mRNA_Ecto-sp13_S_contig1587.4312.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1587.4312.1
Unique NamemRNA_Ecto-sp13_S_contig1587.4312.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1587.4312.1 vs. uniprot
Match: A0A6H5KA42_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA42_9PHAE)

HSP 1 Score: 328 bits (842), Expect = 7.800e-98
Identity = 241/307 (78.50%), Postives = 245/307 (79.80%), Query Frame = 1 
Query:  235 MQMDDGWHPSG--------AIMVGPLTPSMPDHHRPGEQPMWDGPPGDDFGLPHHGMMMGGDVRRGGHFSRDFDDAEPPPGFIPFDLRAMDGGDGEPGYXXXXXXXXXXXXXXXXXXXAGDFHDDDDPHAFHXXXXXXXXXXXXSGGTAAFHDGDSTGTLRLNTPEFLTVPAGPDGRFTKKQRKLQRRHMKQLXXXXXXXXXXXXXXHTQEMDHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEHDQQEPFIPSIHGTRGQRRENFGPAAAPATTGFITGRRVNDDGGGAGFLGDDAFGPLSS 1131
            MQMDDGWHPSG        AIMVGPLTPSMPDHHRPGEQPMWDGPP DDFGLPHHGM+MGGDVRR G F RDFDD EPPPGFIPFDLRAMDGGDGEPGYXXXXXXXXXXXXXXXXXXXAG FHDD       XXXXXXXXXXXX   TAAFHDGDSTGTLRLNTPEF TVPAGPDGRFTKKQRKLQRRH+KQL XXXXXXXXXXXXX       XXXX            XXXXXXXXXXXX           PFIPSIHGTRGQR ENFGPAAA ATTGF+TGRR ND+G GAG  GDDAFGPLSS
Sbjct:    1 MQMDDGWHPSGXXXXXXXXAIMVGPLTPSMPDHHRPGEQPMWDGPPADDFGLPHHGMIMGGDVRRVGDFGRDFDDTEPPPGFIPFDLRAMDGGDGEPGYXXXXXXXXXXXXXXXXXXXAGGFHDDXXXXXXXXXXXXXXXXXXXXXXTAAFHDGDSTGTLRLNTPEFFTVPAGPDGRFTKKQRKLQRRHVKQLQXXXXXXXXXXXXXXXXXXXXXXXXQQFQQPPLDHPQXXXXXXXXXXXX-----------PFIPSIHGTRGQRHENFGPAAAAATTGFLTGRRANDNGAGAGLHGDDAFGPLSS 296
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1587.4312.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KA42_9PHAE7.800e-9878.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1587contigEcto-sp13_S_contig1587:15302..16433 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size1134
Hectar predicted targeting categorymitochondrion
Exons1
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-01_009860.1
Cds size1131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462838.6277504-CDS-Ecto-sp13_S_contig1587:15301..164321681462838.6277504-CDS-Ecto-sp13_S_contig1587:15301..16432Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1587 15302..16432 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1587.4312.1prot_Ecto-sp13_S_contig1587.4312.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1587 15302..16432 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1587.4312.1

>prot_Ecto-sp13_S_contig1587.4312.1 ID=prot_Ecto-sp13_S_contig1587.4312.1|Name=mRNA_Ecto-sp13_S_contig1587.4312.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=377bp
YPKAIVLPPHHRTLSPRPCSWAPCARRMPPKAKTKPKKRKPPRPARQQHR
PGPPHGDFDGAGLPPPPFHRRRQQQQRGMQMDDGWHPSGAIMVGPLTPSM
PDHHRPGEQPMWDGPPGDDFGLPHHGMMMGGDVRRGGHFSRDFDDAEPPP
GFIPFDLRAMDGGDGEPGYGEPDYSEQGYGEQGYGEPGAGDFHDDDDPHA
FHQQQHHPNYRPPPSGGTAAFHDGDSTGTLRLNTPEFLTVPAGPDGRFTK
KQRKLQRRHMKQLQLQQRQLQRHQHQHHTQEMDHHHQKQQQHFQQPPWDH
PQQQQQQHHHHHHHHHNEHDQQEPFIPSIHGTRGQRRENFGPAAAPATTG
FITGRRVNDDGGGAGFLGDDAFGPLSS
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mRNA from alignment at Ecto-sp13_S_contig1587:15302..16433+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1587.4312.1 ID=mRNA_Ecto-sp13_S_contig1587.4312.1|Name=mRNA_Ecto-sp13_S_contig1587.4312.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1132bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1587:15302..16433+ (Ectocarpus species13 EcNAP12_S_4_19m)
TACCCCAAGGCTATCGTCCTTCCGCCGCACCACCGTACCCTCTCTCCCCG
ACCTTGCTCGTGGGCTCCCTGCGCGCGAAGGATGCCTCCTAAGGCAAAGA
CGAAACCGAAGAAAAGAAAGCCGCCGAGACCGGCGCGCCAGCAACATCGT
CCGGGTCCCCCCCACGGCGACTTCGACGGCGCCGGCCTTCCTCCTCCTCC
TTTTCACCGCCGGCGGCAACAGCAGCAGCGGGGAATGCAGATGGACGACG
GCTGGCATCCAAGCGGGGCCATAATGGTGGGCCCACTCACCCCTTCGATG
CCAGACCATCACCGGCCGGGCGAACAACCCATGTGGGACGGCCCTCCTGG
CGACGACTTCGGGTTACCTCACCACGGGATGATGATGGGCGGCGATGTCC
GTCGTGGTGGACACTTTAGCCGAGACTTCGACGATGCCGAACCGCCGCCG
GGGTTCATCCCGTTTGATTTACGAGCAATGGACGGAGGTGACGGTGAGCC
AGGTTACGGCGAGCCAGATTACAGTGAGCAGGGTTACGGTGAGCAGGGTT
ACGGTGAGCCAGGGGCTGGTGATTTCCACGATGATGATGATCCGCACGCC
TTCCACCAACAGCAGCACCACCCCAATTACCGACCACCGCCATCAGGAGG
CACGGCAGCGTTTCACGACGGTGATAGCACAGGCACGTTGCGACTAAACA
CACCGGAGTTCTTAACTGTGCCCGCTGGGCCGGACGGTCGTTTCACCAAG
AAGCAGCGGAAGCTACAGAGGCGGCATATGAAGCAGCTGCAGCTGCAGCA
GCGGCAACTACAGCGACATCAACACCAACACCACACACAAGAGATGGACC
ACCACCACCAGAAGCAGCAGCAGCACTTCCAGCAGCCTCCGTGGGACCAC
CCGCAGCAGCAGCAGCAGCAGCACCACCACCACCACCACCACCACCACAA
CGAGCACGACCAGCAAGAGCCCTTCATACCATCGATACACGGGACGCGCG
GGCAAAGGCGCGAAAACTTTGGGCCTGCCGCCGCCCCCGCCACCACGGGG
TTTATTACGGGGAGGAGGGTGAACGACGACGGCGGCGGGGCCGGCTTCCT
CGGGGACGACGCCTTTGGGCCTCTCTCTTCTT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1587:15302..16433+

>mRNA_Ecto-sp13_S_contig1587.4312.1 ID=mRNA_Ecto-sp13_S_contig1587.4312.1|Name=mRNA_Ecto-sp13_S_contig1587.4312.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1131bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1587:15302..16433+ (Ectocarpus species13 EcNAP12_S_4_19m)
TACCCCAAGGCTATCGTCCTTCCGCCGCACCACCGTACCCTCTCTCCCCG
ACCTTGCTCGTGGGCTCCCTGCGCGCGAAGGATGCCTCCTAAGGCAAAGA
CGAAACCGAAGAAAAGAAAGCCGCCGAGACCGGCGCGCCAGCAACATCGT
CCGGGTCCCCCCCACGGCGACTTCGACGGCGCCGGCCTTCCTCCTCCTCC
TTTTCACCGCCGGCGGCAACAGCAGCAGCGGGGAATGCAGATGGACGACG
GCTGGCATCCAAGCGGGGCCATAATGGTGGGCCCACTCACCCCTTCGATG
CCAGACCATCACCGGCCGGGCGAACAACCCATGTGGGACGGCCCTCCTGG
CGACGACTTCGGGTTACCTCACCACGGGATGATGATGGGCGGCGATGTCC
GTCGTGGTGGACACTTTAGCCGAGACTTCGACGATGCCGAACCGCCGCCG
GGGTTCATCCCGTTTGATTTACGAGCAATGGACGGAGGTGACGGTGAGCC
AGGTTACGGCGAGCCAGATTACAGTGAGCAGGGTTACGGTGAGCAGGGTT
ACGGTGAGCCAGGGGCTGGTGATTTCCACGATGATGATGATCCGCACGCC
TTCCACCAACAGCAGCACCACCCCAATTACCGACCACCGCCATCAGGAGG
CACGGCAGCGTTTCACGACGGTGATAGCACAGGCACGTTGCGACTAAACA
CACCGGAGTTCTTAACTGTGCCCGCTGGGCCGGACGGTCGTTTCACCAAG
AAGCAGCGGAAGCTACAGAGGCGGCATATGAAGCAGCTGCAGCTGCAGCA
GCGGCAACTACAGCGACATCAACACCAACACCACACACAAGAGATGGACC
ACCACCACCAGAAGCAGCAGCAGCACTTCCAGCAGCCTCCGTGGGACCAC
CCGCAGCAGCAGCAGCAGCAGCACCACCACCACCACCACCACCACCACAA
CGAGCACGACCAGCAAGAGCCCTTCATACCATCGATACACGGGACGCGCG
GGCAAAGGCGCGAAAACTTTGGGCCTGCCGCCGCCCCCGCCACCACGGGG
TTTATTACGGGGAGGAGGGTGAACGACGACGGCGGCGGGGCCGGCTTCCT
CGGGGACGACGCCTTTGGGCCTCTCTCTTCT
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