mRNA_Ecto-sp13_S_contig15874.4314.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig15874.4314.1
Unique NamemRNA_Ecto-sp13_S_contig15874.4314.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig15874.4314.1 vs. uniprot
Match: A0A6H5KYC8_9PHAE (RNase III domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KYC8_9PHAE)

HSP 1 Score: 389 bits (998), Expect = 1.790e-130
Identity = 230/276 (83.33%), Postives = 238/276 (86.23%), Query Frame = 1 
Query:    1 QVVREFDGRLREFQGNVLQGGALSFSSRAFAGAFGEDEARFFSAVATGCPQRCALLDSVLDGSSMLRKHFDGAPPGAERVVMEVVLVPSELRLQTFTVVEFLLNNVLQPQGGSGEPADNPVLRLIRSAPHGDATIAFLLSIVTETATNLLLNTHQRATIAAGVALAPVAAPLYSPPVPNGLPTTASVYMSHPPPGSPMPPLSPPPLPGPGGGRGPPPHLRLPPPQIHLGLPRRKRSPPHRGGGPWGAAGPRXXXXXXXXXXXXXXXXXGGITRGRC 828
            +VVREFDGRLR+FQGNVL+GGALSFSSRAFAGAFGEDEARFFSAVATGCP+RCALLDSVLDGSSMLRKHFDGAPPGAERVVMEVVLVPSELRLQTFTVVEFLLNNVLQPQGGSGEPADNPVLRLIRSAPHGDATIAFL SIVTETATNLLLN HQRATI+AGVALAP+ APLY PPV                       LSPP LPGPGGGRGPPPHL LP  Q H  LPRRKRS PHRGGGPWG+A   XXXXXXXXXXXXXXXXXGGITRG+C
Sbjct:  251 EVVREFDGRLRDFQGNVLRGGALSFSSRAFAGAFGEDEARFFSAVATGCPERCALLDSVLDGSSMLRKHFDGAPPGAERVVMEVVLVPSELRLQTFTVVEFLLNNVLQPQGGSGEPADNPVLRLIRSAPHGDATIAFLSSIVTETATNLLLNAHQRATISAGVALAPLPAPLYGPPVXXXXXXXXXXXXXX------XXXLSPPHLPGPGGGRGPPPHLGLPSLQNHFSLPRRKRSHPHRGGGPWGSAXXXXXXXXXXXXXXXXXXXXGGITRGKC 520
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15874.4314.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KYC8_9PHAE1.790e-13083.33RNase III domain-containing protein n=2 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15874contigEcto-sp13_S_contig15874:2442..3607 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score414.1
Seed ortholog evalue5.2e-113
Seed eggNOG ortholog2880.D8LTJ8
Model size831
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.ribonuclease III activity
EggNOG OGsCOG0571@1,KOG1817@2759
Ec32 ortholog descriptionRNAseIII
Ec32 orthologEc-02_005870.1
Cds size831
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462838.7308712-CDS-Ecto-sp13_S_contig15874:2441..30201681462838.7308712-CDS-Ecto-sp13_S_contig15874:2441..3020Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15874 2442..3020 -
1681462838.7409558-CDS-Ecto-sp13_S_contig15874:3355..36071681462838.7409558-CDS-Ecto-sp13_S_contig15874:3355..3607Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15874 3356..3607 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15874.4314.1prot_Ecto-sp13_S_contig15874.4314.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig15874 2442..3607 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig15874.4314.1

>prot_Ecto-sp13_S_contig15874.4314.1 ID=prot_Ecto-sp13_S_contig15874.4314.1|Name=mRNA_Ecto-sp13_S_contig15874.4314.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=277bp
QVVREFDGRLREFQGNVLQGGALSFSSRAFAGAFGEDEARFFSAVATGCP
QRCALLDSVLDGSSMLRKHFDGAPPGAERVVMEVVLVPSELRLQTFTVVE
FLLNNVLQPQGGSGEPADNPVLRLIRSAPHGDATIAFLLSIVTETATNLL
LNTHQRATIAAGVALAPVAAPLYSPPVPNGLPTTASVYMSHPPPGSPMPP
LSPPPLPGPGGGRGPPPHLRLPPPQIHLGLPRRKRSPPHRGGGPWGAAGP
RGRGGRLGRRGGRGGRGGGGITRGRC*
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mRNA from alignment at Ecto-sp13_S_contig15874:2442..3607-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig15874.4314.1 ID=mRNA_Ecto-sp13_S_contig15874.4314.1|Name=mRNA_Ecto-sp13_S_contig15874.4314.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1166bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15874:2442..3607- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGTCGTACGCGAGTTCGATGGACGTCTCAGGGAGTTCCAAGGAAACGT
CCTCCAGGGGGGTGCGCTCAGCTTCTCGTCCAGGGCTTTCGCGGGTGCGT
TCGGGGAAGACGAGGCGCGATTCTTTTCAGCAGTCGCGACCGGCTGTCCT
CAACGGTGCGCCCTTCTCGACAGCGTTTTGGACGGCTCATCCATGCTGCG
TAAGCACTTCGACGGTGCTCCCCCGGGGGCTGAACGCGTGGTCATGGAAG
TGGTGAGTAGGCTGTGGTTGGTGCACGGCGGTGCTGCTGTCGGTGTTTTC
TGAATAGGAATACTGCTGTAGGTGCATGGACCAGGAGCTGTATTTGTATA
GTCTGCTCCAGGTGCGAGGGAGGTTCTTGACGGTCTCAGGCATTGCGGTG
CGCTTGCTAGGTTCCAGACCATGCGGCATAACCGGGACACCGCGCTGTTT
ACAACCGATGAAAAGAAGGTCAAGAGGCAGTGCAGCGGTACCTCCTTTTG
CCCATTCTGCGATCTTGCCCCAAGAGGTGACACCCATGGCATCGACAAGC
ATCCTTACACCCTCCGACGAACCTCTCGCCCTCCCAGGTGCTCGTCCCCT
CCGAACTCCGCCTCCAGACCTTCACGGTGGTGGAGTTCCTCCTCAACAAC
GTGCTGCAGCCACAGGGAGGCTCGGGCGAGCCAGCCGATAACCCCGTCCT
GCGGCTGATCCGGTCGGCTCCTCACGGCGACGCCACCATCGCCTTCCTGT
TGAGCATCGTCACCGAGACCGCCACCAACTTGCTCCTCAACACCCACCAG
AGAGCAACGATAGCAGCGGGCGTGGCGCTCGCCCCTGTCGCAGCACCCCT
CTACAGCCCTCCCGTCCCCAATGGTCTGCCGACTACGGCAAGCGTTTACA
TGAGTCACCCCCCGCCCGGCAGCCCGATGCCACCACTGTCACCCCCACCC
CTGCCGGGGCCAGGCGGCGGCCGTGGACCCCCCCCTCACCTGAGGCTTCC
ACCTCCGCAGATCCACCTTGGCTTGCCGCGACGAAAACGATCTCCTCCCC
ATCGAGGCGGCGGGCCTTGGGGTGCAGCAGGGCCCCGGGGTAGGGGTGGG
AGGTTAGGGCGAAGGGGTGGGCGCGGTGGGCGGGGAGGCGGTGGGATTAC
GAGGGGCAGGTGTTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15874:2442..3607-

>mRNA_Ecto-sp13_S_contig15874.4314.1 ID=mRNA_Ecto-sp13_S_contig15874.4314.1|Name=mRNA_Ecto-sp13_S_contig15874.4314.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=831bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15874:2442..3607- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGTCGTACGCGAGTTCGATGGACGTCTCAGGGAGTTCCAAGGAAACGT
CCTCCAGGGGGGTGCGCTCAGCTTCTCGTCCAGGGCTTTCGCGGGTGCGT
TCGGGGAAGACGAGGCGCGATTCTTTTCAGCAGTCGCGACCGGCTGTCCT
CAACGGTGCGCCCTTCTCGACAGCGTTTTGGACGGCTCATCCATGCTGCG
TAAGCACTTCGACGGTGCTCCCCCGGGGGCTGAACGCGTGGTCATGGAAG
TGGTGCTCGTCCCCTCCGAACTCCGCCTCCAGACCTTCACGGTGGTGGAG
TTCCTCCTCAACAACGTGCTGCAGCCACAGGGAGGCTCGGGCGAGCCAGC
CGATAACCCCGTCCTGCGGCTGATCCGGTCGGCTCCTCACGGCGACGCCA
CCATCGCCTTCCTGTTGAGCATCGTCACCGAGACCGCCACCAACTTGCTC
CTCAACACCCACCAGAGAGCAACGATAGCAGCGGGCGTGGCGCTCGCCCC
TGTCGCAGCACCCCTCTACAGCCCTCCCGTCCCCAATGGTCTGCCGACTA
CGGCAAGCGTTTACATGAGTCACCCCCCGCCCGGCAGCCCGATGCCACCA
CTGTCACCCCCACCCCTGCCGGGGCCAGGCGGCGGCCGTGGACCCCCCCC
TCACCTGAGGCTTCCACCTCCGCAGATCCACCTTGGCTTGCCGCGACGAA
AACGATCTCCTCCCCATCGAGGCGGCGGGCCTTGGGGTGCAGCAGGGCCC
CGGGGTAGGGGTGGGAGGTTAGGGCGAAGGGGTGGGCGCGGTGGGCGGGG
AGGCGGTGGGATTACGAGGGGCAGGTGTTGA
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