prot_Ecto-sp13_S_contig15797.4269.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig15797.4269.1
Unique Nameprot_Ecto-sp13_S_contig15797.4269.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length54
Homology
BLAST of mRNA_Ecto-sp13_S_contig15797.4269.1 vs. uniprot
Match: D7FR23_ECTSI (KRR-R motif-containing protein 1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FR23_ECTSI)

HSP 1 Score: 96.3 bits (238), Expect = 3.130e-22
Identity = 48/48 (100.00%), Postives = 48/48 (100.00%), Query Frame = 0
Query:    1 MVRNKERFVKRRARLVGPDGSTLKALELLTGCYVLVQGNTVSAMGSYQ 48
            MVRNKERFVKRRARLVGPDGSTLKALELLTGCYVLVQGNTVSAMGSYQ
Sbjct:  128 MVRNKERFVKRRARLVGPDGSTLKALELLTGCYVLVQGNTVSAMGSYQ 175          
BLAST of mRNA_Ecto-sp13_S_contig15797.4269.1 vs. uniprot
Match: A0A2J7ZQ21_9CHLO (KRR1 small subunit processome component (Fragment) n=1 Tax=Tetrabaena socialis TaxID=47790 RepID=A0A2J7ZQ21_9CHLO)

HSP 1 Score: 85.5 bits (210), Expect = 1.650e-20
Identity = 39/48 (81.25%), Postives = 47/48 (97.92%), Query Frame = 0
Query:    1 MVRNKERFVKRRARLVGPDGSTLKALELLTGCYVLVQGNTVSAMGSYQ 48
            ++RNKE+FVKRRARL+GP+GSTLKALELLTGCY+LVQGNTVSAMG ++
Sbjct:    2 IIRNKEKFVKRRARLIGPNGSTLKALELLTGCYILVQGNTVSAMGPFK 49          
BLAST of mRNA_Ecto-sp13_S_contig15797.4269.1 vs. uniprot
Match: A0A2D4C0W2_PYTIN (KRR1 small subunit processome component n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C0W2_PYTIN)

HSP 1 Score: 91.3 bits (225), Expect = 2.220e-20
Identity = 44/48 (91.67%), Postives = 47/48 (97.92%), Query Frame = 0
Query:    1 MVRNKERFVKRRARLVGPDGSTLKALELLTGCYVLVQGNTVSAMGSYQ 48
            +VRNKERFVKRR RLVGPDG+TLKA+ELLTGCYVLVQGNTVSAMGSYQ
Sbjct:  157 LVRNKERFVKRRQRLVGPDGATLKAIELLTGCYVLVQGNTVSAMGSYQ 204          
BLAST of mRNA_Ecto-sp13_S_contig15797.4269.1 vs. uniprot
Match: M4BMI4_HYAAE (KRR1 small subunit processome component n=2 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BMI4_HYAAE)

HSP 1 Score: 88.6 bits (218), Expect = 7.610e-20
Identity = 43/48 (89.58%), Postives = 46/48 (95.83%), Query Frame = 0
Query:    1 MVRNKERFVKRRARLVGPDGSTLKALELLTGCYVLVQGNTVSAMGSYQ 48
            +VRNKERFVKRR RLVGPDG+TLKA+ELLT CYVLVQGNTVSAMGSYQ
Sbjct:  159 LVRNKERFVKRRQRLVGPDGATLKAIELLTDCYVLVQGNTVSAMGSYQ 206          
BLAST of mRNA_Ecto-sp13_S_contig15797.4269.1 vs. uniprot
Match: A0A0B7G3P4_THACB (KRR1 small subunit processome component n=2 Tax=Rhizoctonia solani TaxID=456999 RepID=A0A0B7G3P4_THACB)

HSP 1 Score: 89.0 bits (219), Expect = 1.050e-19
Identity = 42/49 (85.71%), Postives = 46/49 (93.88%), Query Frame = 0
Query:    1 MVRNKERFVKRRARLVGPDGSTLKALELLTGCYVLVQGNTVSAMGSYQA 49
            MVRNKERFVKRR R++GPDGSTLKA+ELLTGCYVLVQGNTVS MG Y+A
Sbjct:   52 MVRNKERFVKRRQRIIGPDGSTLKAIELLTGCYVLVQGNTVSVMGPYKA 100          
BLAST of mRNA_Ecto-sp13_S_contig15797.4269.1 vs. uniprot
Match: A0A7R9YG52_9STRA (KRR1 small subunit processome component n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YG52_9STRA)

HSP 1 Score: 88.6 bits (218), Expect = 1.390e-19
Identity = 43/48 (89.58%), Postives = 46/48 (95.83%), Query Frame = 0
Query:    1 MVRNKERFVKRRARLVGPDGSTLKALELLTGCYVLVQGNTVSAMGSYQ 48
            +VRNKERFVKRR RL+GPDGSTLKALELLTGCYVLVQGNTVSAMG Y+
Sbjct:  138 LVRNKERFVKRRQRLLGPDGSTLKALELLTGCYVLVQGNTVSAMGPYK 185          
BLAST of mRNA_Ecto-sp13_S_contig15797.4269.1 vs. uniprot
Match: K3WI00_GLOUD (KRR1 small subunit processome component n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WI00_GLOUD)

HSP 1 Score: 89.0 bits (219), Expect = 1.500e-19
Identity = 43/48 (89.58%), Postives = 46/48 (95.83%), Query Frame = 0
Query:    1 MVRNKERFVKRRARLVGPDGSTLKALELLTGCYVLVQGNTVSAMGSYQ 48
            +VRNKERFVKRR RLVGPDG+TLKA+ELLT CYVLVQGNTVSAMGSYQ
Sbjct:  156 LVRNKERFVKRRQRLVGPDGATLKAIELLTNCYVLVQGNTVSAMGSYQ 203          
BLAST of mRNA_Ecto-sp13_S_contig15797.4269.1 vs. uniprot
Match: A0A8K1C3X6_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C3X6_PYTOL)

HSP 1 Score: 88.6 bits (218), Expect = 2.120e-19
Identity = 43/48 (89.58%), Postives = 46/48 (95.83%), Query Frame = 0
Query:    1 MVRNKERFVKRRARLVGPDGSTLKALELLTGCYVLVQGNTVSAMGSYQ 48
            +VRNKERFVKRR RLVGPDG+TLKA+ELLT CYVLVQGNTVSAMGSYQ
Sbjct:  159 LVRNKERFVKRRQRLVGPDGATLKAVELLTNCYVLVQGNTVSAMGSYQ 206          
BLAST of mRNA_Ecto-sp13_S_contig15797.4269.1 vs. uniprot
Match: A0A0C3B124_9AGAM (KRR1 small subunit processome component n=1 Tax=Serendipita vermifera MAFF 305830 TaxID=933852 RepID=A0A0C3B124_9AGAM)

HSP 1 Score: 88.2 bits (217), Expect = 2.230e-19
Identity = 41/49 (83.67%), Postives = 47/49 (95.92%), Query Frame = 0
Query:    1 MVRNKERFVKRRARLVGPDGSTLKALELLTGCYVLVQGNTVSAMGSYQA 49
            +VRNKERFVKRR R++GPDGSTLKA+ELLTGCYVLVQGNTVSAMG Y++
Sbjct:  142 LVRNKERFVKRRQRIIGPDGSTLKAIELLTGCYVLVQGNTVSAMGPYKS 190          
BLAST of mRNA_Ecto-sp13_S_contig15797.4269.1 vs. uniprot
Match: A0A836CN64_9STRA (KRR1 small subunit processome component n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CN64_9STRA)

HSP 1 Score: 88.2 bits (217), Expect = 2.440e-19
Identity = 42/47 (89.36%), Postives = 45/47 (95.74%), Query Frame = 0
Query:    1 MVRNKERFVKRRARLVGPDGSTLKALELLTGCYVLVQGNTVSAMGSY 47
            MVRNKERFVKRR RLVGPDG+TLKALELLTGCY+LVQGNTV+ MGSY
Sbjct:  146 MVRNKERFVKRRQRLVGPDGATLKALELLTGCYILVQGNTVACMGSY 192          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15797.4269.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FR23_ECTSI3.130e-22100.00KRR-R motif-containing protein 1 n=1 Tax=Ectocarpu... [more]
A0A2J7ZQ21_9CHLO1.650e-2081.25KRR1 small subunit processome component (Fragment)... [more]
A0A2D4C0W2_PYTIN2.220e-2091.67KRR1 small subunit processome component n=1 Tax=Py... [more]
M4BMI4_HYAAE7.610e-2089.58KRR1 small subunit processome component n=2 Tax=Hy... [more]
A0A0B7G3P4_THACB1.050e-1985.71KRR1 small subunit processome component n=2 Tax=Rh... [more]
A0A7R9YG52_9STRA1.390e-1989.58KRR1 small subunit processome component n=1 Tax=Pi... [more]
K3WI00_GLOUD1.500e-1989.58KRR1 small subunit processome component n=1 Tax=Gl... [more]
A0A8K1C3X6_PYTOL2.120e-1989.58Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A0C3B124_9AGAM2.230e-1983.67KRR1 small subunit processome component n=1 Tax=Se... [more]
A0A836CN64_9STRA2.440e-1989.36KRR1 small subunit processome component n=1 Tax=Tr... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036612K Homology domain, type 1 superfamilyGENE3D3.30.1370.10coord: 1..52
e-value: 4.2E-22
score: 79.9
IPR036612K Homology domain, type 1 superfamilySUPERFAMILY54791Eukaryotic type KH-domain (KH-domain type I)coord: 7..50
IPR024166Ribosomal RNA assembly KRR1PANTHERPTHR12581HIV-1 REV BINDING PROTEIN 2, 3coord: 1..48

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15797contigEcto-sp13_S_contig15797:2435..2596 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15797.4269.1mRNA_Ecto-sp13_S_contig15797.4269.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig15797 2435..2620 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig15797.4269.1 ID=prot_Ecto-sp13_S_contig15797.4269.1|Name=mRNA_Ecto-sp13_S_contig15797.4269.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=54bp
MVRNKERFVKRRARLVGPDGSTLKALELLTGCYVLVQGNTVSAMGSYQAR
LRS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036612KH_dom_type_1_sf
IPR024166rRNA_assembly_KRR1