mRNA_Ecto-sp13_S_contig1569.4203.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1569.4203.1
Unique NamemRNA_Ecto-sp13_S_contig1569.4203.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1569.4203.1 vs. uniprot
Match: A0A6H5L7D3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7D3_9PHAE)

HSP 1 Score: 660 bits (1704), Expect = 1.130e-236
Identity = 369/433 (85.22%), Postives = 381/433 (87.99%), Query Frame = 1 
Query:    1 MLRCAASSPAAERVGGAARRCGTKFASHGRLLHVKQRHHRRTSGLTALLLDRDAAHVAAIARAAPVSNGFCTAKLRLPHAQGVTGCGGRSSAPVLFNRKTTAAGPMLIHRPPPWNAATTGARRQLSTPGRGGRALPERVFAGLVVVVLAAWGLVFGAITLLLLPFVGIGLFLLRRNFQRGGMSRNLVTRLAQKMAERGGPHGXXXXXXXXXXXXXXX--------------------APWMQRAATEGALSSLFAQMLGGGVRGMQLVGVLRSEVEKRALRHPGLSSALGGGIENFSDVEISTVDSVGGNSWNSGGGAGDRQGGKPSRVTKAKLRFSGRRAGAGWAEVEVTECGGREEEGMEFDRIFVTLDNGRTFDLTSDIFSGDDRVGEGASGVRSRRTVKGRSTSPQGSKNKARREARGGQPVEAEFRDK 1239
            MLRCAA SPAAERV GAARRCGTK ASHGRL++V+QRHHRR+SGLTALLLDRDAAHVAA+AR  PVSNGFCTAK RLPHAQGVTGCGGRSSAPVLFNR TTAA PM I  P PWNA T GARRQLST GRGGR LPERVFAGLVVVVLAAWGLVFGAITLLLLPFVGIGLFLLRRNFQRGGMSRNL  RLAQKMAERGGPHG     XXXXXXXXXX                    APWMQRA TEGA+SSLFA+MLGGG+RGMQLVGVLRSEVEKRALRHPGLSSALGGGIENFSD+EISTVDSVGG+SWNSGGGAGDRQGG PSRVT AKLRFSGRRAGAGWAEVEVTE GGREEEG+EFDRIFVTLDNGRTFDLTSD FSGDDRVGEGASGVRSRRTV GRSTSPQGSKN AR EA GGQP+EAEFRDK
Sbjct:    1 MLRCAAFSPAAERVRGAARRCGTKVASHGRLINVQQRHHRRSSGLTALLLDRDAAHVAAVARVTPVSNGFCTAKRRLPHAQGVTGCGGRSSAPVLFNRTTTAAHPMSIQGPRPWNATTAGARRQLSTSGRGGRPLPERVFAGLVVVVLAAWGLVFGAITLLLLPFVGIGLFLLRRNFQRGGMSRNLAARLAQKMAERGGPHGGGGGLXXXXXXXXXXXXXXXGGXXXXXXXXXXXXXAPWMQRAPTEGAVSSLFARMLGGGLRGMQLVGVLRSEVEKRALRHPGLSSALGGGIENFSDIEISTVDSVGGSSWNSGGGAGDRQGGGPSRVTNAKLRFSGRRAGAGWAEVEVTEWGGREEEGIEFDRIFVTLDNGRTFDLTSDSFSGDDRVGEGASGVRSRRTVSGRSTSPQGSKNNARGEAGGGQPIEAEFRDK 433
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BLAST of mRNA_Ecto-sp13_S_contig1569.4203.1 vs. uniprot
Match: D7FYD6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYD6_ECTSI)

HSP 1 Score: 471 bits (1211), Expect = 1.320e-163
Identity = 270/311 (86.82%), Postives = 278/311 (89.39%), Query Frame = 1 
Query:  316 MLIHRPPPWNAATTGARRQLSTPGRGGRALPERVFAGLVVVVLAAWGLVFGAITLLLLPFVGIGLFLLRRNFQRGGMSRNLVTRLAQKMAERGGPHGXXXXXXXXXXXXXXXA---PWMQRAATEGALSSLFAQMLGGGVRGMQLVGVLRSEVEKRALRHPGLSSALGGGIENFSDVEISTVDSVGGNSWNSGGGAGDRQGGKPSRVTKAKLRFSGRRAGAGWAEVEVTECGGREEEGMEFDRIFVTLDNGRTFDLTSDIFSGDDRVGEGASGVRSRRTVKGRSTSPQGSKNKARREARGGQPVEAEFRDK 1239
            M I    P +A T GARRQLST GRGGR LPER+FAGLVVVVLAAWGLVFGAITLLLLPFVGIGLFLLRRNFQRGGMSRNLV RLAQKMAERGG HGXXXXXXXXXX         P MQR+ TEGALSSLFA+MLGGG+RGMQLVGVLRSEVEKRALRHPGLSSALGGGIENFSD+EISTV SVGGNSWNSGGG GDR+GG+PSRV KAKLRFSGRRAGAGWAEVEVTE  GREEE MEFDRIFVTLDNGRTFDLTSD FSGDDRVGEGASGVRSRRTVKGRSTSPQGSK KAR EA GGQPVEAEFRDK
Sbjct:    1 MSIPSTSPCSATTAGARRQLSTAGRGGRRLPERIFAGLVVVVLAAWGLVFGAITLLLLPFVGIGLFLLRRNFQRGGMSRNLVARLAQKMAERGGSHGXXXXXXXXXXPMMGGGGGTPRMQRSPTEGALSSLFARMLGGGIRGMQLVGVLRSEVEKRALRHPGLSSALGGGIENFSDIEISTVASVGGNSWNSGGGGGDRRGGEPSRVVKAKLRFSGRRAGAGWAEVEVTEWAGREEEEMEFDRIFVTLDNGRTFDLTSDSFSGDDRVGEGASGVRSRRTVKGRSTSPQGSKKKARGEAGGGQPVEAEFRDK 311
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1569.4203.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L7D3_9PHAE1.130e-23685.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FYD6_ECTSI1.320e-16386.82Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1569contigEcto-sp13_S_contig1569:453..4351 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1242
Hectar predicted targeting categorymitochondrion
Exons4
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-08_003630.1
Cds size1242
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462830.1042519-CDS-Ecto-sp13_S_contig1569:452..9211681462830.1042519-CDS-Ecto-sp13_S_contig1569:452..921Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1569 453..921 +
1681462830.1175108-CDS-Ecto-sp13_S_contig1569:1914..22031681462830.1175108-CDS-Ecto-sp13_S_contig1569:1914..2203Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1569 1915..2203 +
1681462830.1286027-CDS-Ecto-sp13_S_contig1569:3421..37051681462830.1286027-CDS-Ecto-sp13_S_contig1569:3421..3705Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1569 3422..3705 +
1681462830.136572-CDS-Ecto-sp13_S_contig1569:4151..43511681462830.136572-CDS-Ecto-sp13_S_contig1569:4151..4351Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1569 4152..4351 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1569.4203.1prot_Ecto-sp13_S_contig1569.4203.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1569 453..4351 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1569.4203.1

>prot_Ecto-sp13_S_contig1569.4203.1 ID=prot_Ecto-sp13_S_contig1569.4203.1|Name=mRNA_Ecto-sp13_S_contig1569.4203.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=414bp
MLRCAASSPAAERVGGAARRCGTKFASHGRLLHVKQRHHRRTSGLTALLL
DRDAAHVAAIARAAPVSNGFCTAKLRLPHAQGVTGCGGRSSAPVLFNRKT
TAAGPMLIHRPPPWNAATTGARRQLSTPGRGGRALPERVFAGLVVVVLAA
WGLVFGAITLLLLPFVGIGLFLLRRNFQRGGMSRNLVTRLAQKMAERGGP
HGGGGGLGGPMMGGGGGAPWMQRAATEGALSSLFAQMLGGGVRGMQLVGV
LRSEVEKRALRHPGLSSALGGGIENFSDVEISTVDSVGGNSWNSGGGAGD
RQGGKPSRVTKAKLRFSGRRAGAGWAEVEVTECGGREEEGMEFDRIFVTL
DNGRTFDLTSDIFSGDDRVGEGASGVRSRRTVKGRSTSPQGSKNKARREA
RGGQPVEAEFRDK*
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mRNA from alignment at Ecto-sp13_S_contig1569:453..4351+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1569.4203.1 ID=mRNA_Ecto-sp13_S_contig1569.4203.1|Name=mRNA_Ecto-sp13_S_contig1569.4203.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3899bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1569:453..4351+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTTGCGTTGTGCAGCGTCCTCTCCTGCCGCCGAGCGAGTAGGCGGAGC
CGCACGGAGATGCGGCACCAAGTTCGCCTCCCACGGACGACTACTACATG
TGAAGCAACGACATCATCGTCGTACCTCTGGCCTGACCGCCTTGCTGCTC
GACCGAGATGCTGCTCATGTCGCCGCCATCGCGAGAGCAGCCCCCGTCAG
CAACGGTTTCTGCACGGCGAAGCTAAGACTACCCCACGCGCAGGGCGTAA
CCGGATGCGGTGGCCGCAGCTCTGCCCCTGTCCTCTTCAACCGCAAAACA
ACAGCAGCGGGTCCCATGTTGATCCATAGGCCACCGCCGTGGAATGCAGC
AACAACAGGCGCACGCCGCCAGCTTAGCACACCAGGGCGAGGAGGACGCG
CTCTCCCGGAGAGGGTCTTCGCCGGCTTGGTGGTGGTTGTTCTTGCTGCT
TGGGGATTAGTTTTTGGCGGTGAGTCGAAGCAGAACACCGCCGTCCACGA
CACATCCCAATGAACTCCAAGTTGCCAACACTGCAAGCGACTCGCCAGTT
ACAAGAGGGTACAGCGGTAAGAATGCGGACTACAGCAGCGCGAAAGAGCG
GTTGAAATCCAGCGACGACGCACATGTGTATCGCAGACAAGTAAAGTGAC
CCACTTTTGTACAACACTCCAATTGTATTGCCTACCACATGCCGTAGCTG
GCATCAGATATCACCCCCGTTTGGACCGATGTCCAAAGCTTTGTTTTTGT
TCTTGGTTTTTGTCTGCACAAAGAGTGGCAGCCCCGAAAACGGCGGCGTT
GAGACGCTGCCTCGTCGAGAGCTTTCCGAAAACGTATGGTTTCGTTCTTG
CGTCCTCGTCGACGTGGAGTAGTCGAGCTTTGAAAATCGGTTATGGCGGT
GTGATGTCTCGCGTCACCTACCGTATGCGATACTGCTGTACATGTTGTAG
CACGCACTACTAGGGCGGTGTGTGTACGTGTCCGCAGGGAAGCAGACGAG
TAGCTGATACTTGGCACTTACTCCAGACACACAGCGACATGCCACTTAGC
GTGGTGAGGGGGCGTGAGGAAACCAACACAAACGTTGGACCCGTGGGAAG
TTTTGTTGCCAGCTTGCTAGTGCGGGGGGGTTCAGGGCTCCCGGCCTTTG
GGCAGCAAGCAGTATGTACCTGTGCGTGAGACCGGAATGAAGACGAAAGG
GATACAAAGACCCCCTGAAGATACCGTAATTTGGCAGAGTGAAGCATTTG
GATTTTCCCAAGTGGCGCGGCCGTACATTGGGATACGGAGTTGTCCAAGG
CTTGATTGCGAGCCCTGAATACACAGAAGAAGCTATTTACCGCACGCTTT
TCCCCGTTTCTGGCGCCTATCCCTCCCCATCAACACAGCAGTCCCCACCG
TAACCCCGCTCCCCTTCCCACCGCCTCCACTCCTTTTACGGCATTCCCTA
CGCTTGCCAAAGCGATCACGCTACTCCTCCTACCTTTCGTCGGCATCGGC
CTGTTTCTTTTGCGGCGTAATTTCCAACGCGGCGGAATGTCGAGGAATCT
CGTCACCCGATTGGCCCAAAAGATGGCGGAACGAGGGGGTCCTCACGGCG
GGGGTGGCGGTTTGGGGGGGCCGATGATGGGAGGAGGTGGTGGCGCCCCG
TGGATGCAGAGAGCTGCAACCGAGGGGGCGCTGTCCTCTCTCTTTGCGCA
GATGCTGGGGGGCGGAGTCCGCGGCATGCAGCTGGTGGGAGTCCTTCGCA
GGTGCGTGCGTGAAGACATCGGGTGCGCGCACGTGCCCGCCTGCCATTTT
TGTTACTTGGCATCGACCGCGCTACCCCCGGCTGACCATTGCAAAGGCGT
CATTCAGTCTCAGTGCGGTCGAAGACTTGAAGGGATGTTTCTGAAGGCCG
TGGTCGATCTGTGCGTCTGTCGGTGGTGGCCCCGGGCGCGATCCCTCGCG
GTTCCCCTTCGGATGCGTTCGCGGGGCAACACGCCTCCGTAAATTGTCCC
GTCTCGGCTTGAATCACCCCCTTGCTGTATGCACCCTTTTGATGAATGGC
CGCGCTTGCTGCGGTATCCCCCCCCCCGTCGAGAGAGCAATGGTCGTCCT
TTTGGTCTGGTTGGGGGGTTGGGTGGGTGTAGCTGTGTTTCGGTGACTCT
CTGAGTCCGTGCGGTCCACTTGACGTGTCTGTTTACGGACGGGTGTTGGG
GGGAAAAGGAAGGAGCTTTTGGATTGTCTTGAGGACTCTATCGTGCGTAC
GCGCGTGTGCCACGTTGGAGTTGGCCACGCTGCGCCGGGTTGGGTTGTCT
GACGGCGTGCTGACGACAAACAAGCTGTTCGCGGTCGTTTCCCGGCGTCC
GTGCATGCTTCGAGATTGTGGGGCACGGTTTACGGTTCGTCGGCCAGTCG
ACCAACTACTGTTGTGAACCTTGCACGCAGCACGAGAGAGTCGGAGAGCT
TGTTTCGCGTGTAGGCGGCTATACTTTGCGGTCCTCTGCTGTTGATGGTA
TTTGGGGCTCGTGTGTTGCTCCAGCCTTGCTGTGCACGGAAACGTTTTGT
GCTCTTTCTGCCACGAAGCTCGCACGTGACGTGTGGAGTGTCCTGCGTAC
TTGGCCAACATGAACCGGTGCCCCCGTTCCGAGTTTATTTGTTTTGCTAC
GGTTCATGTGCTATGCTTTGGCTGTTTTTTTTTTTTCTTTGCCATTGCAA
TCGGAGAGACTACCGTCCCCCCTTTGCTACAACTAGCCACGTGTACCCCT
AGGCGAAAGCTGTATCTGCCGCTGTTGCTGTTGCTGTTGCTGCTGCCGCT
GCTGCCGCCGGTTCACCCACCTCTCCCCTCACAAAAAACACACCCTGTGC
GCACCCGCTGCTTCTTTCCCCCTACTCCGTCGCTCCGTGCTTGTCCTCCC
GCTGCCGCTGGTTGCTGCTGCTCACGCGCCTCGAATCCCCCCCCCACCTA
TCACGACCAACAAATTCAGCGAGGTCGAGAAACGAGCGCTGCGGCACCCG
GGCCTCTCAAGTGCCCTCGGGGGCGGCATCGAGAACTTCTCCGACGTTGA
GATCTCCACCGTAGACTCTGTTGGCGGCAACTCTTGGAACTCCGGAGGAG
GCGCCGGCGACAGGCAGGGGGGGAAGCCTTCGAGGGTGACTAAGGCGAAG
CTAAGGTTTTCGGGCAGGAGGGCTGGCGCCGGGTGGGCGGAGGTGGAAGT
GACAGAGTGTGGGGGGCGGGAGGAAGAGGGGATGGAGTTCGACCGTATTT
TTGGTGCGTGGTTAAAGCCATGGGTAACACTCTGTGCGCTCGCATTTTGT
GGGAAGATTGCAAGAGGACGTGCGTTGTCCTCAATATTGTTTTTTGTTCG
CTGTCGCTCGAAACTCTGTGTTCCATGTTCCAAGCACTTCGTGTAGAGGG
ATGTAGAGGGGTGATGGGTTGGCGTTCCTGGCCGTGGATGGGCGTGTTAG
CACGGGAGATACGGGTTTAGCGAAAAGGAAGTTCGACCGGCTTTCCAATT
CCGCGATAGATGTACTGCCCTATCTTCATGGCGGTTTCGCCTCAAGAAAT
AACGTGTTTCGTGCAGGCTTCGCTGCTGATTTTCAGCAGGCGATGCCCGC
AATTTTTTTCCCAGCTCTAAAATATGGCCGACTTTCCTTCCCCCCATTCC
TGACATACCGCTGCCGCTGCCCCCAAAATGACGACATAACTACCCGTAGT
GACGCTGGACAACGGGCGGACGTTTGATCTAACGAGCGACATTTTTTCCG
GTGACGATCGGGTAGGAGAAGGGGCCAGCGGCGTTCGCTCCAGGAGAACG
GTCAAGGGTAGGTCGACTTCGCCGCAAGGATCGAAGAATAAAGCGAGAAG
GGAAGCCAGGGGGGGGCAGCCCGTGGAGGCGGAGTTCCGTGACAAGTAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1569:453..4351+

>mRNA_Ecto-sp13_S_contig1569.4203.1 ID=mRNA_Ecto-sp13_S_contig1569.4203.1|Name=mRNA_Ecto-sp13_S_contig1569.4203.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1242bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1569:453..4351+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTTGCGTTGTGCAGCGTCCTCTCCTGCCGCCGAGCGAGTAGGCGGAGC
CGCACGGAGATGCGGCACCAAGTTCGCCTCCCACGGACGACTACTACATG
TGAAGCAACGACATCATCGTCGTACCTCTGGCCTGACCGCCTTGCTGCTC
GACCGAGATGCTGCTCATGTCGCCGCCATCGCGAGAGCAGCCCCCGTCAG
CAACGGTTTCTGCACGGCGAAGCTAAGACTACCCCACGCGCAGGGCGTAA
CCGGATGCGGTGGCCGCAGCTCTGCCCCTGTCCTCTTCAACCGCAAAACA
ACAGCAGCGGGTCCCATGTTGATCCATAGGCCACCGCCGTGGAATGCAGC
AACAACAGGCGCACGCCGCCAGCTTAGCACACCAGGGCGAGGAGGACGCG
CTCTCCCGGAGAGGGTCTTCGCCGGCTTGGTGGTGGTTGTTCTTGCTGCT
TGGGGATTAGTTTTTGGCGCGATCACGCTACTCCTCCTACCTTTCGTCGG
CATCGGCCTGTTTCTTTTGCGGCGTAATTTCCAACGCGGCGGAATGTCGA
GGAATCTCGTCACCCGATTGGCCCAAAAGATGGCGGAACGAGGGGGTCCT
CACGGCGGGGGTGGCGGTTTGGGGGGGCCGATGATGGGAGGAGGTGGTGG
CGCCCCGTGGATGCAGAGAGCTGCAACCGAGGGGGCGCTGTCCTCTCTCT
TTGCGCAGATGCTGGGGGGCGGAGTCCGCGGCATGCAGCTGGTGGGAGTC
CTTCGCAGCGAGGTCGAGAAACGAGCGCTGCGGCACCCGGGCCTCTCAAG
TGCCCTCGGGGGCGGCATCGAGAACTTCTCCGACGTTGAGATCTCCACCG
TAGACTCTGTTGGCGGCAACTCTTGGAACTCCGGAGGAGGCGCCGGCGAC
AGGCAGGGGGGGAAGCCTTCGAGGGTGACTAAGGCGAAGCTAAGGTTTTC
GGGCAGGAGGGCTGGCGCCGGGTGGGCGGAGGTGGAAGTGACAGAGTGTG
GGGGGCGGGAGGAAGAGGGGATGGAGTTCGACCGTATTTTTGTGACGCTG
GACAACGGGCGGACGTTTGATCTAACGAGCGACATTTTTTCCGGTGACGA
TCGGGTAGGAGAAGGGGCCAGCGGCGTTCGCTCCAGGAGAACGGTCAAGG
GTAGGTCGACTTCGCCGCAAGGATCGAAGAATAAAGCGAGAAGGGAAGCC
AGGGGGGGGCAGCCCGTGGAGGCGGAGTTCCGTGACAAGTAG
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