mRNA_Ecto-sp13_S_contig15788.4259.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig15788.4259.1
Unique NamemRNA_Ecto-sp13_S_contig15788.4259.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig15788.4259.1 vs. uniprot
Match: A0A6H5KD72_9PHAE (Lipoxygenase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KD72_9PHAE)

HSP 1 Score: 49.3 bits (116), Expect = 2.000e-5
Identity = 23/26 (88.46%), Postives = 25/26 (96.15%), Query Frame = 1 
Query:    1 ELVTVGELKWLAELENSTYKKVFLAK 78
            ELVTVGE+KWLAELENST +KVFLAK
Sbjct:  430 ELVTVGEVKWLAELENSTDQKVFLAK 455
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15788.4259.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KD72_9PHAE2.000e-588.46Lipoxygenase domain-containing protein n=2 Tax=Ect... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15788contigEcto-sp13_S_contig15788:369..1019 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size157
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size153
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462834.4820826-CDS-Ecto-sp13_S_contig15788:370..4451681462834.4820826-CDS-Ecto-sp13_S_contig15788:370..445Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15788 371..445 -
1681462834.493035-CDS-Ecto-sp13_S_contig15788:941..10191681462834.493035-CDS-Ecto-sp13_S_contig15788:941..1019Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15788 942..1019 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15788.4259.1prot_Ecto-sp13_S_contig15788.4259.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig15788 371..1019 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig15788.4259.1

>prot_Ecto-sp13_S_contig15788.4259.1 ID=prot_Ecto-sp13_S_contig15788.4259.1|Name=mRNA_Ecto-sp13_S_contig15788.4259.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=51bp
ELVTVGELKWLAELENSTYKKVFLAKWKPCHASRDVGNEERCGSTGPQAD
N
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mRNA from alignment at Ecto-sp13_S_contig15788:369..1019-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig15788.4259.1 ID=mRNA_Ecto-sp13_S_contig15788.4259.1|Name=mRNA_Ecto-sp13_S_contig15788.4259.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=651bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15788:369..1019- (Ectocarpus species13 EcNAP12_S_4_19m)
GAGCTCGTTACCGTGGGAGAGCTGAAATGGCTTGCGGAATTGGAAAATTC
CACGTACAAGAAAGTCTTCCTCGCTAAGGTTAGTCTGGTACTGTTGGTGT
TCTGGTTGTTGACGTTCTTTTCACGTTCATTCAACAGCCCCACCTCACCT
TTGCCCAGATGTGATTCCTGGCAGTGTACACACGTCAACTACGACGACTC
GTCAGAGTGGTTCAGTCTTGCCACGCGGCTTGACTATGACGCTGAGTGCC
TCCGGAAGGCAAGTAACAAGTTGGGCCTAGGGTGGTTTGGGAGTTGTGCC
ACAAGTCACGGATATTTTCTTCCAGAAGGGGGCATCTAACTTGAGACGAA
TAATTGTACAAAACAGAGTTGAGCTATTTGCGGTGACGATGGTTACGCTC
ATTCTTTGTGTTTGTTTCCCACCACTGTCTTGCATTCATATTTGAATGTG
GTAAGTGCCCTCAAGTTCACACGAGCGGTTGGCTACTTGGCAGTGGTGGG
GTGGATTATTGTAGAATATGTTCGTGATGTTCCTGACGAGAAGCGATCGC
CTGGTGATTGCATGCCTTTTCAAGTGGAAACCGTGCCATGCTTCGAGGGA
CGTTGGCAACGAGGAGAGGTGTGGATCAACTGGGCCACAAGCGGATAATG
T
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15788:369..1019-

>mRNA_Ecto-sp13_S_contig15788.4259.1 ID=mRNA_Ecto-sp13_S_contig15788.4259.1|Name=mRNA_Ecto-sp13_S_contig15788.4259.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=153bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15788:369..1019- (Ectocarpus species13 EcNAP12_S_4_19m)
GAGCTCGTTACCGTGGGAGAGCTGAAATGGCTTGCGGAATTGGAAAATTC
CACGTACAAGAAAGTCTTCCTCGCTAAGTGGAAACCGTGCCATGCTTCGA
GGGACGTTGGCAACGAGGAGAGGTGTGGATCAACTGGGCCACAAGCGGAT
AAT
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