEQ
LSDTDHPASIADETWNDNGDEARSPPCSRAAPFVGKTVPTQPNYPFPSRV
PHPGFGTVGVKEEQAETTGKIAFRRNDLMFTNLAHDTRPKIVSLPPRPKE
RRPRADFECLRLSRRSP*
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mRNA from alignment at Ecto-sp13_S_contig16:27375..28528-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig16.4397.1 ID=mRNA_Ecto-sp13_S_contig16.4397.1|Name=mRNA_Ecto-sp13_S_contig16.4397.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1154bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16:27375..28528- (Ectocarpus species13 EcNAP12_S_4_19m)
TTTGTTCCTTGCTTGCTCATCGACGAGAAGCGGAAGGACGTCGCAAGATT
CGATCTTGGGTGTTGCTGGAAGGTAAACAAGAGATCTACGCGCTGGTGAA
CCATCAAACATGCCTTTACCTACCAAGAGTTATCGTACTGTGAAATGAAA
AAGAGCGTTGTGCTCATATCCTCTTTTTCTTCAGACCATACATGAACCGT
TCTTGCTGTGAGGGCATACGAGTATTTTTTTCGAATGCCCCAGCAGGGCG
TGCGATGCAACAACGCAAGCCACCCTCGCACACTTGCTCTGTGAAAATGA
CATGACGAGTTGAAAGAGTGTGGGCTCCTCGTTAGGCGGATCGTCAAGGA
TTGATGACGTCCACGCGAAGGGGTCGGCCGGCGAGGGCTCGCCTTCTGGA
ATTCATAGGCAACAACGTCAGTTTCATGTACCCTCAGAGGGTCTCATGGC
CGGCCAAACAAAATGGGTTTCTTTGTCGAGGCAAAATTGAAGCAACTGAA
CGTCGATGCTGCCTAGTGCCGCCTAATAGTCAAACTCTGTATTTCCTCCT
TTACTCGTTTCCTGTCACCGCCCTTGGGAAATGGGGAAAACTGTGGCAGG
AAACTACCGAGCCCGGGAGAATCATCAGCGGACCGCCAAGAGTTCATAGT
CGGCGTGATTCCTTTGTGCTTGAGCAACTCTCCGACACGGATCACCCAGC
TTCCATTGCCGACGAAACCTGGAACGACAATGGTGATGAGGCGCGCAGCC
CTCCTTGTTCCCGAGCCGCTCCCTTCGTGGGAAAAACTGTTCCAACCCAG
CCGTCATCGTCTTGCAGGTATTGCACAAGTCATGCAATGGGCGAACTATC
CCTTCCCTTCCCGCGTTCCCCACCCCGGGTTCGGAACGGTGGGAGTGAAA
GAGGAGCAGGCCGAAACAACGGGCAAGATTGCCTTCAGACGAAACGACCT
GATGTTCACCAACCTCGCTCACGACACGAGGCCAAAAATAGTATCATTAC
CGCCGAGGCCAAAAGAGAGGCGTCCGCGGGCGGACTTCGAGTGTCTGCGC
TTATCCAGGAGAAGCCCTTGAACAATATGACCACGGCGTGTTTTGAAGCT
GTAGAAGCCTCAAGAAACCCCAGGGGCTGGGGTCGTGGTCAAGGCGGAAC
GGGT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16:27375..28528-

>mRNA_Ecto-sp13_S_contig16.4397.1 ID=mRNA_Ecto-sp13_S_contig16.4397.1|Name=mRNA_Ecto-sp13_S_contig16.4397.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=504bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16:27375..28528- (Ectocarpus species13 EcNAP12_S_4_19m)
TTTGTTCCTTGCTTGCTCATCGACGAGAAGCGGAAGGACGTCGCAAGATT
CGATCTTGGGTGTTGCTGGAAGGAAACTACCGAGCCCGGGAGAATCATCA
GCGGACCGCCAAGAGTTCATAGTCGGCGTGATTCCTTTGTGCTTGAGCAA
CTCTCCGACACGGATCACCCAGCTTCCATTGCCGACGAAACCTGGAACGA
CAATGGTGATGAGGCGCGCAGCCCTCCTTGTTCCCGAGCCGCTCCCTTCG
TGGGAAAAACTGTTCCAACCCAGCCGAACTATCCCTTCCCTTCCCGCGTT
CCCCACCCCGGGTTCGGAACGGTGGGAGTGAAAGAGGAGCAGGCCGAAAC
AACGGGCAAGATTGCCTTCAGACGAAACGACCTGATGTTCACCAACCTCG
CTCACGACACGAGGCCAAAAATAGTATCATTACCGCCGAGGCCAAAAGAG
AGGCGTCCGCGGGCGGACTTCGAGTGTCTGCGCTTATCCAGGAGAAGCCC
TTGA
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