mRNA_Ecto-sp13_S_contig15789.4260.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig15789.4260.1
Unique NamemRNA_Ecto-sp13_S_contig15789.4260.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig15789.4260.1 vs. uniprot
Match: D7G6T4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6T4_ECTSI)

HSP 1 Score: 298 bits (762), Expect = 3.110e-92
Identity = 157/173 (90.75%), Postives = 162/173 (93.64%), Query Frame = 1 
Query:  322 IHRDAAKQGVMVDVRRFRLAAEVDGQPSTYLTGTDLIRAWEQQDDGKTAVRREAIDGPYEMYTAAEVADKVHEDERANEAPAEQDARRYFAEGFVVPKPXXXXXXXXXKQALDDGNFSVKCDRWSPEGTPDDPKFNIRKSEFVHNVENHPAAMLPLVQYIDGFNANGMQTKAS 840
            I+ DAAK GVMVDVRRFRLAAEVDGQ S+YL GTDLIRAWEQQDDGKTAVRRE IDGP EMYTAAEVADKVHEDE ANEAPAEQDARRYFAEGFVVPKPXXXXXXXXXK+ALDDGN SV CDRWSPEGT DDPKF+IRKSEF+HNVENHPAAMLPLVQYIDGFNANGMQTK S
Sbjct:  295 IYWDAAKLGVMVDVRRFRLAAEVDGQSSSYLAGTDLIRAWEQQDDGKTAVRREVIDGPCEMYTAAEVADKVHEDEGANEAPAEQDARRYFAEGFVVPKPXXXXXXXXXKRALDDGNVSVTCDRWSPEGTSDDPKFSIRKSEFMHNVENHPAAMLPLVQYIDGFNANGMQTKNS 467
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BLAST of mRNA_Ecto-sp13_S_contig15789.4260.1 vs. uniprot
Match: A0A6H5J9K9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9K9_9PHAE)

HSP 1 Score: 84.3 bits (207), Expect = 2.740e-15
Identity = 48/115 (41.74%), Postives = 68/115 (59.13%), Query Frame = 2 
Query:    2 NLVVDRLLRSAPSMEEMLSNQGGKQLSRDETAAAGLASTHIFSVPEEKADGTKGDNQNGELARSTPHFGFDGIMVGMDGKRKVYVNDIVMCTL-DGVDDAQPCRILAIYIGTQQS 343
            NL+V+R ++S   +E  + N GGK L  +E    GL+S H+ SVP E A      + +G LARS+P FGFDG++      RKVYVND+VM T+ DG  +  P  +L  Y   +Q+
Sbjct:  115 NLLVNRKIQSPSFIETCVQNSGGKVLRAEEAEPNGLSSNHLCSVPTEPAGNALSTSMHGRLARSSPFFGFDGLLGARTSNRKVYVNDVVMVTMSDG--NTVPVWLLEWYWDMEQA 227
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15789.4260.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G6T4_ECTSI3.110e-9290.75Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5J9K9_9PHAE2.740e-1541.74Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15789contigEcto-sp13_S_contig15789:5..874 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size872
Hectar predicted targeting categoryother localisation
Exons1
Cds size870
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462834.623268-CDS-Ecto-sp13_S_contig15789:4..8741681462834.623268-CDS-Ecto-sp13_S_contig15789:4..874Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15789 5..874 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15789.4260.1prot_Ecto-sp13_S_contig15789.4260.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig15789 5..874 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig15789.4260.1

>prot_Ecto-sp13_S_contig15789.4260.1 ID=prot_Ecto-sp13_S_contig15789.4260.1|Name=mRNA_Ecto-sp13_S_contig15789.4260.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=290bp
QPSRRQTAEICAVDGGNVVQSRRQAAEPRRDCRRGSRVDTHLLCAGRESR
WNEGRQPERRACKIDASLRVRWNNGWHGRQEESVRQRHRHVYFGRRRRCP
TVPDPSNIHRDAAKQGVMVDVRRFRLAAEVDGQPSTYLTGTDLIRAWEQQ
DDGKTAVRREAIDGPYEMYTAAEVADKVHEDERANEAPAEQDARRYFAEG
FVVPKPPPEGGRRRRKQALDDGNFSVKCDRWSPEGTPDDPKFNIRKSEFV
HNVENHPAAMLPLVQYIDGFNANGMQTKASSWKRCKCMW*
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mRNA from alignment at Ecto-sp13_S_contig15789:5..874+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig15789.4260.1 ID=mRNA_Ecto-sp13_S_contig15789.4260.1|Name=mRNA_Ecto-sp13_S_contig15789.4260.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=870bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15789:5..874+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAACCTAGTCGTCGACAGACTGCTGAGATCTGCGCCGTCGATGGAGGAAA
TGTTGTCCAATCAAGGAGGCAAGCAGCTGAGCCGCGACGAGACTGCCGCC
GCGGGTCTCGCGTCGACACACATCTTCTCTGTGCCGGAAGAGAAAGCCGA
TGGAACGAAGGGCGACAACCAGAACGGCGAGCTTGCAAGATCGACGCCTC
ACTTCGGGTTCGATGGAATAATGGTTGGCATGGACGGCAAGAGGAAAGTG
TACGTCAACGACATCGTCATGTGTACTTTGGACGGCGTCGACGATGCCCA
ACCGTGCCGGATCCTAGCAATATACATCGGGACGCAGCAAAGCAAGGAGT
GATGGTGGACGTGCGACGCTTCCGACTGGCAGCCGAGGTTGATGGCCAAC
CTTCCACCTACCTGACCGGCACGGACCTTATCCGAGCGTGGGAGCAGCAG
GATGACGGCAAAACAGCGGTGCGGCGTGAGGCGATCGATGGCCCTTACGA
GATGTACACAGCGGCCGAAGTTGCGGACAAAGTCCATGAAGATGAGCGTG
CGAACGAGGCACCTGCGGAGCAGGACGCGAGACGATATTTTGCGGAGGGG
TTTGTCGTCCCTAAGCCGCCACCAGAGGGAGGTCGACGGCGTCGTAAACA
GGCCCTGGACGACGGTAACTTTTCTGTCAAATGCGACCGTTGGAGTCCCG
AGGGGACGCCGGACGACCCTAAGTTCAACATCCGGAAGTCCGAGTTCGTG
CACAACGTGGAAAACCATCCAGCCGCTATGCTACCCCTCGTCCAGTACAT
CGACGGCTTCAACGCCAATGGAATGCAGACTAAGGCGAGCTCTTGGAAGC
GCTGCAAATGCATGTGGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15789:5..874+

>mRNA_Ecto-sp13_S_contig15789.4260.1 ID=mRNA_Ecto-sp13_S_contig15789.4260.1|Name=mRNA_Ecto-sp13_S_contig15789.4260.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=870bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15789:5..874+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAACCTAGTCGTCGACAGACTGCTGAGATCTGCGCCGTCGATGGAGGAAA
TGTTGTCCAATCAAGGAGGCAAGCAGCTGAGCCGCGACGAGACTGCCGCC
GCGGGTCTCGCGTCGACACACATCTTCTCTGTGCCGGAAGAGAAAGCCGA
TGGAACGAAGGGCGACAACCAGAACGGCGAGCTTGCAAGATCGACGCCTC
ACTTCGGGTTCGATGGAATAATGGTTGGCATGGACGGCAAGAGGAAAGTG
TACGTCAACGACATCGTCATGTGTACTTTGGACGGCGTCGACGATGCCCA
ACCGTGCCGGATCCTAGCAATATACATCGGGACGCAGCAAAGCAAGGAGT
GATGGTGGACGTGCGACGCTTCCGACTGGCAGCCGAGGTTGATGGCCAAC
CTTCCACCTACCTGACCGGCACGGACCTTATCCGAGCGTGGGAGCAGCAG
GATGACGGCAAAACAGCGGTGCGGCGTGAGGCGATCGATGGCCCTTACGA
GATGTACACAGCGGCCGAAGTTGCGGACAAAGTCCATGAAGATGAGCGTG
CGAACGAGGCACCTGCGGAGCAGGACGCGAGACGATATTTTGCGGAGGGG
TTTGTCGTCCCTAAGCCGCCACCAGAGGGAGGTCGACGGCGTCGTAAACA
GGCCCTGGACGACGGTAACTTTTCTGTCAAATGCGACCGTTGGAGTCCCG
AGGGGACGCCGGACGACCCTAAGTTCAACATCCGGAAGTCCGAGTTCGTG
CACAACGTGGAAAACCATCCAGCCGCTATGCTACCCCTCGTCCAGTACAT
CGACGGCTTCAACGCCAATGGAATGCAGACTAAGGCGAGCTCTTGGAAGC
GCTGCAAATGCATGTGGTGA
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