mRNA_Ecto-sp13_S_contig15720.4219.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig15720.4219.1 vs. uniprot
Match: A0A6H5KN83_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN83_9PHAE) HSP 1 Score: 486 bits (1251), Expect = 2.360e-171 Identity = 266/344 (77.33%), Postives = 273/344 (79.36%), Query Frame = 1
Query: 1 MSGVDYSKWDKMANEMSDSDDDNGNNPEVTTFDQPQSVTFGGTSASQAAEGWDGTSDDSGAHPETTPSSSGVVAPADGSTGAVAAAATGSAPRPKVKPPMSDERLTENGAAVRGDANGGRQALQYVWRQARAEVVVVVPVPAGTHAGDVEVSLRAKPETIAEGVADLIRVAVK-------------------------------GELAFQAKLGAEDEGEVEWELKDYP------------------------------ASSSSNGDRRGVEIVLRKHCPVPNAVVWWKSLLKGGPEIDVAAIKGRATNNHQSVWEEALGMFKERVAARKGQPKISVDMGEGDS 849
MSGVDYSKWDKMA+EMSDSDDDNGNNPEVTTFDQPQSVTFGGTSASQAAEGWDG SDDSGAHP+TTPSSSGV APADGSTGAVAAAATG+ P P+VKP +SDERLTENGAAVRGDAN GRQALQYVWRQ RAEVVVVVPVPAGT AGDVEVSLRAKPETIAEGVADLIRVAVK GELAFQAKLGAEDEGEVEWELKDYP ASSSSNGDRRGVEIVL+KHCPVPNA VWWKSLLKGGPEIDVAAIKGRATNNHQSVWEEALGMFKE+VAARKGQPKISVDM EGDS
Sbjct: 1 MSGVDYSKWDKMASEMSDSDDDNGNNPEVTTFDQPQSVTFGGTSASQAAEGWDGASDDSGAHPDTTPSSSGVAAPADGSTGAVAAAATGTTPTPQVKPLISDERLTENGAAVRGDANAGRQALQYVWRQTRAEVVVVVPVPAGTRAGDVEVSLRAKPETIAEGVADLIRVAVKATRGRDGAASRELGTAATAPGGGTKLVPVLEGELAFQAKLGAEDEGEVEWELKDYPGTAVARDDPDSSGDPVGSAPPPAPAAGAREASSSSNGDRRGVEIVLKKHCPVPNAAVWWKSLLKGGPEIDVAAIKGRATNNHQSVWEEALGMFKEQVAARKGQPKISVDMEEGDS 344
BLAST of mRNA_Ecto-sp13_S_contig15720.4219.1 vs. uniprot
Match: A0A836CJH1_9STRA (CS domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJH1_9STRA) HSP 1 Score: 132 bits (333), Expect = 2.170e-33 Identity = 105/308 (34.09%), Postives = 144/308 (46.75%), Query Frame = 1
Query: 10 VDYSKWDKMANEMSDSDDDNGNN-PEVTTFDQPQSVTFGGTSASQAAEGWDGTSDDSGAHPETTPSSSGVVAPADGSTGAVAAAATGSAPRPKVKPPMSDERLTENGAAVRGDANGGRQALQYVWRQARAEVVVVVPVPAGTHAGDVEVSLRAK---PETIAEG-VADLIRVAVKG------ELAFQAKLGAEDEGEVEWELKDY-----PA-------------SSSSNGDRRGVEIVLRKHCPVPNAVVWWKSLLKGGPEIDVAAIKGR---ATNNHQSVWEEALGMFKERVAARKGQPKISVDMG 837
VDYSKWDKMA +MSDS+D+ G + P VT FD P SVT+GG A + SS+G D A+ P LT NGAAV+ D A Y W Q+R +V + V P GT A +VEV + + P A+ + ++V+ KG +L + L +D V+W L+D PA SS R + + LRKH P+ A +WWK +KGGP ID+AAI+GR + Q VW+EA+ F+ RV K + + VD+G
Sbjct: 2 VDYSKWDKMAADMSDSEDEEGGSKPVVTAFDNPTSVTWGGGDAPEEERLXXXXXXXXXXXXXXXXSSAGTPGADDSKRAAL------------TDKPARLLTLTRNGAAVQDDCG----AYTYFWSQSRGDVAITVVAPPGTRASEVEVKVTSDASAPTLAAQAPLGHHLKVSAKGAILLEGDLTYPVALDPDDPESVDWVLQDLGLPARPAPESAVESDVSTADQSSERSPARAITVTLRKHSPIAGAALWWKGAVKGGPTIDMAAIEGRDAKGASASQKVWDEAMEGFRARVKQLKLE-RTEVDIG 292
BLAST of mRNA_Ecto-sp13_S_contig15720.4219.1 vs. uniprot
Match: X6NBK4_RETFI (CS domain-containing protein n=1 Tax=Reticulomyxa filosa TaxID=46433 RepID=X6NBK4_RETFI) HSP 1 Score: 93.2 bits (230), Expect = 2.350e-18 Identity = 87/299 (29.10%), Postives = 149/299 (49.83%), Query Frame = 1
Query: 1 MSGVDYSKWDKMANEMSDSDDDNGNN-PEVTTFDQPQSVTFGGTSASQAAEGWDGTSDDSGAHPETTPSSSGVVAPADGSTGAVAAAATGSAPRPK-------VKPPMSD--------ERLTENGAAVRGDANGGRQALQYVWRQARAEVVVVVP-VPAGTHAGDVEVSLRAKPETIAEGVADLIRVAVKGELAFQAKLGAEDEGEVEWELKDYPASSSSN--GDRRGVEIVLRKHCPVPNAVVWWKSLLKGGPEIDVAAIKGRATN--NHQSVWEEALGMFKERVAARKGQPK-ISVD 831
M+G++YSKW+K+A + SD+++ +N P VT D+P SVT G T T + S ++ ++T +++ V + + PR + VKP ++ + L+E A V NGG + +Y+W Q R EVV+ + +P T A +++ + T+ D I K EL++ E++ +EWE+K +P ++ + + I L+K N + WW ++ KG P IDVAAIK R T+ +++W+ A FKE+V ++ QP+ I +D
Sbjct: 1 MTGINYSKWNKIAEALDSSDEESASNTPHVTKLDRPSSVTIGPTGV---------TINPSPSNNQSTNANNKSVVKKTIENPTAKQSYNSTVPRQQKDQKATIVKPQNNEIIESKVKTKTLSELKAEVL-TVNGG-ETDEYMWSQTRDEVVLFIKNIPLSTKAKSIKIQYNEEKNTVFIQCLDKILYNNK-ELSYNIVKTKEEDCGLEWEIKTFPFCDTNGIASQMKLLTIYLKKKEFSANVITWWGNVFKGDPSIDVAAIKERKTDAKTMRNIWQSAHESFKEKV--KQFQPQTIEID 285
BLAST of mRNA_Ecto-sp13_S_contig15720.4219.1 vs. uniprot
Match: A0A7S0KK22_9CHLO (Hypothetical protein n=1 Tax=Ostreococcus mediterraneus TaxID=1486918 RepID=A0A7S0KK22_9CHLO) HSP 1 Score: 77.4 bits (189), Expect = 1.020e-12 Identity = 64/200 (32.00%), Postives = 94/200 (47.00%), Query Frame = 1
Query: 307 ERLTENGAAVRGDANGGRQALQYVWRQARAEVVVVVPVPAGTHAGDVEVSLRAKPETIA---EGVADLIRVAVKGELAFQAKLGAEDEGEVE-----------WELKDYPASSSSNGD--RRGVEIVLRKHCPVPNAVVWWKSLLKGGPEIDVAAIKGRAT---NNHQSVWEEALGMFKERVAARKGQPKISVDMGEGDS 849
+ ++ NG VR D +G A++Y WRQ E V V T A DV V + A+ I+ +G IR +GE A + DE E + WE+ D+ +GD RR V + +RK V WW+S +KGGPE+D + R+ + Q+ W +A MF+ER+A R+ I VD D+
Sbjct: 130 KEMSRNGGVVREDGDG---AVRYFWRQDAKEATASVVVAPKTKAKDVRVDVSAREVKISVMKDG--GEIREVFRGEWAHEIAEEPRDEDEDDIGCRAAPTFGDWEITDF----EGHGDDARRVVRVTVRKKSS-DMLVHWWRSCVKGGPEVDPMTFEDRSATKASQAQTTWAQAQAMFRERIANRE---MIEVDAHTSDA 316
BLAST of mRNA_Ecto-sp13_S_contig15720.4219.1 vs. uniprot
Match: L1JV05_GUITC (CS domain-containing protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1JV05_GUITC) HSP 1 Score: 74.7 bits (182), Expect = 5.430e-12 Identity = 62/194 (31.96%), Postives = 96/194 (49.48%), Query Frame = 1
Query: 280 PKVKPPMSDERLTENGAA---------VRGDANGGRQALQYVWRQARAEVVVVVPVPAGTHAGDVEVSLRAKPETIAEGVADLIRVAVKGELAFQAKLGAEDEGEVEWELKDYPASSSSNGDRRGVEIVLRKHCP-------VP---NAVVWWKSLLKGGPEIDVAAIKGRATNN---HQSVWEEALGMFKERV 795
P K P++++R + A+ R NGG QY+W Q R EVV+ +PAGT A D+ V L ++ +A+ +I + +L++ +E ++WELKD+ + RR + I LRK P +P + ++WWK + G EIDVA+I R N +QSVW+EA F+ V
Sbjct: 84 PVGKEPLTEQRSSGTSASREEEIASSLARMSRNGGT-CDQYIWSQDRHEVVINFFLPAGTRAKDMSVRLTSEKHLLAKNQEVVI---IDRDLSYPV---VNNEDSLDWELKDF------HDGRRLLRISLRKTLPGMTSLPALPVEESVILWWKCVFVGDAEIDVASIPDRKKKNLSTNQSVWKEAHEKFQHIV 264
BLAST of mRNA_Ecto-sp13_S_contig15720.4219.1 vs. uniprot
Match: A0A7S4UCT6_GUITH (Hypothetical protein n=1 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4UCT6_GUITH) HSP 1 Score: 73.9 bits (180), Expect = 1.870e-11 Identity = 80/280 (28.57%), Postives = 118/280 (42.14%), Query Frame = 1
Query: 7 GVDYSKWDKMANEMSDSDDDNGNNPEVTTFDQPQSVTFGGTSASQAAEGWDGTSDDSGAHPETTPSSSGVVAPADGSTGAVAAAATGSAPRPKVKPPMSDERLTENGAAVRGDANGGRQALQYVWRQARAEVVVVVPVPAGTHAGDVEVSLRAKPETIAEGVADLIRVAVKGELAFQAKLGAEDEGEVEWELKDYPASS-----SSNGDRRGVEIVLRKHCPVPNAVV-WWKSLLKGGPEIDVAAIKGRATNN---HQSVWEEALGMFKERVAARKGQPK 819
G+DYSKWD+ E+SDS+D E G++ S E G P T SSG A +E + + R NGG QY+W Q R EVV+ +PAGT A D+ V L ++ +A+ +I + +L++ +E ++WELKD+ S G+ + PV +V+ WWK + G EIDVA+I R N +QSVW+EA F+E + R +P+
Sbjct: 93 GLDYSKWDRFTEEVSDSED------EDMXXXXXXXXXXRGSNISMPVEXXXXXXQPVGKEPLTEQRSSGTSA-------------------------SREEEIASS--LARMSRNGGT-CDQYIWSQDRHEVVINFFLPAGTRAKDMSVRLTSEKHLLAKNQEVVI---IDRDLSYPV---VNNEDSLDWELKDFHDGRRLLRISLRKTLPGMTSL--PALPVEESVILWWKCVFVGDAEIDVASIPDRKKKNLSTNQSVWKEAHEKFQEMI--RNSEPR 328
BLAST of mRNA_Ecto-sp13_S_contig15720.4219.1 vs. uniprot
Match: A0A2P4YYV1_9CRYT (CS domain protein n=4 Tax=Cryptosporidium TaxID=5806 RepID=A0A2P4YYV1_9CRYT) HSP 1 Score: 65.1 bits (157), Expect = 9.980e-9 Identity = 62/279 (22.22%), Postives = 114/279 (40.86%), Query Frame = 1
Query: 1 MSGVDYSKWDKMANEMSDSDDDNGNNPEVTTFDQPQSVTFGGTSASQAAEGWDGTSDDSGAHPETTPSSSGVVAPADGSTGAVAAAATGSAPRPKVKPPMSDERLTENGAAVRGDANGGRQALQYVWRQARAEVVVVVPVPAGTHAGDVEVSLRAKPETIAEGVADLIRVAVKGELAFQAKLGAEDEGEVEWELKDYPASSSSNGDR---RGVEIVLRKHCPVPNAVVWWKSLLKGGPEIDVAAIKGRATNNHQS-------VWEEALGMFKERVAARK 807
MSG+DYSKWDK+ + + + + VT FD P S+TFGG S+ +D+ + + + P G R K+ L+ N G + G+ Y W Q ++ +V+ + + D +V++ TI G+ ++ + E+ + D+ + W +KD + R + + + L K + +WWK + KGG E D++ ++N + VWE+A F+ ++ R+
Sbjct: 1 MSGIDYSKWDKIEISSDEESEKSVSRCNVTRFDSPHSITFGGHIESE---------EDNKVNSDVKVEEFKKIEP-------------GHVSREKI--------LSLNDYVFGGKSKNGKN---YYWTQTENDLTIVIEISPEMQSKDFKVNVTESDITIMYGLETILLEKFEYEVKY-------DDNTIFWSIKDVESFDKVQNKRIINKMLVLELEKKELNNSIRIWWKRIFKGGIETDISKFNRFTSSNKEERNKKFLQVWEKAHDEFRNKIKNRQ 239
BLAST of mRNA_Ecto-sp13_S_contig15720.4219.1 vs. uniprot
Match: A0A8K0DRG7_9ROSA (Uncharacterized protein n=1 Tax=Rhamnella rubrinervis TaxID=2594499 RepID=A0A8K0DRG7_9ROSA) HSP 1 Score: 62.8 bits (151), Expect = 1.030e-7 Identity = 49/147 (33.33%), Postives = 73/147 (49.66%), Query Frame = 1
Query: 289 KPPMSDERLTENGAAVRGDANGGRQALQYVWRQARAEVVVVVPVPAGTHAGDVEVSLRAKPETIAEGVADLIRVAVKGELAFQAKLGAEDEGEVEWELKDYPASSSSNGDRRGVEIVLRKHCPVPNAVVWWKSLLKGGPEIDVAAIK 729
K P+ E+ E+GA V NG +Y W Q EV VV+PVPAGT + +E ++ + ++V +KG+ EGE+ +K S S D++ V I+L KH + + WWKSL+KG PEID ++
Sbjct: 115 KAPVEVEKKEESGARVPNLGNG-LDLEKYSWTQTLQEVTVVIPVPAGTKSRFIECEIKK----------NRLKVGLKGQPPII-------EGELFRSIKP-DDSYWSLEDQKAVSILLTKH----DQMEWWKSLVKGDPEIDTQKVE 238
BLAST of mRNA_Ecto-sp13_S_contig15720.4219.1 vs. uniprot
Match: UPI001263A0BC (protein BOBBER 1 n=2 Tax=Anacardiaceae TaxID=4011 RepID=UPI001263A0BC) HSP 1 Score: 58.5 bits (140), Expect = 2.820e-6 Identity = 42/149 (28.19%), Postives = 67/149 (44.97%), Query Frame = 1
Query: 283 KVKPPMSDERLTENGAAVRGDANGGRQALQYVWRQARAEVVVVVPVPAGTHAGDVEVSLRAKPETIAEGVADLIRVAVKGELAFQAKLGAEDEGEVEWELKDYPASSSSNGDRRGVEIVLRKHCPVPNAVVWWKSLLKGGPEIDVAAIK 729
K PP +R ++ A+ + G Y W Q E+ +++PVP GT + V + E + ++V +KG+ +GE+ +K S D+ + I+L K N + WWKSLLKGGPEID ++
Sbjct: 113 KKAPPQEPQRDSDGNPAIVPNKGNGLDLDNYSWTQTLQELTIIIPVPNGTKSRSV----------VCEIKKNHLKVGLKGQPPII-------DGELSQSIKPDDCYWSIE-DQNSISILLTKQ----NQMEWWKSLLKGGPEIDTQKVE 239
BLAST of mRNA_Ecto-sp13_S_contig15720.4219.1 vs. uniprot
Match: I6YM86_LINUS (NADH:ubiquinone reductase (non-electrogenic) n=1 Tax=Linum usitatissimum TaxID=4006 RepID=I6YM86_LINUS) HSP 1 Score: 58.9 bits (141), Expect = 3.580e-6 Identity = 43/151 (28.48%), Postives = 72/151 (47.68%), Query Frame = 1
Query: 277 RPKVKPPMSDERLTENGAAVRGDANGGRQALQYVWRQARAEVVVVVPVPAGTHAGDVEVSLRAKPETIAEGVADLIRVAVKGELAFQAKLGAEDEGEVEWELKDYPASSSSNGDRRGVEIVLRKHCPVPNAVVWWKSLLKGGPEIDVAAIK 729
+P+ + P+ ++ + ++ +A G Y W Q EV + +PVP GT + + ++ K + + I ++GEL K+G E W L+D +R V I+L K + + WWKSL+KGGPEIDV ++
Sbjct: 12 QPQHQQPIESKKEKKASSSPVPNAGNGLDLGNYSWGQTLQEVTITIPVPQGTRSKQITCEIKKKSLKLEIKGSPTI---IEGELYGSVKVG-----ESFWNLED----------QRIVSILLTK---LDDKTNWWKSLMKGGPEIDVQKVE 141 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15720.4219.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 15
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig15720.4219.1 >prot_Ecto-sp13_S_contig15720.4219.1 ID=prot_Ecto-sp13_S_contig15720.4219.1|Name=mRNA_Ecto-sp13_S_contig15720.4219.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=284bp MSGVDYSKWDKMANEMSDSDDDNGNNPEVTTFDQPQSVTFGGTSASQAAEback to top mRNA from alignment at Ecto-sp13_S_contig15720:50..1078+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig15720.4219.1 ID=mRNA_Ecto-sp13_S_contig15720.4219.1|Name=mRNA_Ecto-sp13_S_contig15720.4219.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1029bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15720:50..1078+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15720:50..1078+ >mRNA_Ecto-sp13_S_contig15720.4219.1 ID=mRNA_Ecto-sp13_S_contig15720.4219.1|Name=mRNA_Ecto-sp13_S_contig15720.4219.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=852bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15720:50..1078+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |