mRNA_Ecto-sp13_S_contig15895.4325.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig15895.4325.1
Unique NamemRNA_Ecto-sp13_S_contig15895.4325.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig15895.4325.1 vs. uniprot
Match: D7FUN1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUN1_ECTSI)

HSP 1 Score: 847 bits (2188), Expect = 3.190e-298
Identity = 460/537 (85.66%), Postives = 476/537 (88.64%), Query Frame = 1
Query:    1 MAKVAQKDSGPDGLAAESTRLRVDGVIKDIISDHQGVIDKQIAT-DIIRKELLRLYDKPKVSQLEAVLFKRITEDEARHILFLPDHDQAAHYPTLIANPPKGAPAEHPQRALQVPHLSLLYLHHLKRWDFVSAFVLSGGLHALCSLFTHDNLVVRMKAITSLVSITSHPGFDWFAPPPGCIKGSANNSKTIKARLHRALLGLRSEPAFISGLIANSWSGGAA-GDTDAPAIEATEGGRGGKTFPGACLMCLELLAMWLSWVRALHTVDGALRLSRPLLRAIEEWAGKGDEREGNIAWSDERLPLTTLPQTKKPCGDGKAEGEGALVVAGGDIVDVAAVGAAAVNEKGKSTPAVVLTEKDSGAAAATEAAV--EGDGSSTGLGAPAGDLEAETAAMIQAERKERAEVLELSKKLVADFARFPPAEKDWEGVEEDG-GERSGGDLPRGGGAAGPAPTEEGRSSTAAVRGCCDDEARGSGDSGGREETSKAGGETRSFLPSEAAEAAPESPPTSAPTRKALALKIKGNEAFGGGDMQAAM 1596
            M K  +KDSG DG A ESTR RVDGVIKDIISDHQGV+DKQIAT DIIRKELLRLYDKPKVSQLEAVLFKRITEDEARHILFLPDHDQAAHYPTLIANPP+GAPAEHPQRALQ+PHLSLLYLHHLKRWDFVSAFVLSGGLHALC LFTHDNLVVRMKAITSLVSIT+HPGFDWFAP PG IKG+ANNS  I ARLHRALLGLRSEPAFISGLIANSWSGGAA  DTDA AIEATEGGRGGKTFPGACLMCLELLAMWLSWVRALHTVDG LRLSRPL RAIEEW G+G EREGNIAWS ERLPL TLP  KK CGDGKAEGEGA+VVA G+IVDVAAVGAAAV EKGK TPA  L EKDS            EGDGSSTG  APAGDLEAETAAMIQAERKERAEVLELSKKLVADFARFPPAE++WEGVEED  GERSGGDLP GGGAA P PTEEG+SSTAA RGCCDDEARGSGDSGGREETS+AG ETRS LPSEA E AP+ PPTS  TRKALALK++GNEAFG G MQAAM
Sbjct:    1 MTKCVRKDSGSDGPATESTRSRVDGVIKDIISDHQGVVDKQIATTDIIRKELLRLYDKPKVSQLEAVLFKRITEDEARHILFLPDHDQAAHYPTLIANPPEGAPAEHPQRALQIPHLSLLYLHHLKRWDFVSAFVLSGGLHALCPLFTHDNLVVRMKAITSLVSITAHPGFDWFAPLPGRIKGTANNSNAIDARLHRALLGLRSEPAFISGLIANSWSGGAAVDDTDATAIEATEGGRGGKTFPGACLMCLELLAMWLSWVRALHTVDGTLRLSRPLFRAIEEWGGRGGEREGNIAWS-ERLPLPTLPHAKKTCGDGKAEGEGAIVVAKGEIVDVAAVGAAAVTEKGKMTPAAALMEKDSAXXXXXXXXXXXEGDGSSTGGRAPAGDLEAETAAMIQAERKERAEVLELSKKLVADFARFPPAEQEWEGVEEDDRGERSGGDLPLGGGAAAPTPTEEGKSSTAAGRGCCDDEARGSGDSGGREETSEAGEETRSSLPSEATEVAPQPPPTSVSTRKALALKLEGNEAFGEGQMQAAM 536          
BLAST of mRNA_Ecto-sp13_S_contig15895.4325.1 vs. uniprot
Match: A0A6H5KEI6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEI6_9PHAE)

HSP 1 Score: 661 bits (1706), Expect = 3.130e-225
Identity = 340/393 (86.51%), Postives = 354/393 (90.08%), Query Frame = 1
Query:  145 KELLRLYDKPKVSQLEAVLFKRITEDEARHILFLPDHDQAAHYPTLIANPPKGAPAEHPQRALQVPHLSLLYLHHLKRWDFVSAFVLSGGLHALCSLFTHDNLVVRMKAITSLVSITSHPGFDWFAPPPGCIKGSANNSKTIKARLHRALLGLRSEPAFISGLIANSWSGGAAGDTDAPAIEATEGGRGGKTFPGACLMCLELLAMWLSWVRALHTVDGALRLSRPLLRAIEEWAGKGDEREGNIAWSDERLPLTTLPQTKKPCGDGKAEGEGALVVAGGDIVDVAAVGAAAVNEKGKSTPAVVLTEKDSGAAAATEAAVEGDGSSTGLGAPAGDLEAETAAMIQAERKERAEVLELSKKLVADFARFPPAEKDWEGVEEDGGERSGGDLPRG 1323
            KELLRLYDKPKVSQLEAVLFKRITEDEARHILFLPDHDQAAHYPTLIANPPKGAPAEHPQRALQVPHLSLLYLHHLKRWDFVSAFVLSGGLHALCSLFTHDNLV+RMKAITSLVSIT+HPGFDWFAPPPG IKG  NNS T +ARLHRALLGLRSEPAFISGLIANSWSGGAA DTDA AI+AT+GGRG KTFPGACLMCLELLAMWLSWVRALHTVDG LRLSRPL RAIEEWAGKG EREGNI WSDERLPLTTLP TKKPCGDGKAEG GA+VVA G++VDV A+G A V +K K TPA VL EKDSGA               G GAPAGD+EAETAAMIQAERKERAEVLELS+KLVADFARFPPAE++WEGVEEDGGERSGGDLPRG
Sbjct:    4 KELLRLYDKPKVSQLEAVLFKRITEDEARHILFLPDHDQAAHYPTLIANPPKGAPAEHPQRALQVPHLSLLYLHHLKRWDFVSAFVLSGGLHALCSLFTHDNLVIRMKAITSLVSITAHPGFDWFAPPPGRIKGKTNNSNTTEARLHRALLGLRSEPAFISGLIANSWSGGAADDTDATAIKATDGGRGDKTFPGACLMCLELLAMWLSWVRALHTVDGTLRLSRPLFRAIEEWAGKGGEREGNIEWSDERLPLTTLPHTKKPCGDGKAEGGGAIVVASGEVVDVVAIGGADVTKKEKITPAAVLAEKDSGAXXXXXXXXXXXXXXXG-GAPAGDIEAETAAMIQAERKERAEVLELSRKLVADFARFPPAEQEWEGVEEDGGERSGGDLPRG 395          
BLAST of mRNA_Ecto-sp13_S_contig15895.4325.1 vs. uniprot
Match: A0A7S2W3C3_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W3C3_9STRA)

HSP 1 Score: 161 bits (408), Expect = 8.810e-39
Identity = 101/266 (37.97%), Postives = 141/266 (53.01%), Query Frame = 1
Query:  112 IDKQIATDIIRKELLRLYDKPKVSQLEAVLFKRITEDEARHILFLPDHDQAAHYPTLIANPPKGAPAEHPQRALQVPHLSLLYLHHLK--RWD-FVSAFVLSGGLHALCSLFTHDNLVVRMKAITSLVSIT---SHPGFDWFAPPPGCIKGSANNSKTIKARLHRALLGLRSEPAFISGLIANSWSGGAAGDTDAPAIEATEGGRGGKTFPGACLMCLELLAMWLSWVRALHTVDGALRLSRPLLRAIEEWAGKGDEREGNIAWSD 891
            +D+     ++++ L  L++KP+V  +   +   + EDEAR +LF P  DQA  YP L+ +PP  A   HPQRA+Q+ HL+L+YLHHL+   W+ F S F+LSGGL +L  L T  NL +R +A+  L+ +T    + GFDW+ PP    + +  NS      LH  LL L S   +I GL+ NS S                      +FPG  L CL+LLA WLSWVR +      LR++R  L AI  W   GD   G    +D
Sbjct:   48 VDEATKEPVVQR-LRSLWEKPRVDAISEAVGTLVLEDEARQLLFFPTEDQAKLYPKLLRSPPLDAEENHPQRAVQIEHLTLIYLHHLRFAEWEAFTSPFLLSGGLESLVGLLTCQNLYIRGQAVDCLLQVTVGDRNGGFDWWKPPS---QDATANS------LHEGLLSLGSNQGWIEGLLLNSDSS--------------------TSFPGGPLQCLQLLAFWLSWVRQVRCASHRLRVARSFLSAIPCW---GDTAAGGDGAAD 280          
BLAST of mRNA_Ecto-sp13_S_contig15895.4325.1 vs. uniprot
Match: C1FJK6_MICCC (Uncharacterized protein n=1 Tax=Micromonas commoda (strain RCC299 / NOUM17 / CCMP2709) TaxID=296587 RepID=C1FJK6_MICCC)

HSP 1 Score: 142 bits (359), Expect = 1.120e-32
Identity = 93/259 (35.91%), Postives = 131/259 (50.58%), Query Frame = 1
Query:  139 IRKELLRLYDKPKVSQLEAVLFKRITEDEARHILFLPDHDQAAHYPTLIANPPKGAPAEHPQRALQVPHLSLLYLHHLKRWDFVSAFVLSGGLHALCSLFTHDNLVVRMKAITSLVSITSHPGFDWFAPPPGCIKGSANNSKTIKARLHRALLGLRSEPAFISGLIANSWSGGAAGDTDAPAIEATEGGRGGKTFPGACLMCLELLAMWLSWVRALHTVDGALRLSRPLLRAIEEWAGKGDEREGNIAWSDERLPLTTL 915
            IR  L R Y  P V+Q E  L + +T +  R +++ PD D A+ YP L+A+PP GAP +HPQ   QV +L  LYL H KRW F   F+L+GGL AL  +  H NL +R +A+ +L ++T    + W  PP   + GS+++     A LH  +L L   P  +  L+ N          DAP             FPGA  + L  LA + S++R  H  +  LRLS  LL  +  W+ + DE   +    DER    TL
Sbjct:   34 IRAGLARQYANPPVAQTERCLRQNLTPERCRALVYWPDEDDASLYPALLADPPPGAPEDHPQFRCQVTYLMSLYLCHSKRWAFAKGFILAGGLRALVGMCAHPNLHLRGQAMETLGALTREELYPWHEPP---VAGSSSD-----AALHARMLELARTP-LVPNLVLNY---------DAP-------------FPGASSLALRTLAFFASYLRLRHCPNNVLRLSDDLLATLTRWSTRDDEHVSD----DERQLAKTL 257          
BLAST of mRNA_Ecto-sp13_S_contig15895.4325.1 vs. uniprot
Match: A0A5A8C4V7_CAFRO (Uncharacterized protein n=3 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8C4V7_CAFRO)

HSP 1 Score: 120 bits (300), Expect = 6.330e-25
Identity = 91/296 (30.74%), Postives = 128/296 (43.24%), Query Frame = 1
Query:   25 SGPDGLAAESTRLRVDGVIKDIISDHQGVIDKQIAT--DIIRKELLRLYDKPKVSQLEAVLFKRITEDEARHILFLPDHD--QAAHYPTLIANPPKGAPAEHPQRALQVPHLSLLYLHHLKRWDFVSAFVLSGGLHALCSLFT---HDNLVV--RMKAITSLVSITSHPGFDWFAPPPGCIK--GSANNSKTIKA------RLHRALLGLRSEPAFISGLIANSWSGGAAGDTDAPAIEATEGGRGGKTFPGACLMCLELLAMWLSWVRALHTVDGALRLSRPLLRAIEEWAGKGD 861
            SGPD +A       +D +++D+++       +      +++ + L RLYD P V+       + +   E R +LF P  +   AA Y +L+A  P   PA +P+R LQ   + LL L H +RW  +SA +  G L  L +  +    D      R +A+  L   TSHP F WF P        G A      +A      RLH A+L L     F++ LI                        G    PG     L LLA WLSW R +HT DG LRLS P+L A+  W    D
Sbjct:   12 SGPDKVA-------LDALLEDVVAKLPSDRTESGLPFGELVSRSLRRLYDDPPVTACSISAGRPVGGHELRRVLFAPQVEAGDAAVYASLLAPLPASMPASNPRRRLQSEAVVLLQLRHAERWPLLSALIQHGALSCLAAALSDRSEDQAAAFRRAQALDLLTRATSHPAFPWFEPVAAAASRLGEAATPAGRRAAVEEATRLHSAMLALAPPRPFLADLIR----------------------LGSDPAPGVSSSALRLLAFWLSWARRMHTADGVLRLSAPMLAALRSWGNIPD 278          
BLAST of mRNA_Ecto-sp13_S_contig15895.4325.1 vs. uniprot
Match: A0A7S1NC57_9EUGL (Hypothetical protein (Fragment) n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1NC57_9EUGL)

HSP 1 Score: 91.3 bits (225), Expect = 9.690e-18
Identity = 54/171 (31.58%), Postives = 94/171 (54.97%), Query Frame = 1
Query:   22 DSGPDGLAAESTRLRVDGVIKDIISDHQGVIDKQIAT-DIIRKELLRLYDKPKVSQLEAVLFKRITEDEARHILFLPD-HDQAAHYPTLIANPPKG-APAEHPQRALQVPHLSLLYLHHLKRWDFVSAFVLSGGLHALCSLFTHDNLVVRMKAITSLVSITS--HPGFDWF 519
            +S P+G + E+  L +D   + ++      +  +IA  + + + L + ++ P +S++  +L + ++ D+ R  LF P   D A  YP L+ +PP G A   HPQR +Q P L+LL+L H+  W+ +  F+L  GLH +  LF  +NL VR +A+     I++     FDW+
Sbjct:    8 ESMPEGKSEEA--LSMDPTFRKVLDSCLAGMPPEIAVREQLSQGLTKHWEYPPISEMRMMLQEELSLDDCRRCLFTPTAEDMAVRYPRLVMSPPPGLATDSHPQRKIQAPTLTLLFLAHVHHWELMRPFILGRGLHVIVVLFGDENLYVRGQAVEIFHRISNGYDTDFDWW 176          
BLAST of mRNA_Ecto-sp13_S_contig15895.4325.1 vs. uniprot
Match: A0A8J5XSU0_DIALT (Uncharacterized protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XSU0_DIALT)

HSP 1 Score: 94.0 bits (232), Expect = 2.370e-17
Identity = 70/242 (28.93%), Postives = 107/242 (44.21%), Query Frame = 1
Query:  139 IRKELLRLYDKPKVSQLEAVLFKRITEDEARHILFLPDHDQAAHYPTLIANPPKGAPAEHPQRALQVPHLSLLYLHHLKRWDFVSAFVL-SGGLHALCSLFTHDNLVVRMKAITSLVSITSHPGFDWFAPPPGCIKGSANNSKTIKARLHRALLGLRSEPAFISGLIANSWSGGAAGDTDAPAIEATEGGRGGKTFPGACLMCLELLAMWLSWVRALHTVDGALRLSRPLLRAIEEWAGKGD 861
            I K L   +++P + +LE VL ++++ ++AR ILFLP+ D    Y    +  P G P EHP   +Q   + +LY+ H +    + AFV+ +GGL  L  L   DN+ +  +A+ +L S+T    FDW A PP                  R LL   ++ A                  D   + A EG    + FPG     L +LA WL  +R        LRL   +L  +  W+ + D
Sbjct:   28 IEKTLTERWERPPMEKLEQVLRRKLSINDARRILFLPEVDDFFDYAVAFSQRPPGCPPEHPLSKIQPLFMGMLYMVHREDERLMRAFVVRAGGLRTLVGLLADDNVYIVSQALDTLYSLTGL--FDWHADPPS----------------DRPLLQCMADLAH----------------ADVGFVRALEGCFENR-FPGCSFRALTILAFWLGLIRFFFCKGRVLRLGPDVLDLLHRWSVRRD 234          
BLAST of mRNA_Ecto-sp13_S_contig15895.4325.1 vs. uniprot
Match: A0A383VCU8_TETOB (Uncharacterized protein n=1 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383VCU8_TETOB)

HSP 1 Score: 80.9 bits (198), Expect = 2.550e-12
Identity = 77/300 (25.67%), Postives = 122/300 (40.67%), Query Frame = 1
Query:  151 LLRLYDKPKVSQLEAVLFKRITEDEARHILFLPDHDQAAHYPTLIANPPKGAPAEHPQRAL---QVPHLSLLYLHHLKRWDFVSAFVLSGGLHALCSLFTHDNLVVRMKAITSLVSITSHPGFDWFAPPP-----------------GCIKGSANNSKTIKARLHRALLGLRSEPAFISGLIANSWSGGAAGDTDAPAIEATEGGRGGK-------------------------TFPGACLMCLELLAMWLSWVRALHTVDGALRLSRPLLRAIEEWAGKGDEREGNIAWSDERLPLTTL 915
            L R   +P  + L AVL + +T+++AR +LF P+    A YP L+A  P   P +    A    Q   L  L+L H + W  +  F+ +GGL +L SL  H N ++  +A+  L+  T    +DW +PP                     +G+ +NS              +   A  +G  A   +       +APA  A+   +G                            +PG+    L+LLA +LSW+RA  +  G L+LS  LL  +  W+ +      + A S+ER     L
Sbjct:    5 LQRRLQQPPTALLSAVLEQELTDEQARQLLFFPEPADMALYPKLLAGDP-ACPTDLSSSAANKGQAAVLGHLFLVHGRSWQRLRPFIEAGGLRSLVSLLGHPNRLLASQALQLLLLATHPDMYDWHSPPDHNSXXXXXXXXXXXEPQALAEGTPSNSLETAISSEGTASVSKQAAADAAGEEAQLHN------PEAPAAAASHPSQGPDRQLWLQLLALHEGPLLPRLLALSPDAWPGSGQQALQLLAFYLSWLRACWSQGGVLQLSPGLLSGLAAWSAR------STASSEERQLAAAL 291          
BLAST of mRNA_Ecto-sp13_S_contig15895.4325.1 vs. uniprot
Match: A0A7S4FJA5_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4FJA5_9EUGL)

HSP 1 Score: 77.0 bits (188), Expect = 1.360e-11
Identity = 59/181 (32.60%), Postives = 84/181 (46.41%), Query Frame = 1
Query:  325 RALQVPHLSLLYLHHLKRWDFVSAFVLSGGLHALCSLFTHDNLVVRMKAITSLVSITS-HPG-FDWFAPPPGCIKGSANNSKTIKARLHRALLGLRSEPAFISGLIANSWSGGAAGDTDAPAIEATEGGRGGKTFPGACLMCLELLAMWLSWVRALHTVDGALRLSRPLLRAIEEWAGKGD 861
            R +Q P L+ LYL H   W+    F    GL  L  L    NL +R + +  L  +++ + G FDW+  P   ++  A     +    HR LL L S   F+   + N              I+       G+TFP   LMCL+LLA WLS+VR   T DG LRL + +L A++  A + D
Sbjct:    1 RKVQAPSLTCLYLLHHHDWERARPFAAGNGLRVLAGLVGDPNLYIRGQVVEMLHRLSNGYEGQFDWWDKPKD-LEDPAQGDVLV----HRRLLELHSTD-FLKNCLLN--------------IK-------GETFPEGSLMCLQLLAFWLSYVRHFWTKDGVLRLGQDVLDALKAHAARKD 154          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15895.4325.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
D7FUN1_ECTSI3.190e-29885.66Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KEI6_9PHAE3.130e-22586.51Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S2W3C3_9STRA8.810e-3937.97Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
C1FJK6_MICCC1.120e-3235.91Uncharacterized protein n=1 Tax=Micromonas commoda... [more]
A0A5A8C4V7_CAFRO6.330e-2530.74Uncharacterized protein n=3 Tax=Cafeteria roenberg... [more]
A0A7S1NC57_9EUGL9.690e-1831.58Hypothetical protein (Fragment) n=1 Tax=Eutreptiel... [more]
A0A8J5XSU0_DIALT2.370e-1728.93Uncharacterized protein n=1 Tax=Diacronema lutheri... [more]
A0A383VCU8_TETOB2.550e-1225.67Uncharacterized protein n=1 Tax=Tetradesmus obliqu... [more]
A0A7S4FJA5_9EUGL1.360e-1132.60Hypothetical protein n=1 Tax=Eutreptiella gymnasti... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15895contigEcto-sp13_S_contig15895:1263..4043 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score859.8
Seed ortholog evalue6.9e-247
Seed eggNOG ortholog2880.D7FUN1
Model size1596
Hectar predicted targeting categoryother localisation
Exons4
EggNOG OGs2CJJ3@1,2S3TT@2759
Cds size1596
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462839.4357154-CDS-Ecto-sp13_S_contig15895:1262..14091681462839.4357154-CDS-Ecto-sp13_S_contig15895:1262..1409Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15895 1263..1409 +
1681462839.445422-CDS-Ecto-sp13_S_contig15895:1845..20341681462839.445422-CDS-Ecto-sp13_S_contig15895:1845..2034Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15895 1846..2034 +
1681462839.4541602-CDS-Ecto-sp13_S_contig15895:2496..29101681462839.4541602-CDS-Ecto-sp13_S_contig15895:2496..2910Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15895 2497..2910 +
1681462839.4681935-CDS-Ecto-sp13_S_contig15895:3197..40431681462839.4681935-CDS-Ecto-sp13_S_contig15895:3197..4043Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15895 3198..4043 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15895.4325.1prot_Ecto-sp13_S_contig15895.4325.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig15895 1263..4043 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig15895.4325.1

>prot_Ecto-sp13_S_contig15895.4325.1 ID=prot_Ecto-sp13_S_contig15895.4325.1|Name=mRNA_Ecto-sp13_S_contig15895.4325.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=532bp
MAKVAQKDSGPDGLAAESTRLRVDGVIKDIISDHQGVIDKQIATDIIRKE
LLRLYDKPKVSQLEAVLFKRITEDEARHILFLPDHDQAAHYPTLIANPPK
GAPAEHPQRALQVPHLSLLYLHHLKRWDFVSAFVLSGGLHALCSLFTHDN
LVVRMKAITSLVSITSHPGFDWFAPPPGCIKGSANNSKTIKARLHRALLG
LRSEPAFISGLIANSWSGGAAGDTDAPAIEATEGGRGGKTFPGACLMCLE
LLAMWLSWVRALHTVDGALRLSRPLLRAIEEWAGKGDEREGNIAWSDERL
PLTTLPQTKKPCGDGKAEGEGALVVAGGDIVDVAAVGAAAVNEKGKSTPA
VVLTEKDSGAAAATEAAVEGDGSSTGLGAPAGDLEAETAAMIQAERKERA
EVLELSKKLVADFARFPPAEKDWEGVEEDGGERSGGDLPRGGGAAGPAPT
EEGRSSTAAVRGCCDDEARGSGDSGGREETSKAGGETRSFLPSEAAEAAP
ESPPTSAPTRKALALKIKGNEAFGGGDMQAAM
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mRNA from alignment at Ecto-sp13_S_contig15895:1263..4043+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig15895.4325.1 ID=mRNA_Ecto-sp13_S_contig15895.4325.1|Name=mRNA_Ecto-sp13_S_contig15895.4325.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2781bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15895:1263..4043+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCAAAGGTTGCACAGAAAGATAGCGGACCCGATGGGCTGGCTGCCGA ATCAACTCGCTTGAGAGTTGACGGTGTCATCAAAGATATCATCTCCGATC ATCAGGGTGTCATCGACAAACAAATCGCCACGGATATCATTCGAAAGGTG GGTGTGTACATGCAGCCTCAGGCTTACCATCAGCTCCGGGCTCAAGACCT CACCATCCCGTCCAAACGAACTATGCCAGCTTTTTCAGCACAAGTCTCAC TGTTTCGAGCGGGTGGTTTACAGAACCGAAGATACTCGATGAGAGATAAA TGAAAAAGATCAACACGCTTGTGGAATCCACCCAACTCACCACCACCGTC GACTGCCCGTGTTGTAGTCAAGGCATGGCAGTCTAGTGAGCACAAAATCA CTTCTATGTTTGTTTCTTTTCCGATATCAGCTGCTCCAAGAACGACAAGA ATGTCGTTGGATGCTTGTGAAGGTACTTCCTGGACATCCGAGGTGGTACT CATGCCCCCGCCCTCCTCTCCGCGCGCGCTCTCTCTCTCTCTCTCTCTCT CTCTCTCTCTCTCTCTCTACACGGCTGCAACAGGAGCTGTTAAGACTGTA CGACAAGCCCAAGGTGTCTCAGCTTGAGGCAGTTCTTTTCAAGAGGATCA CTGAGGATGAAGCCAGGCACATCTTGTTTCTTCCGGATCACGACCAAGCG GCGCACTACCCGACGTTGATCGCCAACCCTCCGAAGGGAGCGCCTGCGGA GCATCCCCAGCGCGCTCTCCAGGTGCCCGGGTCCTCCTTTTCGTCATGCC ATTGACAATCCGTCACTCGCAGGTTTCTCATGTAGAAACCAACGCGCTTT CCTCTCGAACTGAACTGCTCCAATTCGTGACTTCGCAGAAGAATTCCTCC GGAGTGTATTGCGTGCTTGTAGTCAAGGCGTGTGTTCGTTCTCGTTTTAC ACATAGTGTGGGTCCGACGAAGTATTGAAGACAGCACACACAAAATTTTT GAAAGAAATCAATGAATTTCGCAGCACACATATGTGCGTACATACATACA TCCTGCAGTTCCAGCATGGGGTGAGGAGTTGAACCAGACCGCATTCAAGC CAACGACCAATGTATGTGCTGACTGTCTTGTTCATGCACATATGTATCCC TTGTTGCTTGCTGGTTTGGACATGGAACGGAACAACGGTAAACAACGTCG ACGCCGCCACTACCGACGGCGACGGCAATGGCAGGTCCCGCACCTGAGCC TCCTGTACCTTCATCACTTGAAGCGGTGGGACTTCGTGTCCGCCTTCGTC CTATCGGGCGGCCTGCACGCCCTCTGCTCCTTGTTCACGCACGACAACCT CGTCGTCAGAATGAAGGCCATCACCAGCCTCGTCAGCATCACCTCCCACC CAGGCTTCGACTGGTTTGCCCCACCTCCTGGCTGCATCAAAGGCAGCGCA AACAACAGCAAAACAATTAAAGCAAGGCTGCACCGCGCACTACTAGGCCT CCGATCGGAGCCCGCGTTCATCTCCGGCCTCATCGCTAACTCTTGGAGCG GGGGTGCGGCCGGTGATACGGACGCACCGGCGATCGAAGCAACAGAGGGG GGTCGAGGAGGCAAGACGTTTCCCGGAGCTTGTCTGATGTGCCTGGAGGT GAGGCGACAGTTAAAACCCTCATGACGTCCACCAGCTCGCCGTGTCTTGT TGACAACTCGCAACAACACCTGTGTATAGGGCGGGTTACCGTGAATGGGT GTCAAGGCTGCCTGTGCACCTGCTACGAGCCTCTTGGTGTGGCAGCGTGC GGGTAGGTTTGAACAAGCACACGATCGCGTACATTGCCGTCCCTTGCCCC CCGTCTCCCTTCGTTGACACAGCGACCACCTCCTTTTCAATTCTCGCCCG TCAATACCTCCGCACTTGGTTGCGGGGCACCGCAGTTGCTGGCGATGTGG CTCAGCTGGGTCCGTGCCCTGCACACCGTGGACGGTGCGCTCCGGCTCAG CCGCCCCCTGCTCCGCGCCATCGAAGAGTGGGCGGGTAAAGGTGACGAGC GAGAGGGAAACATCGCGTGGAGTGATGAGAGGCTGCCATTGACGACCCTG CCGCAAACGAAGAAGCCGTGTGGCGACGGCAAGGCAGAGGGAGAAGGTGC TCTCGTCGTCGCTGGAGGAGACATTGTCGATGTTGCTGCTGTTGGAGCCG CTGCCGTAAACGAGAAGGGAAAATCAACTCCTGCGGTAGTGTTGACGGAG AAAGACTCAGGAGCAGCGGCGGCGACGGAGGCGGCGGTAGAGGGCGACGG GAGTTCGACCGGCTTAGGGGCGCCTGCCGGCGATCTCGAGGCCGAAACGG CGGCCATGATTCAGGCGGAACGCAAGGAGCGCGCCGAGGTGCTCGAGCTC TCAAAGAAGCTCGTGGCCGACTTCGCCCGTTTCCCCCCCGCGGAAAAGGA CTGGGAAGGGGTGGAAGAAGACGGCGGGGAGAGAAGTGGCGGCGATCTCC CGCGGGGAGGCGGAGCCGCAGGTCCGGCACCGACCGAGGAAGGAAGGTCG TCGACGGCAGCGGTTCGGGGCTGCTGCGACGATGAAGCGCGCGGTTCCGG CGACAGCGGCGGCAGAGAGGAAACAAGCAAAGCAGGCGGGGAGACACGCT CTTTTCTTCCGTCAGAAGCGGCAGAAGCAGCACCAGAGTCTCCCCCGACG TCAGCCCCCACTCGCAAAGCCCTCGCGCTCAAGATCAAAGGCAACGAAGC TTTCGGAGGGGGAGACATGCAAGCGGCGATG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15895:1263..4043+

>mRNA_Ecto-sp13_S_contig15895.4325.1 ID=mRNA_Ecto-sp13_S_contig15895.4325.1|Name=mRNA_Ecto-sp13_S_contig15895.4325.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1596bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15895:1263..4043+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCAAAGGTTGCACAGAAAGATAGCGGACCCGATGGGCTGGCTGCCGA
ATCAACTCGCTTGAGAGTTGACGGTGTCATCAAAGATATCATCTCCGATC
ATCAGGGTGTCATCGACAAACAAATCGCCACGGATATCATTCGAAAGGAG
CTGTTAAGACTGTACGACAAGCCCAAGGTGTCTCAGCTTGAGGCAGTTCT
TTTCAAGAGGATCACTGAGGATGAAGCCAGGCACATCTTGTTTCTTCCGG
ATCACGACCAAGCGGCGCACTACCCGACGTTGATCGCCAACCCTCCGAAG
GGAGCGCCTGCGGAGCATCCCCAGCGCGCTCTCCAGGTCCCGCACCTGAG
CCTCCTGTACCTTCATCACTTGAAGCGGTGGGACTTCGTGTCCGCCTTCG
TCCTATCGGGCGGCCTGCACGCCCTCTGCTCCTTGTTCACGCACGACAAC
CTCGTCGTCAGAATGAAGGCCATCACCAGCCTCGTCAGCATCACCTCCCA
CCCAGGCTTCGACTGGTTTGCCCCACCTCCTGGCTGCATCAAAGGCAGCG
CAAACAACAGCAAAACAATTAAAGCAAGGCTGCACCGCGCACTACTAGGC
CTCCGATCGGAGCCCGCGTTCATCTCCGGCCTCATCGCTAACTCTTGGAG
CGGGGGTGCGGCCGGTGATACGGACGCACCGGCGATCGAAGCAACAGAGG
GGGGTCGAGGAGGCAAGACGTTTCCCGGAGCTTGTCTGATGTGCCTGGAG
TTGCTGGCGATGTGGCTCAGCTGGGTCCGTGCCCTGCACACCGTGGACGG
TGCGCTCCGGCTCAGCCGCCCCCTGCTCCGCGCCATCGAAGAGTGGGCGG
GTAAAGGTGACGAGCGAGAGGGAAACATCGCGTGGAGTGATGAGAGGCTG
CCATTGACGACCCTGCCGCAAACGAAGAAGCCGTGTGGCGACGGCAAGGC
AGAGGGAGAAGGTGCTCTCGTCGTCGCTGGAGGAGACATTGTCGATGTTG
CTGCTGTTGGAGCCGCTGCCGTAAACGAGAAGGGAAAATCAACTCCTGCG
GTAGTGTTGACGGAGAAAGACTCAGGAGCAGCGGCGGCGACGGAGGCGGC
GGTAGAGGGCGACGGGAGTTCGACCGGCTTAGGGGCGCCTGCCGGCGATC
TCGAGGCCGAAACGGCGGCCATGATTCAGGCGGAACGCAAGGAGCGCGCC
GAGGTGCTCGAGCTCTCAAAGAAGCTCGTGGCCGACTTCGCCCGTTTCCC
CCCCGCGGAAAAGGACTGGGAAGGGGTGGAAGAAGACGGCGGGGAGAGAA
GTGGCGGCGATCTCCCGCGGGGAGGCGGAGCCGCAGGTCCGGCACCGACC
GAGGAAGGAAGGTCGTCGACGGCAGCGGTTCGGGGCTGCTGCGACGATGA
AGCGCGCGGTTCCGGCGACAGCGGCGGCAGAGAGGAAACAAGCAAAGCAG
GCGGGGAGACACGCTCTTTTCTTCCGTCAGAAGCGGCAGAAGCAGCACCA
GAGTCTCCCCCGACGTCAGCCCCCACTCGCAAAGCCCTCGCGCTCAAGAT
CAAAGGCAACGAAGCTTTCGGAGGGGGAGACATGCAAGCGGCGATG
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