mRNA_Ecto-sp13_S_contig15982.4385.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig15982.4385.1
Unique NamemRNA_Ecto-sp13_S_contig15982.4385.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15982.4385.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15982contigEcto-sp13_S_contig15982:988..4021 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size1302
Hectar predicted targeting categoryother localisation
Exons5
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-02_002800.1
Cds size1302
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462844.4892757-CDS-Ecto-sp13_S_contig15982:987..15451681462844.4892757-CDS-Ecto-sp13_S_contig15982:987..1545Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15982 988..1545 -
1681462844.508857-CDS-Ecto-sp13_S_contig15982:1915..19881681462844.508857-CDS-Ecto-sp13_S_contig15982:1915..1988Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15982 1916..1988 -
1681462844.519129-CDS-Ecto-sp13_S_contig15982:2324..28701681462844.519129-CDS-Ecto-sp13_S_contig15982:2324..2870Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15982 2325..2870 -
1681462844.5283635-CDS-Ecto-sp13_S_contig15982:3481..35701681462844.5283635-CDS-Ecto-sp13_S_contig15982:3481..3570Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15982 3482..3570 -
1681462844.5376742-CDS-Ecto-sp13_S_contig15982:3985..40211681462844.5376742-CDS-Ecto-sp13_S_contig15982:3985..4021Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15982 3986..4021 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15982.4385.1prot_Ecto-sp13_S_contig15982.4385.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig15982 988..4021 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig15982.4385.1

>prot_Ecto-sp13_S_contig15982.4385.1 ID=prot_Ecto-sp13_S_contig15982.4385.1|Name=mRNA_Ecto-sp13_S_contig15982.4385.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=434bp
LDRKLLALDEVQNRTGKTLADDDVRRLIVVTADCQVVEETIKSIEAGIED
LHSLNQGIHAVYQNKNNSNTASSGSSSGRSSGSDTPVVGGSCMFLTPPAR
IVDATSGLAPAAPGTYDGGRRSGYQHQVGVSGGRPLEGVLGYNDSGSTTR
PGRGSGCGCGGWPVFEHCSGGEAPPNHGGAEAAAPTKADAGTVSVGTSPT
ARVTSSRYQHQHQQQQHDHHHHRRPQGDGTVADGDALERQRPLGRGGTNP
RQQRTPFRLQVPHGRNPRQQQQRQVQLEDTLQRQQHQQHEILRRQQQQQR
WRLQHAHQPRQQQQSGLEHSRQHAALNGHRAPETSPRRSENKREGAEATT
GLLLAGSRSGDGGTGTRTAAIPPAAVMQDSGTPEQRDGTPDRARGAARAC
KSAVEPGGCGNVGGVPGHGRRGENTVEVKPPAPS
back to top

mRNA from alignment at Ecto-sp13_S_contig15982:988..4021-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig15982.4385.1 ID=mRNA_Ecto-sp13_S_contig15982.4385.1|Name=mRNA_Ecto-sp13_S_contig15982.4385.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3034bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15982:988..4021- (Ectocarpus species13 EcNAP12_S_4_19m)
CTGGATCGGAAGCTGCTTGCCCTGGACGAAGTACAGGTATGTAGGCAAAT
AAAATAATGGCAGAGGCAACGACAATAAATATTAGGTCATGGTTGGGAAG
AAGTAAAGCATTGGCCGTATTTTCTGAGTTAGAACTAAGTCGTCTGTTGT
TCGTCAGTTTGTTGTTGTGTCAGTTTGTTGGTGCGAGACGAAGAACATAC
TTGTTGTTCTGCTTTGTCGAATAAAATATCAAGAGCATGCAAGTGTTGGC
GGTGCTACTACCTTCCTAAATGTGGAGCAGGCACGTTTTTGCTCTCGCTT
TTCTGCGTCTCCAAGCTGACGCGTGGCGGTCGAACGGTGAAAAGCGTACA
GAAATCCAAACCCTAAACGATCGCCGCCCCCACCCTCCCTCGCCCTTGCC
GAAAACAAACTCATGGACGAACGACCGGAAAATCGCATCGCTGTCGTTTA
GAATCGAACGGGCAAGACGTTAGCCGACGACGATGTCCGAAGGCTGATCG
TCGTTACTGCGGACTGCCAGGTCGTAGAGGAGACAATCAAGTGCGTATGT
ATCTGCAGCCTTTGTACCTAATGAGTTTTGGTGTCCCGCCGGTGTTCGCT
TCTCGCATTGTTTGGAGGTGTGTGTATCGCCGCCGTGTGCTACTCCTTGT
TTCGAGGTCGAAGGCAAAGGCAAAAGCGTTTCGCCCGTATTATTGCGGGG
AGACGCGTGTTTTCTATCGAGAGGCAACTGGTTTTCTTCTGGGCCTTGGT
CGTCCCGATTGCCGTCTCATTCTTGCTCAATCCTACGACACCACCTGCGA
CGAGTGGAAGACGTTCCCTGAGTTTTATGCAAAGTCACAGGTTCGATCCT
GGGCCGGAGTTTCACAGAACGTTAGTCCGCATGTTCAGCACACAACACAC
ACGACGCTGACTGGAAGGCACGTCGTTCAGCCGGGAGGTCTGGAGCAGGG
TGGGAGAATGATTGCCTTCAATGACCCAATCCCCCGTGTGTCTCGATCGT
GTCCACGTGCCACCAACACACGCCACGTCTTGTTTCTTCGTTTCTCAGTG
GTACGGATCCCTCCCCCCCCTTCGGCGCTGCCTCTACTACTACTGTGCCT
CGTAAACGGGGGGAAACGAACCGTAACTAATGGGTCACACGCCTGACGCA
GGAGCATTGAGGCAGGCATCGAAGACCTGCATAGCCTCAACCAAGGAATC
CACGCCGTTTACCAGAACAAAAACAACAGTAACACCGCCAGCAGTGGCAG
CAGCAGCGGCAGGAGCAGCGGCAGCGACACCCCTGTAGTCGGCGGTAGCT
GCATGTTTCTCACCCCCCCCGCCCGAATTGTCGATGCTACAAGCGGCTTG
GCGCCCGCAGCCCCGGGCACCTACGATGGCGGCCGCCGGAGCGGTTATCA
ACACCAAGTTGGCGTTTCAGGGGGGCGGCCGTTGGAGGGAGTTCTAGGAT
ACAACGACAGCGGCAGCACAACCCGCCCAGGACGTGGCAGCGGCTGCGGC
TGCGGCGGTTGGCCGGTGTTTGAGCATTGTTCGGGAGGAGAAGCTCCTCC
GAACCACGGGGGGGCTGAAGCAGCTGCTCCGACCAAGGCGGACGCGGGAA
CAGTGTCAGTGGGAACGTCACCGACCGCGCGAGTGACGAGTTCGCGTTAC
CAGCATCAGCATCAGCAGCAGCAGCACGACCACCACCACCACCGCAGGTA
CTAAAAATAATCCGTGCGTTGTTTTCCGGGCTGGGCAGGATTGTGGACTG
CAGGCTCTCGTGTTTGGCGGACCCCTTGGCTTGGAGGTAGGGGGGGATCT
ACCCTGGTGATTCATGATGGTGTTGGTGCGATCATATGCACGACCATGGG
GGCCTTCCCCCATCCTGTCGCCCGGGCCTCGGTGCAGGAGGCGTTTTCGC
CAAGCGGCGACATTGATTTGTCGACACCAAGCTTAACCCTGAACACCCTT
TCATTGACCCGTCTTTCCCCCCCCTCCCCTCCCCTCATGCGCAACCACCA
CATCTACCCTGTTGTGTGCGACCCCCTTTTCAGGCCCCAGGGTGATGGAA
CTGTTGCCGATGGCGATGCCTTGGAACGCCAACGCCCGCTCGGTCGAGGA
GGCACCGTGAGTAATTTCGTGGGAAGGCGGGCGGGTTGTAGGGATCGGTG
CACACTAACACGAAAGCGTTGCAGAAGAAAGAATGGATTGCCCCGTGAAG
CACAAGATGGGGGGGTGGAGGTTAAGGAGGCGTGTCGGTGGCTGCGGGTA
GATGGTGGGAGACAGCAGTTGCGTACTGATCTCTGTCTTGTGTTGCCGTC
GCCGTTGCAAAAGTTGGCCTGGTTTTTTTCCTCAATGTGATTAACGACTT
CGTTTGTCATTCGCAGCGTGGGTCTTTTTCCCTGAACCAAACCTGCTCGG
CCCGGCGTCTCTCTTGTGCACGTGTGCCCCTCCAACACGCGCACCGATGT
CATCACCCTGCTGTATTTTGGAACAGAACCCCCGTCAACAGCGCACTCCG
TTCAGGCTCCAAGTACCACATGGACGAAATCCTCGTCAACAGCAGCAGCG
GCAGGTGCAACTAGAGGACACGCTGCAGCGACAGCAACACCAGCAACACG
AGATACTCCGGCGACAGCAGCAGCAGCAGCGGTGGAGGCTTCAGCACGCG
CACCAGCCCCGACAGCAACAGCAGTCCGGGCTGGAGCATAGCCGACAGCA
TGCCGCCCTGAACGGTCACCGCGCCCCCGAAACTTCTCCGCGGAGGTCGG
AGAACAAGCGGGAGGGGGCGGAGGCAACAACGGGACTCCTTCTTGCCGGC
AGCAGGAGCGGCGACGGCGGCACCGGCACACGCACCGCGGCGATCCCGCC
TGCCGCCGTCATGCAAGACAGCGGCACTCCTGAGCAACGCGACGGCACTC
CTGATAGGGCCCGAGGCGCAGCAAGGGCCTGTAAAAGCGCGGTGGAACCG
GGTGGATGCGGCAATGTGGGCGGGGTGCCGGGGCACGGTCGTCGGGGAGA
AAATACGGTGGAAGTAAAGCCGCCGGCTCCGTCG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15982:988..4021-

>mRNA_Ecto-sp13_S_contig15982.4385.1 ID=mRNA_Ecto-sp13_S_contig15982.4385.1|Name=mRNA_Ecto-sp13_S_contig15982.4385.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1302bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15982:988..4021- (Ectocarpus species13 EcNAP12_S_4_19m)
CTGGATCGGAAGCTGCTTGCCCTGGACGAAGTACAGAATCGAACGGGCAA
GACGTTAGCCGACGACGATGTCCGAAGGCTGATCGTCGTTACTGCGGACT
GCCAGGTCGTAGAGGAGACAATCAAGAGCATTGAGGCAGGCATCGAAGAC
CTGCATAGCCTCAACCAAGGAATCCACGCCGTTTACCAGAACAAAAACAA
CAGTAACACCGCCAGCAGTGGCAGCAGCAGCGGCAGGAGCAGCGGCAGCG
ACACCCCTGTAGTCGGCGGTAGCTGCATGTTTCTCACCCCCCCCGCCCGA
ATTGTCGATGCTACAAGCGGCTTGGCGCCCGCAGCCCCGGGCACCTACGA
TGGCGGCCGCCGGAGCGGTTATCAACACCAAGTTGGCGTTTCAGGGGGGC
GGCCGTTGGAGGGAGTTCTAGGATACAACGACAGCGGCAGCACAACCCGC
CCAGGACGTGGCAGCGGCTGCGGCTGCGGCGGTTGGCCGGTGTTTGAGCA
TTGTTCGGGAGGAGAAGCTCCTCCGAACCACGGGGGGGCTGAAGCAGCTG
CTCCGACCAAGGCGGACGCGGGAACAGTGTCAGTGGGAACGTCACCGACC
GCGCGAGTGACGAGTTCGCGTTACCAGCATCAGCATCAGCAGCAGCAGCA
CGACCACCACCACCACCGCAGGCCCCAGGGTGATGGAACTGTTGCCGATG
GCGATGCCTTGGAACGCCAACGCCCGCTCGGTCGAGGAGGCACCAACCCC
CGTCAACAGCGCACTCCGTTCAGGCTCCAAGTACCACATGGACGAAATCC
TCGTCAACAGCAGCAGCGGCAGGTGCAACTAGAGGACACGCTGCAGCGAC
AGCAACACCAGCAACACGAGATACTCCGGCGACAGCAGCAGCAGCAGCGG
TGGAGGCTTCAGCACGCGCACCAGCCCCGACAGCAACAGCAGTCCGGGCT
GGAGCATAGCCGACAGCATGCCGCCCTGAACGGTCACCGCGCCCCCGAAA
CTTCTCCGCGGAGGTCGGAGAACAAGCGGGAGGGGGCGGAGGCAACAACG
GGACTCCTTCTTGCCGGCAGCAGGAGCGGCGACGGCGGCACCGGCACACG
CACCGCGGCGATCCCGCCTGCCGCCGTCATGCAAGACAGCGGCACTCCTG
AGCAACGCGACGGCACTCCTGATAGGGCCCGAGGCGCAGCAAGGGCCTGT
AAAAGCGCGGTGGAACCGGGTGGATGCGGCAATGTGGGCGGGGTGCCGGG
GCACGGTCGTCGGGGAGAAAATACGGTGGAAGTAAAGCCGCCGGCTCCGT
CG
back to top