mRNA_Ecto-sp13_S_contig15979.4382.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig15979.4382.1
Unique NamemRNA_Ecto-sp13_S_contig15979.4382.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig15979.4382.1 vs. uniprot
Match: D7FK77_ECTSI (Poly [ADP-ribose] polymerase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FK77_ECTSI)

HSP 1 Score: 159 bits (401), Expect = 1.890e-43
Identity = 79/80 (98.75%), Postives = 80/80 (100.00%), Query Frame = 1 
Query:    1 SVAVVAAIVKSGLRIMPHSGGRVGKGIYLASENAKSRQYVRPAYGAKGPGVNLGIMFLCEAALGNEASITVDDWKLTKPP 240
            +VAVVAAIVKSGLRIMPHSGGRVGKGIYLASENAKSRQYVRPAYGAKGPGVNLGIMFLCEAALGNEASITVDDWKLTKPP
Sbjct:  800 NVAVVAAIVKSGLRIMPHSGGRVGKGIYLASENAKSRQYVRPAYGAKGPGVNLGIMFLCEAALGNEASITVDDWKLTKPP 879
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BLAST of mRNA_Ecto-sp13_S_contig15979.4382.1 vs. uniprot
Match: UPI001FEF0306 (protein mono-ADP-ribosyltransferase PARP3 n=1 Tax=Tachysurus fulvidraco TaxID=1234273 RepID=UPI001FEF0306)

HSP 1 Score: 102 bits (255), Expect = 7.860e-24
Identity = 55/80 (68.75%), Postives = 61/80 (76.25%), Query Frame = 1 
Query:    1 SVAVVAAIVKSGLRIMPHSGGRVGKGIYLASENAKSRQYVRPAYGAKGPGVNLGIMFLCEAALGNEASITVDDWKLTKPP 240
            SVAVVAAI+KSGLRIMPHSGGRVG+GIY ASEN KS  YVRP+        N+GIMFL E ALGNE +IT+DD  L  PP
Sbjct:  381 SVAVVAAILKSGLRIMPHSGGRVGRGIYFASENEKSASYVRPSK-------NIGIMFLNEVALGNEYTITIDDSSLRSPP 453
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BLAST of mRNA_Ecto-sp13_S_contig15979.4382.1 vs. uniprot
Match: A0A444V5Z5_ACIRT (Poly [ADP-ribose] polymerase n=5 Tax=Acipenseroidei TaxID=186622 RepID=A0A444V5Z5_ACIRT)

HSP 1 Score: 99.0 bits (245), Expect = 2.170e-22
Identity = 56/80 (70.00%), Postives = 60/80 (75.00%), Query Frame = 1 
Query:    1 SVAVVAAIVKSGLRIMPHSGGRVGKGIYLASENAKSRQYVRPAYGAKGPGVNLGIMFLCEAALGNEASITVDDWKLTKPP 240
            +VAVVAAI+KSGLRIMPHSGGRVGKGIYLASEN+KS  YVRP+        N GIMFL EAALGNE SI  DD  L   P
Sbjct:  493 NVAVVAAILKSGLRIMPHSGGRVGKGIYLASENSKSACYVRPSAN------NTGIMFLTEAALGNEFSIAKDDSSLEAAP 566
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BLAST of mRNA_Ecto-sp13_S_contig15979.4382.1 vs. uniprot
Match: UPI0006B0DA2D (poly [ADP-ribose] polymerase 3-like n=1 Tax=Limulus polyphemus TaxID=6850 RepID=UPI0006B0DA2D)

HSP 1 Score: 98.6 bits (244), Expect = 2.880e-22
Identity = 54/80 (67.50%), Postives = 59/80 (73.75%), Query Frame = 1 
Query:    1 SVAVVAAIVKSGLRIMPHSGGRVGKGIYLASENAKSRQYVRPAYGAKGPGVNLGIMFLCEAALGNEASITVDDWKLTKPP 240
            +VAVVAAI+KSGLRIMPHSGGRVGKGIY ASEN+KS  YV P +G       +GIMFL E ALG E  IT DD  L KPP
Sbjct:  445 NVAVVAAIMKSGLRIMPHSGGRVGKGIYFASENSKSAGYVGPCHG-------IGIMFLSEVALGKEKVITQDDPSLVKPP 517
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BLAST of mRNA_Ecto-sp13_S_contig15979.4382.1 vs. uniprot
Match: A0A3B4CHY3_PYGNA (Poly [ADP-ribose] polymerase n=3 Tax=Serrasalmidae TaxID=42495 RepID=A0A3B4CHY3_PYGNA)

HSP 1 Score: 97.4 bits (241), Expect = 6.380e-22
Identity = 54/80 (67.50%), Postives = 60/80 (75.00%), Query Frame = 1 
Query:    1 SVAVVAAIVKSGLRIMPHSGGRVGKGIYLASENAKSRQYVRPAYGAKGPGVNLGIMFLCEAALGNEASITVDDWKLTKPP 240
            +VAVVAAI+KSGLRIMPHSGGRVG+GIY ASEN KS  YV P+        N+GIMFL E ALG E +ITVDD  L KPP
Sbjct:  382 NVAVVAAILKSGLRIMPHSGGRVGRGIYFASENQKSAGYVCPSN-------NIGIMFLNEVALGREHTITVDDCGLRKPP 454
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BLAST of mRNA_Ecto-sp13_S_contig15979.4382.1 vs. uniprot
Match: A0A814MA41_ADIRI (Poly [ADP-ribose] polymerase n=2 Tax=Adineta ricciae TaxID=249248 RepID=A0A814MA41_ADIRI)

HSP 1 Score: 97.4 bits (241), Expect = 7.280e-22
Identity = 54/80 (67.50%), Postives = 58/80 (72.50%), Query Frame = 1 
Query:    1 SVAVVAAIVKSGLRIMPHSGGRVGKGIYLASENAKSRQYVRPAYGAKGPGVNLGIMFLCEAALGNEASITVDDWKLTKPP 240
            +VAVV AI+KSGLRIMPHSGGRVGKGIY ASEN KS  YV   +     G N+GIMFL E ALG E SIT DD  L KPP
Sbjct:  430 NVAVVVAILKSGLRIMPHSGGRVGKGIYFASENGKSSGYVGTTHDQ---GKNIGIMFLNEVALGREHSITADDSSLKKPP 506
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BLAST of mRNA_Ecto-sp13_S_contig15979.4382.1 vs. uniprot
Match: A0A814EN69_ADIRI (Poly [ADP-ribose] polymerase n=3 Tax=Adineta ricciae TaxID=249248 RepID=A0A814EN69_ADIRI)

HSP 1 Score: 97.4 bits (241), Expect = 7.720e-22
Identity = 54/80 (67.50%), Postives = 58/80 (72.50%), Query Frame = 1 
Query:    1 SVAVVAAIVKSGLRIMPHSGGRVGKGIYLASENAKSRQYVRPAYGAKGPGVNLGIMFLCEAALGNEASITVDDWKLTKPP 240
            +VAVV AI+KSGLRIMPHSGGRVGKGIY ASEN KS  YV   +     G N+GIMFL E ALG E SIT DD  L KPP
Sbjct:  423 NVAVVVAILKSGLRIMPHSGGRVGKGIYFASENGKSSGYVGTTHDQ---GKNIGIMFLNEVALGREHSITADDSSLKKPP 499
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BLAST of mRNA_Ecto-sp13_S_contig15979.4382.1 vs. uniprot
Match: A0A087XAK9_POEFO (Poly [ADP-ribose] polymerase n=14 Tax=Poeciliinae TaxID=586240 RepID=A0A087XAK9_POEFO)

HSP 1 Score: 97.1 bits (240), Expect = 9.120e-22
Identity = 53/80 (66.25%), Postives = 59/80 (73.75%), Query Frame = 1 
Query:    1 SVAVVAAIVKSGLRIMPHSGGRVGKGIYLASENAKSRQYVRPAYGAKGPGVNLGIMFLCEAALGNEASITVDDWKLTKPP 240
            ++AVVAAI+KSGLRIMPHSGGRVG GIY ASENAKS  YVRP+        N G+MFL E ALGNE +IT DD  L K P
Sbjct:  379 NIAVVAAILKSGLRIMPHSGGRVGSGIYFASENAKSLGYVRPSN-------NTGVMFLSEVALGNEFTITRDDCTLKKAP 451
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BLAST of mRNA_Ecto-sp13_S_contig15979.4382.1 vs. uniprot
Match: H2S0R8_TAKRU (Poly [ADP-ribose] polymerase n=1 Tax=Takifugu rubripes TaxID=31033 RepID=H2S0R8_TAKRU)

HSP 1 Score: 96.7 bits (239), Expect = 1.270e-21
Identity = 51/80 (63.75%), Postives = 60/80 (75.00%), Query Frame = 1 
Query:    1 SVAVVAAIVKSGLRIMPHSGGRVGKGIYLASENAKSRQYVRPAYGAKGPGVNLGIMFLCEAALGNEASITVDDWKLTKPP 240
            ++AVVAAI+KSGLRIMPHSGGRVG+GIY ASEN+KS  YVR +        N G+MFLCE ALG E +ITVD+  L K P
Sbjct:  385 NIAVVAAILKSGLRIMPHSGGRVGRGIYFASENSKSAGYVRTSK-------NTGVMFLCEVALGKEKTITVDNSSLKKAP 457
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BLAST of mRNA_Ecto-sp13_S_contig15979.4382.1 vs. uniprot
Match: A0A818CY42_9BILA (Poly [ADP-ribose] polymerase n=3 Tax=Rotaria sp. Silwood1 TaxID=2762511 RepID=A0A818CY42_9BILA)

HSP 1 Score: 96.7 bits (239), Expect = 1.370e-21
Identity = 53/80 (66.25%), Postives = 60/80 (75.00%), Query Frame = 1 
Query:    1 SVAVVAAIVKSGLRIMPHSGGRVGKGIYLASENAKSRQYVRPAYGAKGPGVNLGIMFLCEAALGNEASITVDDWKLTKPP 240
            +VAVV AI+K+GLRIMPHSGGRVGKGIY ASEN KS  YV  A   +  G N+GIMFL E ALG E SIT+DD  + KPP
Sbjct:  436 NVAVVVAILKTGLRIMPHSGGRVGKGIYFASENGKSSGYVGTA---QQEGKNIGIMFLNEVALGKEHSITLDDSSIKKPP 512
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15979.4382.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FK77_ECTSI1.890e-4398.75Poly [ADP-ribose] polymerase n=2 Tax=Ectocarpus Ta... [more]
UPI001FEF03067.860e-2468.75protein mono-ADP-ribosyltransferase PARP3 n=1 Tax=... [more]
A0A444V5Z5_ACIRT2.170e-2270.00Poly [ADP-ribose] polymerase n=5 Tax=Acipenseroide... [more]
UPI0006B0DA2D2.880e-2267.50poly [ADP-ribose] polymerase 3-like n=1 Tax=Limulu... [more]
A0A3B4CHY3_PYGNA6.380e-2267.50Poly [ADP-ribose] polymerase n=3 Tax=Serrasalmidae... [more]
A0A814MA41_ADIRI7.280e-2267.50Poly [ADP-ribose] polymerase n=2 Tax=Adineta ricci... [more]
A0A814EN69_ADIRI7.720e-2267.50Poly [ADP-ribose] polymerase n=3 Tax=Adineta ricci... [more]
A0A087XAK9_POEFO9.120e-2266.25Poly [ADP-ribose] polymerase n=14 Tax=Poeciliinae ... [more]
H2S0R8_TAKRU1.270e-2163.75Poly [ADP-ribose] polymerase n=1 Tax=Takifugu rubr... [more]
A0A818CY42_9BILA1.370e-2166.25Poly [ADP-ribose] polymerase n=3 Tax=Rotaria sp. S... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15979contigEcto-sp13_S_contig15979:60..714 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score160.2
Seed ortholog evalue3.9e-37
Seed eggNOG ortholog2880.D7FK77
Preferred namePARP3
Model size240
KEGG koko:K10798
KEGG Pathwayko03410,ko04210,ko04212,ko04214,ko04217,map03410,map04210,map04212,map04214,map04217
KEGG ModuleM00296
Hectar predicted targeting categoryother localisation
GOsGO:0000723,GO:0003674,GO:0003824,GO:0003909,GO:0003910,GO:0003950,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0005737,GO:0005814,GO:0005815,GO:0005856,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006266,GO:0006271,GO:0006273,GO:0006281,GO:0006302,GO:0006464,GO:0006471,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007346,GO:0008104,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009889,GO:0009890,GO:0009892,GO:0009893,GO:0009987,GO:0010556,GO:0010558,GO:0010564,GO:0010604,GO:0010605,GO:0015630,GO:0016043,GO:0016070,GO:0016740,GO:0016757,GO:0016763,GO:0016874,GO:0016886,GO:0019219,GO:0019222,GO:0019538,GO:0022616,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0032200,GO:0032886,GO:0033036,GO:0033043,GO:0033365,GO:0033554,GO:0034502,GO:0034613,GO:0034641,GO:0034645,GO:0035861,GO:0036211,GO:0042592,GO:0043086,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043412,GO:0044092,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044427,GO:0044430,GO:0044444,GO:0044446,GO:0044450,GO:0044464,GO:0045934,GO:0045935,GO:0046483,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051052,GO:0051053,GO:0051054,GO:0051103,GO:0051105,GO:0051106,GO:0051128,GO:0051171,GO:0051172,GO:0051173,GO:0051179,GO:0051276,GO:0051338,GO:0051348,GO:0051493,GO:0051641,GO:0051716,GO:0051726,GO:0051972,GO:0051974,GO:0060236,GO:0060249,GO:0060255,GO:0065007,GO:0065008,GO:0065009,GO:0070507,GO:0070727,GO:0071704,GO:0071840,GO:0080090,GO:0090224,GO:0090304,GO:0090734,GO:0140097,GO:1901360,GO:1901564,GO:1901576,GO:1905661,GO:1905662,GO:1990166,GO:2000112,GO:2000113,GO:2000278,GO:2000279
Exons2
EggNOG free text desc.NAD ADP-ribosyltransferase activity
EggNOG OGsKOG1037@1,KOG1037@2759
EC2.4.2.30
Cds size240
COG Functional cat.H
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03032,ko03036,ko03400
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462844.1579993-CDS-Ecto-sp13_S_contig15979:59..1661681462844.1579993-CDS-Ecto-sp13_S_contig15979:59..166Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15979 60..166 +
1681462844.1753771-CDS-Ecto-sp13_S_contig15979:581..7141681462844.1753771-CDS-Ecto-sp13_S_contig15979:581..714Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15979 582..714 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15979.4382.1prot_Ecto-sp13_S_contig15979.4382.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig15979 60..714 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig15979.4382.1

>prot_Ecto-sp13_S_contig15979.4382.1 ID=prot_Ecto-sp13_S_contig15979.4382.1|Name=mRNA_Ecto-sp13_S_contig15979.4382.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=80bp
SVAVVAAIVKSGLRIMPHSGGRVGKGIYLASENAKSRQYVRPAYGAKGPG
VNLGIMFLCEAALGNEASITVDDWKLTKPP
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mRNA from alignment at Ecto-sp13_S_contig15979:60..714+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig15979.4382.1 ID=mRNA_Ecto-sp13_S_contig15979.4382.1|Name=mRNA_Ecto-sp13_S_contig15979.4382.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=655bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15979:60..714+ (Ectocarpus species13 EcNAP12_S_4_19m)
TCAGTCGCTGTCGTGGCCGCCATCGTCAAGAGCGGGCTTCGCATCATGCC
CCACAGCGGCGGACGCGTGGGCAAGGGCATTTACCTCGCCTCCGAGAACG
CGAAGAGGTGAGATGAGACGAGTTAGTTCCGATGGTGACGCTGATGGTGT
ATGCGTGTTAGATTGAAACACCGTGGATAGGGATGATGTGGCAGGGCATC
CGGTGGTGCATGTGCAGTTCCACGTAGTTCTTCGCACATCAGTGAGGGAG
CACACCCCGCGCCTGTCCAGGACAGCATGCTGCTTACGACCGTAAAACCC
AGAAACGTGGCGCAATTAGCGTCGAATGGATTCGTTTGTGTGTTACTGTA
AGAAAGAAAACACCGCCAACGACCGCGATGCCTCAACAGTCACTAGTCTG
CACCGACATTGAACCACCACCACAAACAAAGAAATCAAAAGCAGCAGTAA
AATTAACTCTTACGTTTTAACTTGTTCGTTCTGCTTTCGCCATTCTTGTT
CCCGTTGCGTTCTCTCGCGCAGCCGTCAGTACGTGCGCCCAGCGTACGGG
GCGAAGGGCCCCGGGGTGAACCTCGGCATCATGTTCTTGTGCGAAGCGGC
CTTGGGCAACGAGGCTAGCATCACCGTCGACGACTGGAAGCTCACCAAAC
CCCCC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15979:60..714+

>mRNA_Ecto-sp13_S_contig15979.4382.1 ID=mRNA_Ecto-sp13_S_contig15979.4382.1|Name=mRNA_Ecto-sp13_S_contig15979.4382.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=240bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15979:60..714+ (Ectocarpus species13 EcNAP12_S_4_19m)
TCAGTCGCTGTCGTGGCCGCCATCGTCAAGAGCGGGCTTCGCATCATGCC
CCACAGCGGCGGACGCGTGGGCAAGGGCATTTACCTCGCCTCCGAGAACG
CGAAGAGCCGTCAGTACGTGCGCCCAGCGTACGGGGCGAAGGGCCCCGGG
GTGAACCTCGGCATCATGTTCTTGTGCGAAGCGGCCTTGGGCAACGAGGC
TAGCATCACCGTCGACGACTGGAAGCTCACCAAACCCCCC
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