mRNA_Ecto-sp13_S_contig1557.4136.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1557.4136.1
Unique NamemRNA_Ecto-sp13_S_contig1557.4136.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1557.4136.1 vs. uniprot
Match: D7FIJ6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIJ6_ECTSI)

HSP 1 Score: 264 bits (674), Expect = 2.300e-80
Identity = 185/225 (82.22%), Postives = 194/225 (86.22%), Query Frame = 1 
Query:    1 MQEEIGYRTMLLPNSGFAKKVTRPVVVNTMPGTQLTNIRKLVRTTTSSNPAHRPTMAEIAPQILAVASAVRLAMQQNVTPVASAAXXXXXVSAALPSGDVDEVQPSAHASTGSAVAVQAGAVDAPGLLGVNASAEVPLAPIFHGDALLAGGXXXXXXXXXXXXXXXXSAAGAPAVGSXXXXXXXXXXXXXXXXXXXSVAVPRHMSAEVQEALGAAEGRGAEGISG 675
            MQEEI YRTMLLPNSGFAKKVTRP VVNTMPGTQLTNIRKLVRTTTS+NPAHRPTMAEIAPQILAVASAVRLAMQQN TPVA+AA     VSAALPSGD +EVQP AHASTGSAVAV+AG  DA GL+ VNASA+VPLA I +GDALLAG XXXXXXXXXXXXX   SA GAPAVGSXXXXXXXXXXXXXXX    S AVPR M AEVQEA+ AAEGR AE +SG
Sbjct:    1 MQEEIAYRTMLLPNSGFAKKVTRPAVVNTMPGTQLTNIRKLVRTTTSANPAHRPTMAEIAPQILAVASAVRLAMQQNATPVAAAATAAAAVSAALPSGDFEEVQPPAHASTGSAVAVEAGQADAAGLVAVNASADVPLAAILYGDALLAG-XXXXXXXXXXXXXRGDSAGGAPAVGSXXXXXXXXXXXXXXXRSAASAAVPRQMGAEVQEAVAAAEGRSAEAVSG 224
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BLAST of mRNA_Ecto-sp13_S_contig1557.4136.1 vs. uniprot
Match: D7G236_ECTSI (Protein kinase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G236_ECTSI)

HSP 1 Score: 258 bits (658), Expect = 3.560e-74
Identity = 183/224 (81.70%), Postives = 191/224 (85.27%), Query Frame = 1 
Query:    4 QEEIGYRTMLLPNSGFAKKVTRPVVVNTMPGTQLTNIRKLVRTTTSSNPAHRPTMAEIAPQILAVASAVRLAMQQNVTPVASAAXXXXXVSAALPSGDVDEVQPSAHASTGSAVAVQAGAVDAPGLLGVNASAEVPLAPIFHGDALLAGGXXXXXXXXXXXXXXXXSAAGAPAVGSXXXXXXXXXXXXXXXXXXXSVAVPRHMSAEVQEALGAAEGRGAEGISG 675
            QEEI YRTMLLPNSGFAKKVTRP VVNTMPGTQLTNIRKLVRTTTS+NPAHRPTMAEIAPQILAVASAVRLAMQQN TPVASAA     VSAALPSGD +EVQP AHASTGSAVAV+AG  DA GL+ VNASA+VPLA I +GDALLAG XXXXXXXXXXXXX   SA GAPAVG XXXXXXXXXXXXXXXX   S AVPR M AE QEA+ AAEGR AE + G
Sbjct:  410 QEEIAYRTMLLPNSGFAKKVTRPAVVNTMPGTQLTNIRKLVRTTTSANPAHRPTMAEIAPQILAVASAVRLAMQQNATPVASAATAAAAVSAALPSGDFEEVQPPAHASTGSAVAVEAGQADAAGLVAVNASADVPLAAILYGDALLAG-XXXXXXXXXXXXXRGDSAGGAPAVGXXXXXXXXXXXXXXXXXSAASAAVPRQMGAEAQEAVAAAEGRSAEAVRG 632
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BLAST of mRNA_Ecto-sp13_S_contig1557.4136.1 vs. uniprot
Match: A0A6H5K0Z9_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0Z9_9PHAE)

HSP 1 Score: 207 bits (528), Expect = 2.580e-59
Identity = 139/186 (74.73%), Postives = 145/186 (77.96%), Query Frame = 3 
Query:  753 AGMGLERLDGRYGAIDRPSTERRNSSSPHGHLGGLLQGATGDGYGARMFSRSAPAVADAVEQAVGAADISVSTVPSPAGVAAGGGAAGPVGSNIGPIAARSIFAAAPVPESGDGAGFSALSSVESFGNEEGVASDGSGXXXXXXXXDARMVSIXXXXXXXXXXXXXXXXXELDGDDGDCCAAVGFG 1310
            AG GLERL GRYGAID P T  RNSSSPH HL GLLQGATGDG+  R  SRSAPAVADAV+QAVGAAD SVS   SPAGVAA  GA GPV SNIGPI  RSIFAAAPVPESGDGAGFSA SS+ S  +EEGVA DGS XXXX    D ++ SI     XXXXXXXXXXXX LDGDDGDC AAVGFG
Sbjct:  199 AGTGLERLGGRYGAIDHPPTGWRNSSSPHAHLEGLLQGATGDGFRVRALSRSAPAVADAVDQAVGAADRSVSHARSPAGVAAAAGATGPVDSNIGPIPVRSIFAAAPVPESGDGAGFSAPSSIGSLSSEEGVAGDGSXXXXXSGLADPQIASIPEAEEXXXXXXXXXXXXXLDGDDGDCSAAVGFG 384
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BLAST of mRNA_Ecto-sp13_S_contig1557.4136.1 vs. uniprot
Match: D7FSJ5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSJ5_ECTSI)

HSP 1 Score: 178 bits (451), Expect = 3.290e-48
Identity = 104/132 (78.79%), Postives = 108/132 (81.82%), Query Frame = 3 
Query:  753 AGMGLERLDGRYGAIDRPSTERRNSSSPHGHLGGLLQGATGDGYGARMFSRSAPAVADAVEQAVGAADISVSTVPSPAGVAAGG-GAAGPVGSNIGPIAARSIFAAAPVPESGDGAGFSALSSVESFGNEEG 1145
            AGMGLERL+GRYGAID P T RR+S SP  HL GLLQGATGDG+GAR   RSAPAVADAVE AVGAADISVS  PSPA VAA   GAAGPVGSNIGPI A SIFAA PVPESGDGAGFSA  SV S G+EEG
Sbjct:  209 AGMGLERLEGRYGAIDHPPTGRRSSLSPRAHLEGLLQGATGDGFGARALLRSAPAVADAVEHAVGAADISVSNAPSPADVAAAAAGAAGPVGSNIGPIPASSIFAAVPVPESGDGAGFSAPYSVGSLGSEEG 340
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BLAST of mRNA_Ecto-sp13_S_contig1557.4136.1 vs. uniprot
Match: D7G4G8_ECTSI (Serine/threonine protein kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4G8_ECTSI)

HSP 1 Score: 67.0 bits (162), Expect = 2.450e-8
Identity = 32/34 (94.12%), Postives = 32/34 (94.12%), Query Frame = 1 
Query:    4 QEEIGYRTMLLPNSGFAKKVTRPVVVNTMPGTQL 105
            QEEI YRTMLLPNSGFAKKVTRP VVNTMPGTQL
Sbjct:  410 QEEIAYRTMLLPNSGFAKKVTRPAVVNTMPGTQL 443
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1557.4136.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7FIJ6_ECTSI2.300e-8082.22Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G236_ECTSI3.560e-7481.70Protein kinase domain-containing protein n=1 Tax=E... [more]
A0A6H5K0Z9_9PHAE2.580e-5974.73Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
D7FSJ5_ECTSI3.290e-4878.79Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G4G8_ECTSI2.450e-894.12Serine/threonine protein kinase n=1 Tax=Ectocarpus... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1557contigEcto-sp13_S_contig1557:1337..3085 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score260.8
Seed ortholog evalue1.1e-66
Seed eggNOG ortholog2880.D7G236
Preferred nameUHMK1
Model size1313
KEGG koko:K08829,ko:K08877
Hectar predicted targeting categoryother localisation
GOsGO:0000166,GO:0000243,GO:0003674,GO:0003676,GO:0003723,GO:0003727,GO:0003824,GO:0004672,GO:0004674,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005684,GO:0005737,GO:0005794,GO:0006417,GO:0006446,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0007049,GO:0007050,GO:0007275,GO:0007399,GO:0008144,GO:0008150,GO:0008152,GO:0008187,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010608,GO:0010628,GO:0012505,GO:0016043,GO:0016301,GO:0016310,GO:0016604,GO:0016607,GO:0016740,GO:0016772,GO:0016773,GO:0017076,GO:0018105,GO:0018193,GO:0018209,GO:0019222,GO:0019538,GO:0019899,GO:0022008,GO:0022402,GO:0030030,GO:0030154,GO:0030182,GO:0030424,GO:0030425,GO:0030554,GO:0030628,GO:0031175,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031974,GO:0031981,GO:0032268,GO:0032270,GO:0032386,GO:0032501,GO:0032502,GO:0032553,GO:0032555,GO:0032559,GO:0032838,GO:0032839,GO:0032879,GO:0032880,GO:0032991,GO:0033157,GO:0034248,GO:0034250,GO:0035639,GO:0035770,GO:0036002,GO:0036094,GO:0036211,GO:0036464,GO:0036477,GO:0042995,GO:0043005,GO:0043021,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044463,GO:0044464,GO:0044877,GO:0045727,GO:0045786,GO:0045948,GO:0046777,GO:0046822,GO:0046825,GO:0048468,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048666,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0051049,GO:0051171,GO:0051173,GO:0051223,GO:0051246,GO:0051247,GO:0051726,GO:0060255,GO:0060341,GO:0065007,GO:0070013,GO:0070201,GO:0071004,GO:0071010,GO:0071598,GO:0071704,GO:0071840,GO:0080090,GO:0089701,GO:0090087,GO:0097159,GO:0097367,GO:0097447,GO:0097458,GO:0099568,GO:0120025,GO:0120036,GO:0120038,GO:0120111,GO:0140096,GO:1901265,GO:1901363,GO:1901564,GO:1903827,GO:1990904,GO:2000112
Exons2
EggNOG free text desc.protein serine/threonine kinase activity
EggNOG OGsKOG0032@1,KOG0032@2759
Ec32 ortholog descriptionSerine/threonine/dual specificity protein kinase, catalytic domain
Ec32 orthologEc-11_003680.1
EC2.7.11.1,2.7.11.22
Cds size1206
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01001
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462825.0749004-CDS-Ecto-sp13_S_contig1557:1336..14411681462825.0749004-CDS-Ecto-sp13_S_contig1557:1336..1441Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1557 1337..1441 +
1681462825.0884159-CDS-Ecto-sp13_S_contig1557:1877..29781681462825.0884159-CDS-Ecto-sp13_S_contig1557:1877..2978Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1557 1878..2978 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462825.1038334-UTR-Ecto-sp13_S_contig1557:2978..30851681462825.1038334-UTR-Ecto-sp13_S_contig1557:2978..3085Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1557 2979..3085 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1557.4136.1prot_Ecto-sp13_S_contig1557.4136.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1557 1337..2978 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1557.4136.1

>prot_Ecto-sp13_S_contig1557.4136.1 ID=prot_Ecto-sp13_S_contig1557.4136.1|Name=mRNA_Ecto-sp13_S_contig1557.4136.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=402bp
MQEEIGYRTMLLPNSGFAKKVTRPVVVNTMPGTQLTNIRKLVRTTTSSNP
AHRPTMAEIAPQILAVASAVRLAMQQNVTPVASAAAAAAAVSAALPSGDV
DEVQPSAHASTGSAVAVQAGAVDAPGLLGVNASAEVPLAPIFHGDALLAG
GGGGGSSGRGDGGGGGASAAGAPAVGSGVGDRLGGGDSNGGGRSAASVAV
PRHMSAEVQEALGAAEGRGAEGISGGGGRGGSEASGRAGDRAGGDAVEEK
GQAWDSRGLMVGMEPSTALPPNGATLRLRTDTWEGSCRAPPAMGMGPGCS
RAQPPRWLMPSSRRWVRPTFRFLPYRPRRVLQQEEEQRARWARTSVRSQL
APSLRQLQYRRAATVQAFLPSLPSKASATRKGSPAMGPVTEQAVDWLTRG
W*
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mRNA from alignment at Ecto-sp13_S_contig1557:1337..3085+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1557.4136.1 ID=mRNA_Ecto-sp13_S_contig1557.4136.1|Name=mRNA_Ecto-sp13_S_contig1557.4136.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1749bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1557:1337..3085+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCAGGAGGAGATTGGGTACCGTACCATGCTACTGCCCAACTCCGGCTT
CGCCAAGAAGGTGACGCGCCCGGTCGTCGTCAACACGATGCCGGGAACGC
AACTGGTGAGCTGAGCAATAACCGAACGCAGTGTCGTGTGCCCACCATAG
GGCGACGCGTGAAAATGACGTTTTGCTCCCTACATGTGCTCCCACGGCTG
CTCATGTTGTTTTCAGACCGTCACTAGAGACCACCGAAGGAGGATGTTGT
TGTAGAGTCACGCTGTCGTATGTTGGTGACGCTCAATTAGACAGAAAGAA
CACACGCCTGCAGTGTGAGTCGTGGAGACACTGAATTGAGATCGTACGTG
TAGACGGGCGCAACGACTTCGTTGCCCTAGACCGTCTAAGCACGGCTCCA
TACGAACGTTACCCTGCCTCTTAGGTCGTCCGCCTCTCATGGCTCGGATC
ATCCCCGAACTCCTTGTCCATCGCTACAACCATACCAACAACAAACCAGC
CCCCCCCATCTCGCCCACGCCCGCGTTTGTCTTGTTGTCAGACCAACATT
CGGAAGCTGGTTCGCACCACCACGTCCTCCAACCCCGCGCATAGGCCCAC
CATGGCCGAAATCGCGCCACAAATTCTTGCCGTGGCTTCGGCCGTGCGCC
TCGCGATGCAGCAGAACGTCACGCCGGTTGCTTCGGCAGCGGCGGCGGCA
GCGGCGGTTTCAGCGGCCCTTCCGAGCGGGGACGTCGACGAAGTACAACC
GTCGGCTCACGCCAGTACCGGCAGCGCGGTGGCGGTGCAGGCCGGTGCGG
TGGATGCACCAGGGCTGTTGGGGGTGAACGCGAGCGCAGAGGTACCCTTG
GCTCCCATCTTTCACGGAGACGCCTTGCTTGCGGGCGGCGGCGGCGGCGG
CAGCAGCGGCCGCGGCGATGGCGGTGGAGGCGGTGCCTCTGCAGCAGGCG
CCCCAGCCGTCGGGAGTGGTGTTGGTGACCGCCTGGGCGGCGGGGACAGC
AACGGAGGCGGGAGGAGCGCCGCCAGCGTCGCAGTCCCCCGACACATGAG
CGCCGAGGTACAAGAGGCGCTAGGGGCGGCAGAGGGCAGAGGTGCGGAGG
GGATCAGCGGAGGGGGAGGACGAGGCGGATCTGAGGCAAGCGGCCGGGCA
GGAGACAGGGCCGGTGGGGATGCCGTGGAGGAGAAGGGGCAGGCATGGGA
CTCGAGAGGCTTGATGGTCGGTATGGAGCCATCGACCGCCCTTCCACCGA
ACGGCGCAACTCTTCGTCTCCGCACGGACACTTGGGAGGGCTCCTGCAGG
GCGCCACCGGCGATGGGTATGGGGCCAGGATGTTCTCGCGCTCAGCCCCC
GCGGTGGCTGATGCCGTCGAGCAGGCGGTGGGTGCGGCCGACATTTCGGT
TTCTACCGTACCGTCCCCGGCGGGTGTTGCAGCAGGAGGAGGAGCAGCGG
GCCCGGTGGGCTCGAACATCGGTCCGATCGCAGCTCGCTCCATCTTTGCG
GCAGCTCCAGTACCGGAGAGCGGCGACGGTGCAGGCTTTTCTGCCCTCTC
TTCCGTCGAAAGCTTCGGCAACGAGGAAGGGGTCGCCAGCGATGGGTCCG
GTGACGGAGCAGGCAGTGGATTGGCTGACGCGAGGATGGTAAGCATCCCC
GAGGCGGAAGAGGATGAAGGAGACGGTGATGGGTGGGAGTGGGGCTGGGA
GTTGGATGGAGATGACGGGGACTGCTGTGCGGCCGTGGGGTTCGGTGCG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1557:1337..3085+

>mRNA_Ecto-sp13_S_contig1557.4136.1 ID=mRNA_Ecto-sp13_S_contig1557.4136.1|Name=mRNA_Ecto-sp13_S_contig1557.4136.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1206bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1557:1337..3085+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCAGGAGGAGATTGGGTACCGTACCATGCTACTGCCCAACTCCGGCTT
CGCCAAGAAGGTGACGCGCCCGGTCGTCGTCAACACGATGCCGGGAACGC
AACTGACCAACATTCGGAAGCTGGTTCGCACCACCACGTCCTCCAACCCC
GCGCATAGGCCCACCATGGCCGAAATCGCGCCACAAATTCTTGCCGTGGC
TTCGGCCGTGCGCCTCGCGATGCAGCAGAACGTCACGCCGGTTGCTTCGG
CAGCGGCGGCGGCAGCGGCGGTTTCAGCGGCCCTTCCGAGCGGGGACGTC
GACGAAGTACAACCGTCGGCTCACGCCAGTACCGGCAGCGCGGTGGCGGT
GCAGGCCGGTGCGGTGGATGCACCAGGGCTGTTGGGGGTGAACGCGAGCG
CAGAGGTACCCTTGGCTCCCATCTTTCACGGAGACGCCTTGCTTGCGGGC
GGCGGCGGCGGCGGCAGCAGCGGCCGCGGCGATGGCGGTGGAGGCGGTGC
CTCTGCAGCAGGCGCCCCAGCCGTCGGGAGTGGTGTTGGTGACCGCCTGG
GCGGCGGGGACAGCAACGGAGGCGGGAGGAGCGCCGCCAGCGTCGCAGTC
CCCCGACACATGAGCGCCGAGGTACAAGAGGCGCTAGGGGCGGCAGAGGG
CAGAGGTGCGGAGGGGATCAGCGGAGGGGGAGGACGAGGCGGATCTGAGG
CAAGCGGCCGGGCAGGAGACAGGGCCGGTGGGGATGCCGTGGAGGAGAAG
GGGCAGGCATGGGACTCGAGAGGCTTGATGGTCGGTATGGAGCCATCGAC
CGCCCTTCCACCGAACGGCGCAACTCTTCGTCTCCGCACGGACACTTGGG
AGGGCTCCTGCAGGGCGCCACCGGCGATGGGTATGGGGCCAGGATGTTCT
CGCGCTCAGCCCCCGCGGTGGCTGATGCCGTCGAGCAGGCGGTGGGTGCG
GCCGACATTTCGGTTTCTACCGTACCGTCCCCGGCGGGTGTTGCAGCAGG
AGGAGGAGCAGCGGGCCCGGTGGGCTCGAACATCGGTCCGATCGCAGCTC
GCTCCATCTTTGCGGCAGCTCCAGTACCGGAGAGCGGCGACGGTGCAGGC
TTTTCTGCCCTCTCTTCCGTCGAAAGCTTCGGCAACGAGGAAGGGGTCGC
CAGCGATGGGTCCGGTGACGGAGCAGGCAGTGGATTGGCTGACGCGAGGA
TGGTAA
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