mRNA_Ecto-sp13_S_contig15807.4279.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig15807.4279.1
Unique NamemRNA_Ecto-sp13_S_contig15807.4279.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig15807.4279.1 vs. uniprot
Match: D7G990_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G990_ECTSI)

HSP 1 Score: 363 bits (933), Expect = 1.780e-121
Identity = 220/247 (89.07%), Postives = 231/247 (93.52%), Query Frame = 1 
Query:    1 HYGLVLPYGSGLTKELQAATLQLREDGTLIDIEEAYLDPSAVCVPVTSSEEEASNMTISDVSGVFFVLGLFVVAATVSWCFRRSPWAKRARERRRLEKGGAAEQSVMDSYAKMSRGQQKAFAMQATVNLLQHSRELSASSKTLMEGISEVAKKAPDAAGXXXXXXXXXXXXXXXXXXXXXXXXRAAPTEANFRREMAEGRPIVGIGGGVVDSGRDFTRQAPSLSGFLSRLPWRRGGG-AGENGGNPT 738
            HYGLVLPYGSGLT+ELQAATLQLREDGTL DIEE YLDPSAVCVPVT+SEEE+SNMT+SDVSGVFFVLG FV+AATVSWCFRRSPWAKRA+ERRRLEKGGAAEQSVMDSYAKMSRGQQKAFAMQATVNLLQHSRELSASSKTLMEGISE AKK PDAAGXXXXXXXXXXXXXXXXXXXXXXX RAAP EA FRREMAEGRP+VGIGGG+ DS + FTR+APSLSG LSRLP RRGGG A  +GGNPT
Sbjct:   61 HYGLVLPYGSGLTEELQAATLQLREDGTLSDIEETYLDPSAVCVPVTTSEEESSNMTVSDVSGVFFVLGFFVIAATVSWCFRRSPWAKRAKERRRLEKGGAAEQSVMDSYAKMSRGQQKAFAMQATVNLLQHSRELSASSKTLMEGISEGAKKVPDAAGXXXXXXXXXXXXXXXXXXXXXXX-RAAPGEAEFRREMAEGRPVVGIGGGMGDSDQGFTRRAPSLSGLLSRLPGRRGGGGAXGDGGNPT 306
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BLAST of mRNA_Ecto-sp13_S_contig15807.4279.1 vs. uniprot
Match: A0A6H5JES6_9PHAE (PBPe domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JES6_9PHAE)

HSP 1 Score: 77.0 bits (188), Expect = 1.080e-11
Identity = 37/41 (90.24%), Postives = 40/41 (97.56%), Query Frame = 1 
Query:   55 ATLQLREDGTLIDIEEAYLDPSAVCVPVTSSEEEASNMTIS 177
            ATLQLREDGTLIDIEE+YLDPS VCVPVT+SEEE+SNMTIS
Sbjct:  441 ATLQLREDGTLIDIEESYLDPSVVCVPVTTSEEESSNMTIS 481
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15807.4279.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G990_ECTSI1.780e-12189.07Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JES6_9PHAE1.080e-1190.24PBPe domain-containing protein n=1 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15807contigEcto-sp13_S_contig15807:2..4010 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score68.6
Seed ortholog evalue7.5e-09
Seed eggNOG ortholog2880.D7FGS3
Model size1152
Hectar predicted targeting categoryother localisation
Exons4
EggNOG free text desc.NMDA glutamate receptor activity
EggNOG OGsKOG4440@1,KOG4440@2759
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-00_011350.1
Cds size1152
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462836.030844-CDS-Ecto-sp13_S_contig15807:1..7511681462836.030844-CDS-Ecto-sp13_S_contig15807:1..751Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15807 2..751 -
1681462836.041002-CDS-Ecto-sp13_S_contig15807:1450..16751681462836.041002-CDS-Ecto-sp13_S_contig15807:1450..1675Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15807 1451..1675 -
1681462836.049454-CDS-Ecto-sp13_S_contig15807:3279..34021681462836.049454-CDS-Ecto-sp13_S_contig15807:3279..3402Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15807 3280..3402 -
1681462836.057836-CDS-Ecto-sp13_S_contig15807:3956..40101681462836.057836-CDS-Ecto-sp13_S_contig15807:3956..4010Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15807 3957..4010 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15807.4279.1prot_Ecto-sp13_S_contig15807.4279.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig15807 2..4010 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig15807.4279.1

>prot_Ecto-sp13_S_contig15807.4279.1 ID=prot_Ecto-sp13_S_contig15807.4279.1|Name=mRNA_Ecto-sp13_S_contig15807.4279.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=384bp
HYGLVLPYGSGLTKELQAATLQLREDGTLIDIEEAYLDPSAVCVPVTSSE
EEASNMTISDVSGVFFVLGLFVVAATVSWCFRRSPWAKRARERRRLEKGG
AAEQSVMDSYAKMSRGQQKAFAMQATVNLLQHSRELSASSKTLMEGISEV
AKKAPDAAGAAAAAAPPNPATGDAGGGGEDGGRRAAPTEANFRREMAEGR
PIVGIGGGVVDSGRDFTRQAPSLSGFLSRLPWRRGGGAGENGGNPTREPD
QRRRRRDSGRGSGSGGLNLNPDPMMYLVGGDRESESWSSTGSPVPVPPPH
SPRQGRRSLVVGASSSNRAVKRGQGVGGAATPPATAASTGAAAKIVSTVH
DGEDAGGMERESNAPRGLVHPVAGSGSAGAGTAA
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mRNA from alignment at Ecto-sp13_S_contig15807:2..4010-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig15807.4279.1 ID=mRNA_Ecto-sp13_S_contig15807.4279.1|Name=mRNA_Ecto-sp13_S_contig15807.4279.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4009bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15807:2..4010- (Ectocarpus species13 EcNAP12_S_4_19m)
CACTACGGCCTGGTACTTCCTTACGGGTCGGGGTTGACAAAAGAGCTGCA
AGCGGTGAGAGCCTAACTTTCGCAAAGCCAGCAGCAGCACACCGTGTAAA
ACCTGCGCCCTTTTTTTTGTTGGACGTGTTGCAGTCACTACTTCAGTGTC
CCGTTCCTGCATTGAAAGGGTGGCATGAATAGAAAGGCGAGCAACGAGAG
TTTTCATTCGGGTGTATGCCCTGCGAGAACGCCGTTCTTTTTACGCCGCT
ATTTGCGGATGTTTTGCAAAGCGTGCCGACTGTCTTGTTGCGTGGTATGG
TACTAATTCGGCGTGTGTTGTTGGTGTCCACGAAACAAGAAACAACGGAG
GATAAACACAATCAACTTTTGGGCCGATGCGCGGAGAGAACATCCCTTTG
CGTGACGAGTTTTTCCGTCCTTTTTTTCTTCTGCGTGAACCATGCATTTG
GTTTACTTTTTTTGACGTGACACCCTCGATTTTACTGCCTGCGAAAGGGC
GGCGTTGGTAGGCAATCATGATTTGCTCGTGTGTGCCTGGTTATTTGGAT
GACTAGACGCACTTTGGGCGCGGTTCCAAACACGCCGAAACACCTACATA
AAACGCAGGCGACGCTGCAGCTGAGGGAGGACGGCACTCTGATCGATATC
GAGGAAGCCTACCTCGACCCCTCCGCTGTGTGCGTCCCCGTCACCTCCAG
CGAGGAGGAGGCGTCCAACATGACAATCTCGGTAAGAAATGCTCGTCGAG
CATGACAGACGCGGAAAGAAATGCTCGTCGAGCATGACAGTTTCGGTGAG
AAATGCTCGTCGAACTTGACCGCCTCGGTATGAAACTGCAACGTCTTTCT
CTTGTTGGCAAGTTCGCGTTCCTTGTTTTTTTGGTATTGTGTTCCTACAG
AGGCTATGGCGGCCAGGCAGCAATCACAGATCATCGCGGGAGTTCCACGA
GGCAATTCTACCGCTCGCATTTCGAGGGGGTATTGTTATCTCGAAAGTCG
AGCGGTAGAATGGCCTCGTGGAACTCCCGCGAAGATCTGTTATTGCTGCC
TGTCCGCCGCGTGAACGTCTCGCATGGTATCTGCAGGTGTACCAGCGTCC
TAAAGGATCGTCCTACACGATGTAATACAACACTTTCTCCTCTTGGATAA
CGATAAGTGTATGTGCGTCTTTTTCTGGTGGCGGTGTTCCTAGAGTCTGC
AGGTTAACCAGTGTCCGAAAGGGTCGTGCTTCACTATCCTACTGCCGTAC
GTTTGTGTGCTCTAGTTTGCCCGTACGGAAAACATGGAATGGAAGTGTAG
AAGTTCTGAAGCGAAATATGATTGCTGCAGGTGCTGTCGGGTGAAGGGAA
CCAACGGCGATCAGGCTGTCATGGGTGAATGATGAAGGGAGGAGGGAGAG
CGGCTTGAGTAGTTGACACCTCTGCGTGACCGTCGTCGCGGTACCAACCA
ATCGTTCTTTTGTTGTTTGTTGCTGCAACAGCTTTCTTTTCAAGCGTATT
TCATAGGAAAGTTGTCATGAACCTGGTTGTATTATTGTTTTGGAGCATGC
ACATGTGGTCCATTCAACATTGTGGCGATCCGAAACAACACACACGCCAA
CGAAATAGCCATTTAATTTGAAAGCAAACAGCACGCTTTAGACGCCACCT
GTTGTCATGGCTTGTTTTCATCTTGTCCGCTCCTGCCGCCGCTGCCGCTC
CTGCTGCCGCTTTGTTCTGTTCTCTTCTTGTTTATGCCTCTGCCTGCCTG
TCCTTCTCTCTATTTGTTCTCTCTTTGCCTCTGTCTGTCTTGTCTGTCTG
TCTGTGTGTGTCTCTCTTTGTGTGTCTCTATGTGTCTCTCTCTGTCTGTA
TATATCTCTCCCTTTCTCCGCCCTGTCTCTCTTTGTCTGTCTCTCCGCCT
GTATGCGTGTGTGTGTTCTCTCTATTTGTTCTCTCTTTGTCTCTGTCTGT
CTTGTCTGTCTGTCTGTGTGTGTCTCTCTCTGTGTGTCTCTATGTGTCTC
TCTCTGTCTGTATATATCTCTCCCTTTCTCCGCCTCTGTCTCTCTGTGTC
TGTCTCTCCGCCTGTATGCGTGTGGGTGTGTCTCTCTCTCCCGCTCTCTC
CCTCTCTCTGTCCCTCCCTCTCTCTCTTTCTGTCTCTCCATCCCTCTCTC
TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC
TCTCCCTCTCCCTCTCCCTCTCCCTCTCTCTCTCCCTCTCTCTCCCTCTC
TTGCCGTGTTCGCACCCACCGCCTCGCAAAAAAAAATAACACGGACGGTG
TAACTGAAAAAACGCAACGCAACGTAACGTAACAGGACGTCTCCGGAGTC
TTCTTCGTGCTGGGGTTGTTCGTCGTCGCCGCCACGGTCTCCTGGTGCTT
CCGCCGGTCTCCCTGGGCGAAGCGAGCGAGGGAGCGGCGGCGGCTGGAGA
AAGGCGGCGCCGCCGAGCAGTCCGTCATGGACAGTTATGCGAAGATGTCG
AGGGGACAGCAGAAGGCCTTCGCCATGCAGGCCACTGTAAACCTCTTGCA
GCATTCGAGGGTGCGTGCGTGTACGCTCGCGGCGGGGGGGGAGAGGGGGT
ACTCATGTTTTTCATGCCTTAGCGGTTAGACCACTGACCTCGAGAGGAGG
GAGCATTTTTCCAACAGGACCGATCACTGGGGGGGGGGGGGTCGTCGTTG
TGGCCGCCGCGAGGCCACGCCTGCAGAGCTGCACTCAGTGAAAGAAATGA
GGTGCAGCTGCTGCTGCTTCATCTTTCCTCGGTTTGCTGCGTTGTCCTTT
TCGGCTCCGCATCTACCATGTTTGTTTGTTGCCGGTGGTGCGTTGGGTGC
CATGGCGCAGCCGCAGCAATTGGAATTCGGACTGCTCTTATTTGTAGTCC
TTCTGTACCACGTACTTCTCAAGCCCACCGGTCGATCACCCGTGAATGTG
GTACGACACAACCAACCTTGGATACATCCACCCGGCTATTAAAAATGGCG
CGTGCGTACATGCGGAAGAAGAATAAGGCGGTGGAGATACTGCATCACCT
CCTTGCAAGTTTAGCTTTGCGAGTATGGTAAGTATCCGCGCGCGCGTGGA
GTCAGCGGGGCGTTGTTCGTTTGTGTGTGGATTCAGGTCCAGAATACAAA
ATTCGTCAAGGCATCCATGCAACTGACCGCCCGCCCACGTCCGCCCATTC
CGGCCGGCCGGCCGACCATTTTTGTTCGCACCCATTGTCGGTCCCGCGCA
AACAAACAGGAGCTGAGCGCGTCGTCAAAGACGCTCATGGAAGGCATCAG
CGAAGTCGCAAAGAAGGCTCCTGACGCAGCAGGGGCAGCAGCGGCAGCAG
CGCCGCCAAACCCAGCGACAGGAGACGCCGGGGGAGGAGGAGAAGACGGT
GGTCGACGGGCAGCGCCGACGGAAGCGAATTTCCGGCGGGAGATGGCAGA
GGGGCGTCCGATCGTTGGAATCGGCGGCGGCGTGGTCGACAGCGGTCGGG
ACTTCACGCGGCAGGCCCCCTCGCTGAGCGGCTTCTTGAGCAGGCTCCCG
TGGAGACGCGGCGGCGGCGCGGGGGAGAACGGGGGTAACCCTACCCGTGA
GCCCGACCAGCGGCGGCGGCGGCGGGATAGCGGCCGCGGCAGCGGCAGCG
GCGGGCTAAACTTAAACCCGGATCCGATGATGTACCTCGTTGGCGGTGAT
AGGGAAAGCGAGTCGTGGTCCTCGACGGGGTCTCCCGTTCCGGTCCCCCC
GCCCCACTCTCCGCGGCAAGGTAGAAGGTCGCTGGTGGTTGGGGCCTCCT
CATCCAACCGGGCGGTTAAGCGAGGGCAGGGGGTTGGTGGCGCCGCTACT
CCTCCCGCTACTGCCGCTAGCACCGGTGCTGCTGCTAAGATAGTGTCGAC
GGTGCACGACGGAGAGGACGCGGGCGGCATGGAGAGAGAGAGCAACGCGC
CGCGTGGGTTGGTTCACCCTGTCGCGGGTTCCGGTTCTGCCGGAGCAGGA
ACAGCAGCA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15807:2..4010-

>mRNA_Ecto-sp13_S_contig15807.4279.1 ID=mRNA_Ecto-sp13_S_contig15807.4279.1|Name=mRNA_Ecto-sp13_S_contig15807.4279.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1152bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15807:2..4010- (Ectocarpus species13 EcNAP12_S_4_19m)
CACTACGGCCTGGTACTTCCTTACGGGTCGGGGTTGACAAAAGAGCTGCA
AGCGGCGACGCTGCAGCTGAGGGAGGACGGCACTCTGATCGATATCGAGG
AAGCCTACCTCGACCCCTCCGCTGTGTGCGTCCCCGTCACCTCCAGCGAG
GAGGAGGCGTCCAACATGACAATCTCGGACGTCTCCGGAGTCTTCTTCGT
GCTGGGGTTGTTCGTCGTCGCCGCCACGGTCTCCTGGTGCTTCCGCCGGT
CTCCCTGGGCGAAGCGAGCGAGGGAGCGGCGGCGGCTGGAGAAAGGCGGC
GCCGCCGAGCAGTCCGTCATGGACAGTTATGCGAAGATGTCGAGGGGACA
GCAGAAGGCCTTCGCCATGCAGGCCACTGTAAACCTCTTGCAGCATTCGA
GGGAGCTGAGCGCGTCGTCAAAGACGCTCATGGAAGGCATCAGCGAAGTC
GCAAAGAAGGCTCCTGACGCAGCAGGGGCAGCAGCGGCAGCAGCGCCGCC
AAACCCAGCGACAGGAGACGCCGGGGGAGGAGGAGAAGACGGTGGTCGAC
GGGCAGCGCCGACGGAAGCGAATTTCCGGCGGGAGATGGCAGAGGGGCGT
CCGATCGTTGGAATCGGCGGCGGCGTGGTCGACAGCGGTCGGGACTTCAC
GCGGCAGGCCCCCTCGCTGAGCGGCTTCTTGAGCAGGCTCCCGTGGAGAC
GCGGCGGCGGCGCGGGGGAGAACGGGGGTAACCCTACCCGTGAGCCCGAC
CAGCGGCGGCGGCGGCGGGATAGCGGCCGCGGCAGCGGCAGCGGCGGGCT
AAACTTAAACCCGGATCCGATGATGTACCTCGTTGGCGGTGATAGGGAAA
GCGAGTCGTGGTCCTCGACGGGGTCTCCCGTTCCGGTCCCCCCGCCCCAC
TCTCCGCGGCAAGGTAGAAGGTCGCTGGTGGTTGGGGCCTCCTCATCCAA
CCGGGCGGTTAAGCGAGGGCAGGGGGTTGGTGGCGCCGCTACTCCTCCCG
CTACTGCCGCTAGCACCGGTGCTGCTGCTAAGATAGTGTCGACGGTGCAC
GACGGAGAGGACGCGGGCGGCATGGAGAGAGAGAGCAACGCGCCGCGTGG
GTTGGTTCACCCTGTCGCGGGTTCCGGTTCTGCCGGAGCAGGAACAGCAG
CA
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