prot_Ecto-sp13_S_contig15831.4296.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_Ecto-sp13_S_contig15831.4296.1
Unique Name	prot_Ecto-sp13_S_contig15831.4296.1
Type	polypeptide
Organism	Ectocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length	252

Homology

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BLAST of mRNA_Ecto-sp13_S_contig15831.4296.1 vs. uniprot
Match: D7G2W7_ECTSI (Transient Receptor Potential Channel n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2W7_ECTSI)

HSP 1 Score: 349 bits (896), Expect = 7.600e-115
Identity = 194/246 (78.86%), Postives = 199/246 (80.89%), Query Frame = 0

Query:    6 WQTLQCILLLNIVISILLDAFQMVQKRNSVVAADTLWQTVMTTLGRWRIRLTHVGFALVHRCSSRTRRSSPRVSSXXXXXAGTTVVKNPMHDRHGGWKLRRXXXXXXXXXXXXXXXXXXXXXXXXXVAGLPVAPPGITGPSSRSAPSLPMSDKRKVSSKNRGGGATNKGGLTGGQRLAMSHRHYELRAAVEVLRRSPLPEAAVWRKMRQIIEARLGWVSEGVGNRGKPLQPGAAWGRSQSRRFSKR 251
            +QTLQCILLLNIVISILLDAFQMVQKRNSVVAADTLWQTVMTTLGRWRIRLTHVGFALV RC S TRRSSPR SS     AGTTVVKNPMHDRHGG KLR+                          AG+PVAPPGITG SSR  P LP SDKRKVSSKNRGGGAT +GGLT GQRLAMSHRHY+LR AVEVLRRSPLPEAAVWRKMRQII ARLGWVSEG GN GKPLQPGAAWGRSQSRRFSKR
Sbjct:  332 YQTLQCILLLNIVISILLDAFQMVQKRNSVVAADTLWQTVMTTLGRWRIRLTHVGFALVGRCPSVTRRSSPRGSSVGDD-AGTTVVKNPMHDRHGGRKLRQRHQHTAPTAGGTSAAAVAA------AAGVPVAPPGITGSSSRGVPLLPSSDKRKVSSKNRGGGATKRGGLTRGQRLAMSHRHYDLRTAVEVLRRSPLPEAAVWRKMRQIIGARLGWVSEGAGNTGKPLQPGAAWGRSQSRRFSKR 570

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BLAST of mRNA_Ecto-sp13_S_contig15831.4296.1 vs. uniprot
Match: A0A6H5KPV8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPV8_9PHAE)

HSP 1 Score: 280 bits (717), Expect = 4.180e-92
Identity = 176/246 (71.54%), Postives = 182/246 (73.98%), Query Frame = 0

Query:    6 WQTLQCILLLNIVISILLDAFQMVQKRNSVVAADTLWQTVMTTLGRWRIRLTHVGFA--------------------------------LVHRCSSRTRRSSPRVSSXXXXXAGTTVVKNPMHDRHGGWKLRRXXXXXXXXXXXXXXXXXXXXXXXXXVAGLPVAPPGITGPSSRSAPSLPMSDKRKVSSKNRGGGATNKGGLTGGQRLAMSHRHYELRAAVEVLRRSPLPEAAVWRKMRQIIEAR 219
            +QTLQCILLLNIVISILLDAFQMVQ R+SVVAADTLWQTVMTTLGRWRIRLTH+GFA                                LVHRCSS TRRSS R        AGTTVV+NPMHDRHGGWKLRR        XXXXXXXXXXX      V G+PVAPPGITG SSR APSLP SDKRKVSSKNRGGGAT +GGLTGGQRLAMSHRHYEL AAVEVLRRSPLPEAAVWRKMRQII AR
Sbjct:   16 YQTLQCILLLNIVISILLDAFQMVQTRDSVVAADTLWQTVMTTLGRWRIRLTHMGFAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXALVHRCSSGTRRSSDRGDD-----AGTTVVRNPMHDRHGGWKLRRRHQRTAPTXXXXXXXXXXX------VTGVPVAPPGITGSSSRGAPSLPTSDKRKVSSKNRGGGATRRGGLTGGQRLAMSHRHYELHAAVEVLRRSPLPEAAVWRKMRQIIGAR 250

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp13_S_contig15831.4296.1 vs. uniprot

BLAST of mRNA_Ecto-sp13_S_contig15831.4296.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
D7G2W7_ECTSI	7.600e-115	78.86	Transient Receptor Potential Channel n=1 Tax=Ectoc...	[more]
A0A6H5KPV8_9PHAE	4.180e-92	71.54	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 27..251
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 1..5
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 6..26

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp13_S_contig15831	contig	Ecto-sp13_S_contig15831:1135..3583 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.0	2022-07-08

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp13_S_contig15831.4296.1	mRNA_Ecto-sp13_S_contig15831.4296.1	Ectocarpus species13 EcNAP12_S_4_19m	mRNA	Ecto-sp13_S_contig15831 1135..3583 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_Ecto-sp13_S_contig15831.4296.1 ID=prot_Ecto-sp13_S_contig15831.4296.1|Name=mRNA_Ecto-sp13_S_contig15831.4296.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=252bp
LLFCLWQTLQCILLLNIVISILLDAFQMVQKRNSVVAADTLWQTVMTTLG
RWRIRLTHVGFALVHRCSSRTRRSSPRVSSSDDDDAGTTVVKNPMHDRHG
GWKLRRRHQHQHTASTGGGTSAAAAAAAAAAVAGLPVAPPGITGPSSRSA
PSLPMSDKRKVSSKNRGGGATNKGGLTGGQRLAMSHRHYELRAAVEVLRR
SPLPEAAVWRKMRQIIEARLGWVSEGVGNRGKPLQPGAAWGRSQSRRFSK
R*