mRNA_Ecto-sp13_S_contig15951.4367.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig15951.4367.1
Unique NamemRNA_Ecto-sp13_S_contig15951.4367.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig15951.4367.1 vs. uniprot
Match: Q8QKU5_ESV1K (EsV-1-86 n=2 Tax=root TaxID=1 RepID=Q8QKU5_ESV1K)

HSP 1 Score: 206 bits (523), Expect = 1.330e-66
Identity = 106/115 (92.17%), Postives = 112/115 (97.39%), Query Frame = 1 
Query:    1 LLVLYQSRPSVTGTSAFAKGSLALATSTALQILFIRRCAVGGRPSNLQGVFAMIYPLFVVLSMMLSLILFKTGGGPSRLGVAVGSPVYQYRISDVVDRVRKIVGERTTSDDFRER 345
            LL+L+QSRPS+TGTSAFAKGSLAL  S ALQILFIRRCAVGG+PSNLQGVFAM+YP+FVVLSMMLSLILFKTGGGPSRLGVAVGSPVYQYRISDVVDRVRKIVGERTTSDDFRER
Sbjct:   18 LLILHQSRPSITGTSAFAKGSLALTASVALQILFIRRCAVGGKPSNLQGVFAMVYPVFVVLSMMLSLILFKTGGGPSRLGVAVGSPVYQYRISDVVDRVRKIVGERTTSDDFRER 132
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15951.4367.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Q8QKU5_ESV1K1.330e-6692.17EsV-1-86 n=2 Tax=root TaxID=1 RepID=Q8QKU5_ESV1K[more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15951contigEcto-sp13_S_contig15951:2..349 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size348
Hectar predicted targeting categorysignal anchor
Exons1
Ec32 ortholog descriptionEsV-1-86
Ec32 orthologEc-06_005950.1
Cds size348
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462843.0708344-CDS-Ecto-sp13_S_contig15951:1..3491681462843.0708344-CDS-Ecto-sp13_S_contig15951:1..349Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15951 2..349 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15951.4367.1prot_Ecto-sp13_S_contig15951.4367.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig15951 2..349 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig15951.4367.1

>prot_Ecto-sp13_S_contig15951.4367.1 ID=prot_Ecto-sp13_S_contig15951.4367.1|Name=mRNA_Ecto-sp13_S_contig15951.4367.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=116bp
LLVLYQSRPSVTGTSAFAKGSLALATSTALQILFIRRCAVGGRPSNLQGV
FAMIYPLFVVLSMMLSLILFKTGGGPSRLGVAVGSPVYQYRISDVVDRVR
KIVGERTTSDDFRER*
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mRNA from alignment at Ecto-sp13_S_contig15951:2..349+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig15951.4367.1 ID=mRNA_Ecto-sp13_S_contig15951.4367.1|Name=mRNA_Ecto-sp13_S_contig15951.4367.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=348bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15951:2..349+ (Ectocarpus species13 EcNAP12_S_4_19m)
TTGTTAGTTCTATACCAATCGCGCCCGTCGGTCACTGGAACTTCGGCTTT
CGCAAAAGGATCACTGGCGCTGGCAACGTCGACAGCCCTTCAGATCCTTT
TTATCCGGCGATGTGCCGTGGGGGGAAGACCATCCAACCTACAGGGTGTT
TTTGCGATGATATATCCACTGTTTGTTGTCCTGTCAATGATGCTGAGCCT
CATTCTGTTTAAAACTGGCGGAGGACCTTCGCGACTTGGCGTAGCGGTGG
GCAGCCCCGTGTATCAGTACAGAATCAGCGACGTGGTCGATCGGGTGAGA
AAAATTGTGGGTGAACGAACAACTTCTGATGATTTCAGAGAACGTTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15951:2..349+

>mRNA_Ecto-sp13_S_contig15951.4367.1 ID=mRNA_Ecto-sp13_S_contig15951.4367.1|Name=mRNA_Ecto-sp13_S_contig15951.4367.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=348bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15951:2..349+ (Ectocarpus species13 EcNAP12_S_4_19m)
TTGTTAGTTCTATACCAATCGCGCCCGTCGGTCACTGGAACTTCGGCTTT
CGCAAAAGGATCACTGGCGCTGGCAACGTCGACAGCCCTTCAGATCCTTT
TTATCCGGCGATGTGCCGTGGGGGGAAGACCATCCAACCTACAGGGTGTT
TTTGCGATGATATATCCACTGTTTGTTGTCCTGTCAATGATGCTGAGCCT
CATTCTGTTTAAAACTGGCGGAGGACCTTCGCGACTTGGCGTAGCGGTGG
GCAGCCCCGTGTATCAGTACAGAATCAGCGACGTGGTCGATCGGGTGAGA
AAAATTGTGGGTGAACGAACAACTTCTGATGATTTCAGAGAACGTTGA
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