mRNA_Ecto-sp13_S_contig15799.4270.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig15799.4270.1
Unique NamemRNA_Ecto-sp13_S_contig15799.4270.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig15799.4270.1 vs. uniprot
Match: A0A6H5KCU2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCU2_9PHAE)

HSP 1 Score: 94.0 bits (232), Expect = 1.220e-20
Identity = 42/47 (89.36%), Postives = 43/47 (91.49%), Query Frame = 2 
Query:  131 SPEQVPADRELQYLCPRTGCNTNLS*KETIRKDRADYPACRNLSAGT 271
            SPEQVPADRELQYLCPRTGCNTNL  KE IRKDRADYPACRN +AGT
Sbjct:   52 SPEQVPADRELQYLCPRTGCNTNLFLKENIRKDRADYPACRNFNAGT 98
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BLAST of mRNA_Ecto-sp13_S_contig15799.4270.1 vs. uniprot
Match: D8LKW7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKW7_ECTSI)

HSP 1 Score: 81.3 bits (199), Expect = 2.060e-16
Identity = 32/35 (91.43%), Postives = 33/35 (94.29%), Query Frame = 3 
Query:  273 TCAWTGLLIKHPGKVCWLCASEFEVGEVVWAYTIP 377
            TC WTGLLIK+PG VCWLCASEFEVGEVVWAYTIP
Sbjct:  136 TCVWTGLLIKYPGNVCWLCASEFEVGEVVWAYTIP 170
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BLAST of mRNA_Ecto-sp13_S_contig15799.4270.1 vs. uniprot
Match: D7FWQ2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWQ2_ECTSI)

HSP 1 Score: 76.6 bits (187), Expect = 2.160e-15
Identity = 35/45 (77.78%), Postives = 36/45 (80.00%), Query Frame = 2 
Query:  128 GSPEQVPADRELQYLCPRTGCNTNLS*KETIRKDRADYPACRNLS 262
            GS EQVPADRE QYLCP TGCNTNL  KE I K RADYPACR L+
Sbjct:   83 GSAEQVPADRESQYLCPGTGCNTNLFLKENIHKGRADYPACRTLA 127
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BLAST of mRNA_Ecto-sp13_S_contig15799.4270.1 vs. uniprot
Match: D8LET1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LET1_ECTSI)

HSP 1 Score: 71.6 bits (174), Expect = 1.150e-12
Identity = 36/47 (76.60%), Postives = 37/47 (78.72%), Query Frame = 3 
Query:  237 TTPRAGT*APAPTCAWTGLLIKHPGKVCWLCASEFEVGEVVWAYTIP 377
            TTP AGT AP P      LLIK+PGKVCWLCASEFEVGEVVWAYT P
Sbjct:   92 TTP-AGTLAPVPA----RLLIKYPGKVCWLCASEFEVGEVVWAYTTP 133
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15799.4270.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5KCU2_9PHAE1.220e-2089.36Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LKW7_ECTSI2.060e-1691.43Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FWQ2_ECTSI2.160e-1577.78Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LET1_ECTSI1.150e-1276.60Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15799contigEcto-sp13_S_contig15799:147..524 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size378
Hectar predicted targeting categoryother localisation
Exons1
Cds size297
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462835.139757-CDS-Ecto-sp13_S_contig15799:146..4431681462835.139757-CDS-Ecto-sp13_S_contig15799:146..443Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15799 147..443 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462835.1503413-UTR-Ecto-sp13_S_contig15799:443..5241681462835.1503413-UTR-Ecto-sp13_S_contig15799:443..524Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig15799 444..524 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15799.4270.1prot_Ecto-sp13_S_contig15799.4270.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig15799 147..443 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig15799.4270.1

>prot_Ecto-sp13_S_contig15799.4270.1 ID=prot_Ecto-sp13_S_contig15799.4270.1|Name=mRNA_Ecto-sp13_S_contig15799.4270.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=99bp
LQPRYQPIALHRWILSAGCFYGCSYPAARARRRLICECWLFCRLARASPG
RPRAAIPLPTHRLQHQPLVKGNYPQRQGRLPRVQELERRHLPARGPAF*
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mRNA from alignment at Ecto-sp13_S_contig15799:147..524+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig15799.4270.1 ID=mRNA_Ecto-sp13_S_contig15799.4270.1|Name=mRNA_Ecto-sp13_S_contig15799.4270.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=378bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15799:147..524+ (Ectocarpus species13 EcNAP12_S_4_19m)
CTCCAGCCCCGCTACCAACCCATCGCCCTCCACCGCTGGATCCTTTCCGC
CGGCTGCTTCTACGGCTGCTCCTACCCCGCTGCCCGCGCGCGGAGGCGGC
TCATCTGCGAGTGCTGGCTCTTCTGCCGGCTCGCCCGAGCAAGTCCCGGC
CGACCGCGAGCTGCAATACCTCTGCCCACGCACCGGTTGCAACACCAACC
TCTCGTGAAAGGAAACTATCCGCAAAGACAGGGCCGACTACCCCGCGTGC
AGGAACTTGAGCGCCGGCACCTACCTGCGCGTGGACCGGCCTTTTGATCA
AGCACCCCGGAAAGGTCTGCTGGCTCTGCGCCTCCGAGTTCGAGGTCGGC
GAAGTGGTGTGGGCATACACCATCCCAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15799:147..524+

>mRNA_Ecto-sp13_S_contig15799.4270.1 ID=mRNA_Ecto-sp13_S_contig15799.4270.1|Name=mRNA_Ecto-sp13_S_contig15799.4270.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=297bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15799:147..524+ (Ectocarpus species13 EcNAP12_S_4_19m)
CTCCAGCCCCGCTACCAACCCATCGCCCTCCACCGCTGGATCCTTTCCGC
CGGCTGCTTCTACGGCTGCTCCTACCCCGCTGCCCGCGCGCGGAGGCGGC
TCATCTGCGAGTGCTGGCTCTTCTGCCGGCTCGCCCGAGCAAGTCCCGGC
CGACCGCGAGCTGCAATACCTCTGCCCACGCACCGGTTGCAACACCAACC
TCTCGTGAAAGGAAACTATCCGCAAAGACAGGGCCGACTACCCCGCGTGC
AGGAACTTGAGCGCCGGCACCTACCTGCGCGTGGACCGGCCTTTTGA
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