mRNA_Ecto-sp13_S_contig15988.4389.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig15988.4389.1
Unique NamemRNA_Ecto-sp13_S_contig15988.4389.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15988.4389.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15988contigEcto-sp13_S_contig15988:3104..4018 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size313
Hectar predicted targeting categoryno signal peptide or anchor
Exons3
Cds size168
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462844.7976456-UTR-Ecto-sp13_S_contig15988:3103..32471681462844.7976456-UTR-Ecto-sp13_S_contig15988:3103..3247Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig15988 3104..3247 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462844.8079157-CDS-Ecto-sp13_S_contig15988:3247..33261681462844.8079157-CDS-Ecto-sp13_S_contig15988:3247..3326Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15988 3248..3326 +
1681462844.817898-CDS-Ecto-sp13_S_contig15988:3670..37361681462844.817898-CDS-Ecto-sp13_S_contig15988:3670..3736Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15988 3671..3736 +
1681462844.8277307-CDS-Ecto-sp13_S_contig15988:3995..40181681462844.8277307-CDS-Ecto-sp13_S_contig15988:3995..4018Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15988 3996..4018 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15988.4389.1prot_Ecto-sp13_S_contig15988.4389.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig15988 3248..4018 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig15988.4389.1

>prot_Ecto-sp13_S_contig15988.4389.1 ID=prot_Ecto-sp13_S_contig15988.4389.1|Name=mRNA_Ecto-sp13_S_contig15988.4389.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=56bp
MSNPIKWLDRDEGPVNYGEPTYWERRYELDRKEFGTSYRHDWYFEHDKLK
ATFESY
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mRNA from alignment at Ecto-sp13_S_contig15988:3104..4018+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig15988.4389.1 ID=mRNA_Ecto-sp13_S_contig15988.4389.1|Name=mRNA_Ecto-sp13_S_contig15988.4389.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=915bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15988:3104..4018+ (Ectocarpus species13 EcNAP12_S_4_19m)
TGGCTCCCGAAGACCTGTACCCCACAAGATGATATCTGCATTGGTTGTTG
CTTACGATAATCTCCGTTTATTGTTTCAGCACACCTAAAGGACTCAGCAA
CCGATAGATCGAGAGGCTCACGAGCAGGCACCTTGCCTATCATCATGTCG
AACCCGATAAAATGGCTGGACAGAGACGAGGGTCCGGTCAACTACGGCGA
ACCAACCTACTGGGAGAGGCGATGTAAGCAGCGTCAAATGCCGTCAAGGC
GACTGCACCAGGTCTAGGGTGTTCAATCCGCTCCCTTTTTTGTCTTGATC
TAAACGTACTGAACTACACTGAAACTTTGTACGATCCGTCCATCCATGTG
ACTTGAGGGATCCTCTGGCCCCGCACCCACCCCTGTTTGAGCCGTTGTAC
GCTATGCTAGATACGAAGACGGCTTTCGGGATTAAACCAGAACTCAACCA
ACCGGTTGGCCCACAGACAATTCGACGCACAAGAGGAACCGTCCTCGACA
GTCATAGTAGCAATCAAACCTTTCTTTGTTGCTTCCTTTTCTTGCGCCGA
CCGCACCATCTGTTCAGACGAGTTGGACCGGAAAGAATTCGGCACCAGTT
ACCGGCATGACTGGTACTTTGAGCACGATAAATGTGAGGACCACGAAGGA
CAGAGAGATGGCATCTTGCCATCTGCTGTAATTAAGCAACGAAGGAGAGC
GCATCCCGCAAGTTTTGTGTTGGGGATACAATCTACTTGCAACATACGAT
ACTTCTGTACGTACCCGTTGAGCCAACAACGTGTAGCCCTGTACCGTGCT
TGATCGGAAGGGAGAAAAATACTCTAGCCTGTCGGCTGCACTTACGAGCT
CCCGCTTGACCCTCCTGTTGCTGTCATCAACTCTCCGTCCAGTAAAAGCA
ACTTTTGAGTCCTAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15988:3104..4018+

>mRNA_Ecto-sp13_S_contig15988.4389.1 ID=mRNA_Ecto-sp13_S_contig15988.4389.1|Name=mRNA_Ecto-sp13_S_contig15988.4389.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=168bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15988:3104..4018+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCGAACCCGATAAAATGGCTGGACAGAGACGAGGGTCCGGTCAACTA
CGGCGAACCAACCTACTGGGAGAGGCGATACGAGTTGGACCGGAAAGAAT
TCGGCACCAGTTACCGGCATGACTGGTACTTTGAGCACGATAAATTAAAA
GCAACTTTTGAGTCCTAC
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