mRNA_Ecto-sp13_S_contig15686.4202.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig15686.4202.1
Unique NamemRNA_Ecto-sp13_S_contig15686.4202.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig15686.4202.1 vs. uniprot
Match: D8LE89_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LE89_ECTSI)

HSP 1 Score: 516 bits (1330), Expect = 9.120e-181
Identity = 336/381 (88.19%), Postives = 344/381 (90.29%), Query Frame = 1 
Query:   19 RQRHLPQHAGGPPAAGHAGSPIESILNPDEANENRSPGGDQAPAPAQQPQPHQVQETGAA-RSWLQGPLRDCARNAGDDGALARSLLDAGAPTNFFDRTGRSPLHWACTRGNTAVVHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEFYGFAPIGLPPRNVPASLVAPALEAEELSWPMAAAIPHHNGVESIVDARNVYGSTALHRAAFNGREGVVLALLRGGADVCVVGNSGRRVQXXXXXXXXXXXXXXXXXXXXXXXXXXESAIAKDGSTPWSQLALAAETRPRGCPRVAKTALLLNTARGARAWARRGWLLMLRDKYSRGMFEADDIDLDGREGACSYVEDGQREDLARLVNQLVGIGEEGCFRLVVGFL 1158
            +QRHLPQH GGPPAAGHAGSPIESILNPD ANENRSP  DQA          QVQETGAA R+WLQ PLRDCARNA DDGALARSLLDAGAPTNFFD TGRSPLHWACTRGNTAVV  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEFYGFAPIGLPP NVPASLVAPALEAEELSWPMAA +P  NGVESIVDARNVYGSTALHRAAFNGREGVVLALLRGGADVCVVGNSGR   XXXXXXXXXXXXXXXXXXXXX     ESAIAKDGSTPWSQLALAAETRPRGCPRVAKTALLLNTARGARAWARRGWLLMLRDK++RG+FEA+ IDLDGR GACS +EDGQ ED ARLVNQLVGIGEEGCFRLVVGFL
Sbjct:   24 KQRHLPQHTGGPPAAGHAGSPIESILNPDAANENRSPDSDQAXXXXXXXXXXQVQETGAASRTWLQSPLRDCARNADDDGALARSLLDAGAPTNFFDSTGRSPLHWACTRGNTAVVLAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEFYGFAPIGLPPGNVPASLVAPALEAEELSWPMAAPMPQQNGVESIVDARNVYGSTALHRAAFNGREGVVLALLRGGADVCVVGNSGRXXXXXXXXXXXXXXXXXXXXXXXX-----ESAIAKDGSTPWSQLALAAETRPRGCPRVAKTALLLNTARGARAWARRGWLLMLRDKHNRGVFEAEAIDLDGRGGACSDMEDGQGEDFARLVNQLVGIGEEGCFRLVVGFL 399
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15686.4202.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LE89_ECTSI9.120e-18188.19Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15686contigEcto-sp13_S_contig15686:278..2517 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score522.7
Seed ortholog evalue1.5e-145
Seed eggNOG ortholog2880.D8LE89
Model size1161
Hectar predicted targeting categoryother localisation
Exons4
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
Ec32 ortholog descriptionAnkyrin repeat
Ec32 orthologEc-00_001340.1
Cds size1161
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462830.0387936-CDS-Ecto-sp13_S_contig15686:277..4391681462830.0387936-CDS-Ecto-sp13_S_contig15686:277..439Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15686 278..439 +
1681462830.050932-CDS-Ecto-sp13_S_contig15686:769..9161681462830.050932-CDS-Ecto-sp13_S_contig15686:769..916Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15686 770..916 +
1681462830.0638242-CDS-Ecto-sp13_S_contig15686:1268..17141681462830.0638242-CDS-Ecto-sp13_S_contig15686:1268..1714Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15686 1269..1714 +
1681462830.0790536-CDS-Ecto-sp13_S_contig15686:2111..25171681462830.0790536-CDS-Ecto-sp13_S_contig15686:2111..2517Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15686 2112..2517 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15686.4202.1prot_Ecto-sp13_S_contig15686.4202.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig15686 278..2517 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig15686.4202.1

>prot_Ecto-sp13_S_contig15686.4202.1 ID=prot_Ecto-sp13_S_contig15686.4202.1|Name=mRNA_Ecto-sp13_S_contig15686.4202.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=387bp
MLPFPCRQRHLPQHAGGPPAAGHAGSPIESILNPDEANENRSPGGDQAPA
PAQQPQPHQVQETGAARSWLQGPLRDCARNAGDDGALARSLLDAGAPTNF
FDRTGRSPLHWACTRGNTAVVHALLEAGADGFARDGSGKTPLHCAAQVGH
TTVVMVLLEFYGFAPIGLPPRNVPASLVAPALEAEELSWPMAAAIPHHNG
VESIVDARNVYGSTALHRAAFNGREGVVLALLRGGADVCVVGNSGRRVQA
CSALHLACQNAHAGCVQLLLAWGAQESAIAKDGSTPWSQLALAAETRPRG
CPRVAKTALLLNTARGARAWARRGWLLMLRDKYSRGMFEADDIDLDGREG
ACSYVEDGQREDLARLVNQLVGIGEEGCFRLVVGFL*
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mRNA from alignment at Ecto-sp13_S_contig15686:278..2517+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig15686.4202.1 ID=mRNA_Ecto-sp13_S_contig15686.4202.1|Name=mRNA_Ecto-sp13_S_contig15686.4202.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2240bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15686:278..2517+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCTGCCCTTCCCTTGCAGACAACGCCACCTACCTCAACATGCGGGGGG
ACCACCGGCTGCCGGGCATGCCGGGAGCCCCATCGAATCCATCCTCAACC
CGGACGAAGCTAATGAAAATCGATCACCCGGCGGTGACCAGGCGCCCGCT
CCAGCGCAGCAGGTGATTGGTCTATCCCCCGTACGCGTTTCACGAACGTT
ACCGGAGTTTTTGTCTGGAACTTCGTTGCTGTCGCCGTACGAAATGGGAC
TTGAACACGACGATTTTGACGTCTAAACTGTAGCTGTTCGAAGAGTGCTC
CATGCTCTCCTCTGGCACCCGGGCTCGTTGTATGTATCGAAGTACTTGTC
TGTTACCATCAGGGATAGAACTGCATAGCCGTTCCATACTTTGTACCTCC
GAAGGATTTTTTTTGCACGTGACGGGCATATTTTGACCCCGATAACATGT
GGTGCTTGTCTGATTGTGCCCCCCCCCCCCTCAACCCACCAGCCCCAACC
GCACCAGGTTCAGGAAACGGGTGCGGCGCGGAGTTGGTTACAAGGCCCTC
TCCGAGATTGTGCGCGAAACGCGGGCGACGACGGCGCGCTCGCCCGATCC
TTGCTCGACGCCGGTGCCCCCACCAACTTCTTCGATAGGGTGAGATGAAG
CATAAAGACCTTTGACTTCTTTTTTTTTTCTCGGGTATTTAGATTTCTTA
CGGGCCCACCTGCAATCACGAAAGGAGTCCGCATCTGTTGCGGATGTTGG
GAGGCACTGAGCAGGACCGGAGTTGTTACTTATTTTCAATTTGAAGAGGA
CAACAACAACAACAACAATTACAACAACCAGGCAGGAGTGTGCTGCACGT
TCAGCCAACTTGGCCATTTCATGCGTCCATGGCTTTCCGGTAACTACAGT
TTGTTTTCTTGGCGGGACAAAATCTCACAAGGCGCAGCATTTCAAGAACC
CCCTTCCCCCTCATTTGACTGAACTCCCCCTATATTCTCAGACGGGACGT
TCCCCTCTACACTGGGCATGCACCCGAGGGAACACAGCGGTCGTCCATGC
CCTCCTCGAAGCCGGTGCTGACGGCTTTGCTCGCGACGGGTCCGGGAAGA
CTCCCCTGCACTGCGCCGCTCAAGTCGGGCACACCACCGTCGTGATGGTG
CTGCTCGAGTTCTACGGGTTCGCACCCATCGGATTGCCGCCAAGGAATGT
GCCTGCGTCGTTAGTGGCACCGGCACTAGAAGCCGAGGAGTTGTCATGGC
CGATGGCGGCGGCGATACCGCACCATAACGGTGTCGAGTCCATAGTCGAC
GCCCGGAACGTTTACGGGAGCACGGCGCTGCACCGTGCGGCGTTCAACGG
CCGAGAGGGCGTCGTGCTGGCGCTGCTGAGGGGAGGGGCCGACGTCTGCG
TCGTTGGGAATAGCGGAAGGCGAGTGCAGGCTTGCTCGTTGGGGCTAGAA
TGCCTCCGAGTGTATGTATCTCTAACTTTGGGTTTGGGATGGACTCCTGG
CAACGGAGAACGGCTAGTAAAACGGACGTGCGTGTATGATAAGATGGACC
ACACGCTGGCGACGTGTGCCGTTTGCTTCCAGTAAAAGTTAATCCACAGA
AGAAAGAGCGCCCCAAACGAGTGCATCCAAGTCAAGCTTACAGCAGTGCT
CTGTTCACGATGCTGCCTTGCACACGAGACACGTACACGGCGTTCACCAG
AGATTCCTTTCTCTCGGGCGTTTATTTTCACGTCCCGTCCTTCTCGAGCA
AAGGCCCGCCACGACCACAAGCGTATCTCCCTAACAACGCCCGCCCCCCT
CTCCTCACTCGCATGATGTCGAAATCTTCAGGAGTGCGCTCCACCTCGCG
TGCCAGAACGCGCACGCCGGTTGCGTTCAGCTTCTGCTCGCCTGGGGCGC
CCAGGAGTCAGCCATCGCAAAGGATGGGTCCACCCCCTGGTCTCAGCTTG
CGCTGGCCGCGGAGACCCGCCCCCGCGGCTGCCCCCGCGTGGCCAAGACA
GCTTTGCTCCTCAACACGGCGCGAGGTGCTCGCGCTTGGGCTAGGCGGGG
CTGGCTGCTGATGCTGAGGGACAAGTACAGCCGGGGGATGTTCGAGGCAG
ACGACATCGATTTAGACGGTAGAGAAGGTGCTTGTAGTTACGTGGAGGAC
GGCCAAAGGGAGGATTTGGCGAGGTTGGTGAACCAACTTGTCGGGATTGG
CGAGGAAGGGTGCTTCCGATTGGTGGTGGGCTTCCTTTAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15686:278..2517+

>mRNA_Ecto-sp13_S_contig15686.4202.1 ID=mRNA_Ecto-sp13_S_contig15686.4202.1|Name=mRNA_Ecto-sp13_S_contig15686.4202.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1161bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15686:278..2517+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCTGCCCTTCCCTTGCAGACAACGCCACCTACCTCAACATGCGGGGGG
ACCACCGGCTGCCGGGCATGCCGGGAGCCCCATCGAATCCATCCTCAACC
CGGACGAAGCTAATGAAAATCGATCACCCGGCGGTGACCAGGCGCCCGCT
CCAGCGCAGCAGCCCCAACCGCACCAGGTTCAGGAAACGGGTGCGGCGCG
GAGTTGGTTACAAGGCCCTCTCCGAGATTGTGCGCGAAACGCGGGCGACG
ACGGCGCGCTCGCCCGATCCTTGCTCGACGCCGGTGCCCCCACCAACTTC
TTCGATAGGACGGGACGTTCCCCTCTACACTGGGCATGCACCCGAGGGAA
CACAGCGGTCGTCCATGCCCTCCTCGAAGCCGGTGCTGACGGCTTTGCTC
GCGACGGGTCCGGGAAGACTCCCCTGCACTGCGCCGCTCAAGTCGGGCAC
ACCACCGTCGTGATGGTGCTGCTCGAGTTCTACGGGTTCGCACCCATCGG
ATTGCCGCCAAGGAATGTGCCTGCGTCGTTAGTGGCACCGGCACTAGAAG
CCGAGGAGTTGTCATGGCCGATGGCGGCGGCGATACCGCACCATAACGGT
GTCGAGTCCATAGTCGACGCCCGGAACGTTTACGGGAGCACGGCGCTGCA
CCGTGCGGCGTTCAACGGCCGAGAGGGCGTCGTGCTGGCGCTGCTGAGGG
GAGGGGCCGACGTCTGCGTCGTTGGGAATAGCGGAAGGCGAGTGCAGGCT
TGCTCTGCGCTCCACCTCGCGTGCCAGAACGCGCACGCCGGTTGCGTTCA
GCTTCTGCTCGCCTGGGGCGCCCAGGAGTCAGCCATCGCAAAGGATGGGT
CCACCCCCTGGTCTCAGCTTGCGCTGGCCGCGGAGACCCGCCCCCGCGGC
TGCCCCCGCGTGGCCAAGACAGCTTTGCTCCTCAACACGGCGCGAGGTGC
TCGCGCTTGGGCTAGGCGGGGCTGGCTGCTGATGCTGAGGGACAAGTACA
GCCGGGGGATGTTCGAGGCAGACGACATCGATTTAGACGGTAGAGAAGGT
GCTTGTAGTTACGTGGAGGACGGCCAAAGGGAGGATTTGGCGAGGTTGGT
GAACCAACTTGTCGGGATTGGCGAGGAAGGGTGCTTCCGATTGGTGGTGG
GCTTCCTTTAG
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