prot_Ecto-sp13_S_contig15951.4367.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig15951.4367.1
Unique Nameprot_Ecto-sp13_S_contig15951.4367.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length116
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig15951.4367.1 vs. uniprot
Match: Q8QKU5_ESV1K (EsV-1-86 n=2 Tax=root TaxID=1 RepID=Q8QKU5_ESV1K)

HSP 1 Score: 206 bits (523), Expect = 1.330e-66
Identity = 106/115 (92.17%), Postives = 112/115 (97.39%), Query Frame = 0 
Query:    1 LLVLYQSRPSVTGTSAFAKGSLALATSTALQILFIRRCAVGGRPSNLQGVFAMIYPLFVVLSMMLSLILFKTGGGPSRLGVAVGSPVYQYRISDVVDRVRKIVGERTTSDDFRER 115
            LL+L+QSRPS+TGTSAFAKGSLAL  S ALQILFIRRCAVGG+PSNLQGVFAM+YP+FVVLSMMLSLILFKTGGGPSRLGVAVGSPVYQYRISDVVDRVRKIVGERTTSDDFRER
Sbjct:   18 LLILHQSRPSITGTSAFAKGSLALTASVALQILFIRRCAVGGKPSNLQGVFAMVYPVFVVLSMMLSLILFKTGGGPSRLGVAVGSPVYQYRISDVVDRVRKIVGERTTSDDFRER 132
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15951.4367.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Q8QKU5_ESV1K1.330e-6692.17EsV-1-86 n=2 Tax=root TaxID=1 RepID=Q8QKU5_ESV1K[more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 71..115
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 36..46
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 47..70
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..15
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 16..35
NoneNo IPR availableTMHMMTMhelixcoord: 50..69
NoneNo IPR availableTMHMMTMhelixcoord: 13..35

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15951contigEcto-sp13_S_contig15951:2..349 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15951.4367.1mRNA_Ecto-sp13_S_contig15951.4367.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig15951 2..349 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig15951.4367.1 ID=prot_Ecto-sp13_S_contig15951.4367.1|Name=mRNA_Ecto-sp13_S_contig15951.4367.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=116bp
LLVLYQSRPSVTGTSAFAKGSLALATSTALQILFIRRCAVGGRPSNLQGV
FAMIYPLFVVLSMMLSLILFKTGGGPSRLGVAVGSPVYQYRISDVVDRVR
KIVGERTTSDDFRER*
back to top