mRNA_Ecto-sp13_S_contig15871.4313.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig15871.4313.1 vs. uniprot
Match: A0A6H5KMW5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMW5_9PHAE) HSP 1 Score: 224 bits (572), Expect = 6.650e-68 Identity = 111/114 (97.37%), Postives = 111/114 (97.37%), Query Frame = 1
Query: 1 VMGGVSESGLRVVPGAGETDASIGSGSPAAAAVFSGEVKTSNSGGFVSIRTRNASPPLDLSAYDALRLRVKGDGNRYKFSIYDSPGWNSKAWCDTFDTVKGEWMDVDIPFSTLK 342
VMGGVSESGLRVVPGAGETDA SGSPAAAAVFSGEVKTSNSGGFVSIRTRNASPPLDLSAYDALRLRVKGDGNRYKFSIYDSPGWNSKAWCDTFDTVKGEWMDVDIPFSTLK
Sbjct: 314 VMGGVSESGLRVVPGAGETDAKSSSGSPAAAAVFSGEVKTSNSGGFVSIRTRNASPPLDLSAYDALRLRVKGDGNRYKFSIYDSPGWNSKAWCDTFDTVKGEWMDVDIPFSTLK 427
BLAST of mRNA_Ecto-sp13_S_contig15871.4313.1 vs. uniprot
Match: D8LL63_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LL63_ECTSI) HSP 1 Score: 217 bits (553), Expect = 8.370e-67 Identity = 107/114 (93.86%), Postives = 109/114 (95.61%), Query Frame = 1
Query: 1 VMGGVSESGLRVVPGAGETDASIGSGSPAAAAVFSGEVKTSNSGGFVSIRTRNASPPLDLSAYDALRLRVKGDGNRYKFSIYDSPGWNSKAWCDTFDTVKGEWMDVDIPFSTLK 342
VMGGVSESGL VVPGAGETD S SGSPAAAAVFSGEVKTSNSGGFVSIRTRNASPPLDLS YDALRLRVKGDGNRYKFSIYDSPGWNSKAWCDTFDTVKGEW+DVDIPF+TLK
Sbjct: 131 VMGGVSESGLGVVPGAGETDVSSSSGSPAAAAVFSGEVKTSNSGGFVSIRTRNASPPLDLSEYDALRLRVKGDGNRYKFSIYDSPGWNSKAWCDTFDTVKGEWIDVDIPFTTLK 244
BLAST of mRNA_Ecto-sp13_S_contig15871.4313.1 vs. uniprot
Match: A0A0G4FWF9_VITBC (Uncharacterized protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4FWF9_VITBC) HSP 1 Score: 137 bits (344), Expect = 8.750e-36 Identity = 70/113 (61.95%), Postives = 85/113 (75.22%), Query Frame = 1
Query: 1 VMGGVSESGLRVVPGAGE--TDASIGSGSPAAAAVFSGEVKTSNSGGFVSIRTRNASPPLDLSAYDALRLRVKGDGNRYKFSIYDSPGWNSKAWCDTFDTVKGEWMDVDIPFS 333
VMGGVSES +++ PGA E T A++ AAVFSGEVKT+N GGFVS+RTR PPLDLSAY+ LRLR+KGDG+RYK I D+ GW+S +W FDTVK EW+ VD+PFS
Sbjct: 187 VMGGVSESNIKLEPGAAEPNTGATV-------AAVFSGEVKTANFGGFVSVRTRKFDPPLDLSAYEGLRLRIKGDGSRYKMQIRDNAGWDSPSWGMGFDTVKDEWVTVDLPFS 292
BLAST of mRNA_Ecto-sp13_S_contig15871.4313.1 vs. uniprot
Match: A0A835ZH41_9STRA (Complex I intermediate-associated protein 30-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZH41_9STRA) HSP 1 Score: 133 bits (334), Expect = 1.120e-34 Identity = 67/113 (59.29%), Postives = 80/113 (70.80%), Query Frame = 1
Query: 1 VMGGVSESGLRVVPGAGETDASIGSGSPAAAAVFSGEVKTSNSGGFVSIRTRNASPPLDLSAYDALRLRVKGDGNRYKFSIYDSPGWNSKAWCDTFDTVKGEWMDVDIPFSTL 339
VMGGVS S L VVPG GE G ++AAVF G V +N+GGF S+R+RNASPP D S +DALRLRVKGDG RYKF++YD+ GW+ +W +FDT GEW DV PFS L
Sbjct: 238 VMGGVSTSELVVVPGEGEA------GGRSSAAVFRGTVSPANNGGFASVRSRNASPPWDWSQFDALRLRVKGDGFRYKFTVYDAAGWDRPSWSYSFDTAAGEWADVTFPFSAL 344
BLAST of mRNA_Ecto-sp13_S_contig15871.4313.1 vs. uniprot
Match: A0A7S2UWN3_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UWN3_9STRA) HSP 1 Score: 131 bits (329), Expect = 1.080e-33 Identity = 65/112 (58.04%), Postives = 80/112 (71.43%), Query Frame = 1
Query: 1 VMGGVSESGLRVVPGAGE--TDASIGSGSPAAAAVFSGEVKTSNSGGFVSIRTRNASPPLDLSAYDALRLRVKGDGNRYKFSIYDSPGWNSKAWCDTFDTVKGEWMDVDIPF 330
VMGG+S+S L VVPGAGE T + I AAVFSGEV T N+GGF S+RTRN PPLDLS++D + +R+KGDGNRYK + D W+ +WC +FDT G+WMDV IPF
Sbjct: 189 VMGGISKSSLSVVPGAGEEATGSRI-------AAVFSGEVSTDNNGGFASVRTRNLDPPLDLSSFDGIEMRLKGDGNRYKLMLRDETRWDGISWCYSFDTEAGKWMDVRIPF 293
BLAST of mRNA_Ecto-sp13_S_contig15871.4313.1 vs. uniprot
Match: A0A7S4DIU2_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DIU2_HETAK) HSP 1 Score: 124 bits (311), Expect = 7.490e-33 Identity = 67/111 (60.36%), Postives = 80/111 (72.07%), Query Frame = 1
Query: 1 VMGGVSESGLRVVPGAGE--TDASIGSGSPAAAAVFSGEVKTSNSGGFVSIRTRNASPPLDLSAYDALRLRVKGDGNRYKFSIYDSPGWNSKAWCDTFDTVKGEWMDVDIP 327
VMGGVSES L++VPGA E T A + AAVFSG VKT+N+GGF S+RTRN +P L+LS LRLRVKGDGNRYKF + D PGW+S + +FDTV GEW+ VD P
Sbjct: 95 VMGGVSESSLQLVPGAAEEPTGARL-------AAVFSGVVKTANNGGFASVRTRNFTPRLNLSGAQGLRLRVKGDGNRYKFILRDDPGWDSANFGFSFDTVAGEWITVDAP 198
BLAST of mRNA_Ecto-sp13_S_contig15871.4313.1 vs. uniprot
Match: UPI0019B55518 (CIA30 family protein n=3 Tax=Cyanobacteria TaxID=1117 RepID=UPI0019B55518) HSP 1 Score: 119 bits (298), Expect = 2.630e-31 Identity = 59/113 (52.21%), Postives = 75/113 (66.37%), Query Frame = 1
Query: 1 VMGGVSESGLRVVPGAGETDASIGSGSPAAAAVFSGEVKTSNSGGFVSIRTRNASPPLDLSAYDALRLRVKGDGNRYKFSIYDSPGWNSKAWCDTFDTVKGEWMDVDIPFSTL 339
VMGGVS+SG+++ GA AVFSG V T+NSGGF SIRTRN P +DLSA+ + LR+KGDGNRYKF + D GW++ + +FDTV GEW+ V IPF+ L
Sbjct: 69 VMGGVSDSGIQLENGA---------------AVFSGNVSTANSGGFASIRTRNFDPAIDLSAFTGIELRIKGDGNRYKFLVRDDDGWDTVGYSHSFDTVSGEWITVQIPFAQL 166
BLAST of mRNA_Ecto-sp13_S_contig15871.4313.1 vs. uniprot
Match: A0A0S3TYT0_9CYAN (CIA30 domain-containing protein n=2 Tax=Pseudanabaenales TaxID=2881377 RepID=A0A0S3TYT0_9CYAN) HSP 1 Score: 118 bits (295), Expect = 7.250e-31 Identity = 61/113 (53.98%), Postives = 73/113 (64.60%), Query Frame = 1
Query: 1 VMGGVSESGLRVVPGAGETDASIGSGSPAAAAVFSGEVKTSNSGGFVSIRTRNASPPLDLSAYDALRLRVKGDGNRYKFSIYDSPGWNSKAWCDTFDTVKGEWMDVDIPFSTL 339
VMGGVS+SG+R+ GA AVFSG V T+NSGGF SIRTRN P +DLS + + LRVKGDGNRYKF + D GW+S + +FDTV EW+ V IPFS L
Sbjct: 69 VMGGVSDSGVRLENGA---------------AVFSGNVSTANSGGFASIRTRNFEPAIDLSNFTGIELRVKGDGNRYKFLVRDGDGWDSVGYSHSFDTVANEWITVQIPFSEL 166
BLAST of mRNA_Ecto-sp13_S_contig15871.4313.1 vs. uniprot
Match: A0A1Z4JIV9_LEPBY (CIA30 domain-containing protein n=2 Tax=Leptolyngbya TaxID=47251 RepID=A0A1Z4JIV9_LEPBY) HSP 1 Score: 115 bits (289), Expect = 5.100e-30 Identity = 59/111 (53.15%), Postives = 70/111 (63.06%), Query Frame = 1
Query: 1 VMGGVSESGLRVVPGAGETDASIGSGSPAAAAVFSGEVKTSNSGGFVSIRTRNASPPLDLSAYDALRLRVKGDGNRYKFSIYDSPGWNSKAWCDTFDTVKGEWMDVDIPFS 333
VMGGVS SG+R+ G AVF+G V NSGGF S+RTRN PPLDLS + LR+KGDGNRYKF I DS GW+S + +FDTV GEWM + IPF+
Sbjct: 64 VMGGVSNSGIRLEGGV---------------AVFTGNVSIENSGGFASVRTRNFDPPLDLSNRSGVELRIKGDGNRYKFLIRDSDGWDSTGYSYSFDTVAGEWMTIQIPFA 159
BLAST of mRNA_Ecto-sp13_S_contig15871.4313.1 vs. uniprot
Match: K9S7G1_9CYAN (NADH:ubiquinone oxidoreductase complex I intermediate-associated protein 30 n=1 Tax=Geitlerinema sp. PCC 7407 TaxID=1173025 RepID=K9S7G1_9CYAN) HSP 1 Score: 118 bits (295), Expect = 1.940e-29 Identity = 59/113 (52.21%), Postives = 74/113 (65.49%), Query Frame = 1
Query: 1 VMGGVSESGLRVVPGAGETDASIGSGSPAAAAVFSGEVKTSNSGGFVSIRTRNASPPLDLSAYDALRLRVKGDGNRYKFSIYDSPGWNSKAWCDTFDTVKGEWMDVDIPFSTL 339
VMGGVSESGLR+ P + A F+G V T+NSGGF S+RTRN PPL+LS YD + LRV+GDG RYKF + GW+S A+C +FDTV G+W +V +PF L
Sbjct: 178 VMGGVSESGLRLGPNS---------------AFFTGVVSTANSGGFASVRTRNFEPPLNLSPYDGVALRVRGDGQRYKFMLRTEGGWDSVAYCASFDTVAGQWCEVRLPFREL 275 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15871.4313.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig15871.4313.1 >prot_Ecto-sp13_S_contig15871.4313.1 ID=prot_Ecto-sp13_S_contig15871.4313.1|Name=mRNA_Ecto-sp13_S_contig15871.4313.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=114bp MGGVSESGLRVVPGAGETDASIGSGSPAAAAVFSGEVKTSNSGGFVSIRTback to top mRNA from alignment at Ecto-sp13_S_contig15871:504..1277+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig15871.4313.1 ID=mRNA_Ecto-sp13_S_contig15871.4313.1|Name=mRNA_Ecto-sp13_S_contig15871.4313.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=774bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15871:504..1277+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15871:504..1277+ >mRNA_Ecto-sp13_S_contig15871.4313.1 ID=mRNA_Ecto-sp13_S_contig15871.4313.1|Name=mRNA_Ecto-sp13_S_contig15871.4313.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=342bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15871:504..1277+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |