prot_Ecto-sp13_S_contig15854.4306.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig15854.4306.1
Unique Nameprot_Ecto-sp13_S_contig15854.4306.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length183
Homology
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BLAST of mRNA_Ecto-sp13_S_contig15854.4306.1 vs. uniprot
Match: D8LSA3_ECTSI (PHD finger protein-related n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSA3_ECTSI)

HSP 1 Score: 202 bits (515), Expect = 7.420e-64
Identity = 119/125 (95.20%), Postives = 122/125 (97.60%), Query Frame = 0 
Query:    1 KSRTKKGAPKTRRRARAAEGPVPDGWRTPEIRALEDQINSRIDLVLRMADEKWRLAQHAYDRLDVNIRXXXXXXXXXXXXXRRQGLLPPREVSATPPSRKRRRSGAEKTDEAESDWLGLSLSERV 125
            KSRTKKGAPKTR +ARA EGPVPDGWRTPEIRALEDQINSRIDLVLRMADEKWRLAQHAYDRLDVNIRXXXXXXXXXXXXXRRQGL+PPREVSATPPSRKRRRSGAEKTDE +SDWLGLSLSERV
Sbjct:   25 KSRTKKGAPKTRPQARATEGPVPDGWRTPEIRALEDQINSRIDLVLRMADEKWRLAQHAYDRLDVNIRXXXXXXXXXXXXXRRQGLIPPREVSATPPSRKRRRSGAEKTDEPDSDWLGLSLSERV 149
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BLAST of mRNA_Ecto-sp13_S_contig15854.4306.1 vs. uniprot
Match: A0A6H5L498_9PHAE (Inhibitor of growth protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L498_9PHAE)

HSP 1 Score: 201 bits (512), Expect = 1.660e-61
Identity = 119/124 (95.97%), Postives = 121/124 (97.58%), Query Frame = 0 
Query:    1 KSRTKKGAPKTRRRARAAEGPVPDGWRTPEIRALEDQINSRIDLVLRMADEKWRLAQHAYDRLDVNIRXXXXXXXXXXXXXRRQGLLPPREVSATPPSRKRRRSGAEKTDEAESDWLGLSLSER 124
            KSRTKKGAPKTR +ARA +GPVPDGWRTPEIRALEDQINSRIDLVLRMADEKWRLAQHAYDRLDVNIRXXXXXXXXXXXXXRRQGLLPPREVSATPPSRKRRRSGAEKTDE ESDWLGLSLSER
Sbjct:   83 KSRTKKGAPKTRPQARATKGPVPDGWRTPEIRALEDQINSRIDLVLRMADEKWRLAQHAYDRLDVNIRXXXXXXXXXXXXXRRQGLLPPREVSATPPSRKRRRSGAEKTDEPESDWLGLSLSER 206
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15854.4306.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LSA3_ECTSI7.420e-6495.20PHD finger protein-related n=1 Tax=Ectocarpus sili... [more]
A0A6H5L498_9PHAE1.660e-6195.97Inhibitor of growth protein n=1 Tax=Ectocarpus sp.... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR024610Inhibitor of growth protein, N-terminal histone-bindingPFAMPF12998INGcoord: 32..75
e-value: 4.3E-5
score: 24.0

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15854contigEcto-sp13_S_contig15854:1170..2834 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15854.4306.1mRNA_Ecto-sp13_S_contig15854.4306.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig15854 1170..2834 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig15854.4306.1 ID=prot_Ecto-sp13_S_contig15854.4306.1|Name=mRNA_Ecto-sp13_S_contig15854.4306.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=183bp
KSRTKKGAPKTRRRARAAEGPVPDGWRTPEIRALEDQINSRIDLVLRMAD
EKWRLAQHAYDRLDVNIRRLDADLGRMETDLRRQGLLPPREVSATPPSRK
RRRSGAEKTDEAESDWLGLSLSERVSVVEDQGVAYSQEVCAPGHKWGNRR
AMEACTALFRCLSPSERGSAVLLRCCGSTWFSS
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR024610ING_N_histone_binding