mRNA_Ecto-sp13_S_contig15555.4131.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig15555.4131.1
Unique NamemRNA_Ecto-sp13_S_contig15555.4131.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig15555.4131.1 vs. uniprot
Match: D8LQP3_ECTSI (Sulfotransfer_1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQP3_ECTSI)

HSP 1 Score: 238 bits (607), Expect = 1.660e-68
Identity = 112/117 (95.73%), Postives = 114/117 (97.44%), Query Frame = 2 
Query:  698 RYMYHKSIVVREYLPLWQGHLSHWVAAAGDIPIYVFRYEDMLLRAEEVLRRILHALPRGWNWSEDSIAKAMRLFGPKRAFEDKCGAGVKQMSLAEVEMVRLHYGAFMRHLGYRFIKK 1048
            RYMY KSIVVREYLPLWQGHLSHWVAAAGDIPIYVFRYEDMLLRAEEVLRRILHALP GWNWSEDSIAKAMRLFGPK AFEDKCGAGV+QMS+AEVEMVRLHYGAFMRHLGYRFIKK
Sbjct:  316 RYMYKKSIVVREYLPLWQGHLSHWVAAAGDIPIYVFRYEDMLLRAEEVLRRILHALPGGWNWSEDSIAKAMRLFGPKTAFEDKCGAGVRQMSVAEVEMVRLHYGAFMRHLGYRFIKK 432
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BLAST of mRNA_Ecto-sp13_S_contig15555.4131.1 vs. uniprot
Match: A0A6H5KN31_9PHAE (Sulfotransfer_1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN31_9PHAE)

HSP 1 Score: 198 bits (503), Expect = 1.590e-53
Identity = 90/116 (77.59%), Postives = 103/116 (88.79%), Query Frame = 2 
Query:  698 RYMYHKSIVVREYLPLWQGHLSHWVAAAGDIPIYVFRYEDMLLRAEEVLRRILHALPRGWNWSEDSIAKAMRLFGPKRAFEDKCGAGVKQMSLAEVEMVRLHYGAFMRHLGYRFIK 1045
            RYM  K+  +R+YLP+WQGHLSHWVAAAGDIPIYVFRYEDMLLRAEEVLRRIL+ LP GWNWSE+SIA+AM LFGPK+ F+ KCGAGV + SLAEVEMVR HYGA+MRH GYRF++
Sbjct:  310 RYMAGKAPCLRDYLPVWQGHLSHWVAAAGDIPIYVFRYEDMLLRAEEVLRRILNTLPGGWNWSEESIARAMSLFGPKKPFKQKCGAGVPRASLAEVEMVRRHYGAYMRHFGYRFVE 425
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BLAST of mRNA_Ecto-sp13_S_contig15555.4131.1 vs. uniprot
Match: A0A6H5KVH5_9PHAE (Sulfotransfer_1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVH5_9PHAE)

HSP 1 Score: 154 bits (389), Expect = 1.890e-37
Identity = 73/81 (90.12%), Postives = 76/81 (93.83%), Query Frame = 2 
Query:  698 RYMYHKSIVVREYLPLWQGHLSHWVAAAGDIPIYVFRYEDMLLRAEEVLRRILHALPRGWNWSEDSIAKAMR-LFGPKRAF 937
            RYMYHKSIVVREYLPLWQGHLSHWVAAAGDIPIYVFRYEDMLLRAEEVLRRILHALP GWNWSEDSIAKAMR +  P+ +F
Sbjct:  316 RYMYHKSIVVREYLPLWQGHLSHWVAAAGDIPIYVFRYEDMLLRAEEVLRRILHALPGGWNWSEDSIAKAMRQVVRPQESF 396
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BLAST of mRNA_Ecto-sp13_S_contig15555.4131.1 vs. uniprot
Match: A0A835YVS2_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVS2_9STRA)

HSP 1 Score: 131 bits (330), Expect = 1.600e-30
Identity = 55/103 (53.40%), Postives = 74/103 (71.84%), Query Frame = 2 
Query:  725 VREYLPLWQGHLSHWVAAAGDIPIYVFRYEDMLLRAEEVLRRILHALPRGWNWSEDSIAKAMRLFGPKRAFEDKCGAGVKQMSLAEVEMVRLHYGAFMRHLGY 1033
            +R++LP+W GHL+HWVA   D+PI  FRYED+L RA++VL ++L AL  GW WS +SI +A+R +GP+  FEDKCG  +   +LAEVEMVR HY   +   GY
Sbjct:  188 LRKWLPVWAGHLTHWVADTRDLPIIAFRYEDLLWRADKVLEQVLRALGPGWEWSRESIERAVRTYGPREPFEDKCGKAIPHYTLAEVEMVRKHYAGLLGRFGY 290
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BLAST of mRNA_Ecto-sp13_S_contig15555.4131.1 vs. uniprot
Match: D8LQP4_ECTSI (F-box domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQP4_ECTSI)

HSP 1 Score: 128 bits (322), Expect = 3.430e-27
Identity = 58/71 (81.69%), Postives = 65/71 (91.55%), Query Frame = 2 
Query:  698 RYMYHKSIVVREYLPLWQGHLSHWVAAAGDIPIYVFRYEDMLLRAEEVLRRILHALPRGWNWSEDSIAKAM 910
            RYM  K+  +R+YLP+WQGHLSHWVAAAGDIPIYVFRYEDMLLRAEEVLRRIL+ LP GWNWSE+SIA+AM
Sbjct: 1045 RYMAGKAQCLRDYLPVWQGHLSHWVAAAGDIPIYVFRYEDMLLRAEEVLRRILNTLPGGWNWSEESIARAM 1115
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15555.4131.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D8LQP3_ECTSI1.660e-6895.73Sulfotransfer_1 domain-containing protein n=1 Tax=... [more]
A0A6H5KN31_9PHAE1.590e-5377.59Sulfotransfer_1 domain-containing protein n=1 Tax=... [more]
A0A6H5KVH5_9PHAE1.890e-3790.12Sulfotransfer_1 domain-containing protein n=1 Tax=... [more]
A0A835YVS2_9STRA1.600e-3053.40P-loop containing nucleoside triphosphate hydrolas... [more]
D8LQP4_ECTSI3.430e-2781.69F-box domain-containing protein n=1 Tax=Ectocarpus... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15555contigEcto-sp13_S_contig15555:317..3820 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score238.8
Seed ortholog evalue1.5e-60
Seed eggNOG ortholog2880.D8LQP3
Model size1839
Hectar predicted targeting categoryother localisation
Exons4
EggNOG OGs2EZ9R@1,2T0MS@2759
Cds size414
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15555.4131.1prot_Ecto-sp13_S_contig15555.4131.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig15555 1105..3183 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462824.7589588-UTR-Ecto-sp13_S_contig15555:316..11041681462824.7589588-UTR-Ecto-sp13_S_contig15555:316..1104Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig15555 317..1104 -
1681462824.8150792-UTR-Ecto-sp13_S_contig15555:3183..38201681462824.8150792-UTR-Ecto-sp13_S_contig15555:3183..3820Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig15555 3184..3820 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462824.7702887-CDS-Ecto-sp13_S_contig15555:1104..11731681462824.7702887-CDS-Ecto-sp13_S_contig15555:1104..1173Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15555 1105..1173 -
1681462824.7790678-CDS-Ecto-sp13_S_contig15555:1579..16491681462824.7790678-CDS-Ecto-sp13_S_contig15555:1579..1649Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15555 1580..1649 -
1681462824.7907755-CDS-Ecto-sp13_S_contig15555:2225..22911681462824.7907755-CDS-Ecto-sp13_S_contig15555:2225..2291Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15555 2226..2291 -
1681462824.803409-CDS-Ecto-sp13_S_contig15555:2974..31831681462824.803409-CDS-Ecto-sp13_S_contig15555:2974..3183Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15555 2975..3183 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig15555.4131.1

>prot_Ecto-sp13_S_contig15555.4131.1 ID=prot_Ecto-sp13_S_contig15555.4131.1|Name=mRNA_Ecto-sp13_S_contig15555.4131.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=138bp
MPQRDQLKEAPLVSVSYAVPRYMYHKSIVVREYLPLWQGHLSHWVAAAGD
IPIYVFRYEDMLLRAEEVLRRILHALPRGWNWSEDSIAKAMRLFGPKRAF
EDKCGAGVKQMSLAEVEMVRLHYGAFMRHLGYRFIKK*
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mRNA from alignment at Ecto-sp13_S_contig15555:317..3820-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig15555.4131.1 ID=mRNA_Ecto-sp13_S_contig15555.4131.1|Name=mRNA_Ecto-sp13_S_contig15555.4131.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3504bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15555:317..3820- (Ectocarpus species13 EcNAP12_S_4_19m)
GTTCCTATTTTGTTTGGTGTTTTCGCCTGTTGTTGTCGTCTTTGTGCAGA
GCCCGTCTTCTAGCCTATACCGCTAATAGAATGCATCCCTGAATGCATCG
TTCTTTGGGAGGGTGAGAAGGCGTGCCCGTGGACGGTCTTATTCCTTTTC
GAGAAGTCTGGCAGGGCAATGCGCGTAGCAGCTTTAATCTAGAGGTACCA
TGGAACGGATGAGGCGGGGGTGGTTGCTTGGCGTGCACACGCACGCGCGG
CGCACACAAGTGAGAATATACAGCTTTAGCGTGCACGGTTGCGGCGGGCA
GGAGCTGTTCGCTGGTGTAGAGGTCATCATCGTTATGCGACGGGTTGAAA
CGCGAAAATCAGGGTAATCATCATCGTACACGCGATGAGTCCAAATGCGA
GCCTCAGGGAAACAAAGGGGCCGGATTATTTCGGCTTGAGGCGAGAATGG
GTTGAAAGGTGGGGGACGGTGGAGAGGATGGGTGGTTTGGCCCTGCACCG
GCCAAAATGCGACCTTTCGTCATTCCTCAGAACGACCTCGTTGTCAGAGC
AGGCTCGTCAGGGTACACAAGTGTACTCTGCACATGAATGTGAATGACGT
GGGGCTGCGCCGCCGTGGCTGAAGCCTGAGTTCGTAGATGCCGCAAAGGG
ACCAGTTAAAAGAGGCCCCCCTCGTGTCCGTCTCATACGCGGTTCCAAGG
TATATGTACCACAAGTCTATCGTTGTGAGGGAGTACTTGCCACTGTGGCA
GGGACACCTGTCCCATTGGGTGGCGGCGGCCGGCGACATCCCCATTTACG
TCTTCCGGTATGAGGACATGCTGCTCAGGGCCGAAGAAGTTCTCAGGTAT
GCGATTCTACGCCTGCTTACGTTCCTGCTGCGTTGGTTGTTATTTTTTGT
TTTCGTTACCATTTTTGTGGGCTTGCCGCTGACATGAGTCGAACTGCTGT
GATTGCACTTGTTGTTGCTGGGAACGTCATACCCTATTGAAACCAAAACC
AATCCGTTAGACCAGTCAGCGCTGGCTAGTTTAATGGTGTGAGTTTGGCT
TCCAAATATTTTAATGGGGTCTGGCACTTTCACTTCGGACGAGGTTGATT
ACCATTGCCAGCGCTACCGTCCGTCCACTCTTTATTTTGCTTCATATCTC
TCGCCACCCACATCGTGCAGAATGTTCTAGGGTCTCAGACGAACCCTTCC
GTCACCGATAATTTGGCCGGGAGTATCCTGGTTCTCAGGGAAAAGACACC
TCAGAGCGTCTAGCCTGGGTCTCGCACCCACATCTAGCTTATATCGAAGC
CGAAATCAAACTATTTTACTAGCCAGCGATGACTAGGCCGATGGTTTGAG
TTCGGCTTCTAATACTCACAGCCGAAGACGAAATTTAGAGGGAGTTCCTC
TTGGAATGCCAAGCTTCGCTGGATTTAGTCCCAACAGTTCCCTGGTCTTA
GCTGCTGAGGTGTCGATATTCGCTTACGGTCGATGGTGCTGCCTTTGCTG
GGGCATGTTCCCTCTCCGTCGCTTTGCAGGAGAATACTTCACGCTTTACC
CCGCGGGTGGAATTGGTCCGAGGACTCGATCGCCAAGGCGATGAGGCAAG
TGCACGGTCCCTTGCGTGTGTGAATGGTGCTGGTCAAACTGTAGCAACCA
CGCTCCCAACTCCTACGCCAGGTTCGCTGCCCAGCTGGCTCAGCACTTTG
GACACGGCCTTCATCGGAGTTGCCTTCGGGATGACAGGCTGCGATTCGCT
CAAGGGGTCAGGGGAAGACCTTGGTAGGAAAGCGTCCAAACTCGAGAACC
AGCTGTAGCGCGTTGTTCTTGAAAGCCAACTATTCAAATGCGTGGTGGCA
CGGTAATGGGTGAACCGACAAACAGACTGCATCTAGCTGTTAGCACTCTT
CATGCTACTTCTTCTGCATGTTTGTTGTTCCCGCATCGCGGGGCGAGGCA
GGAGGCGCAGCAGTAGCATTCCTAAGGTGACCAGTCGATAGCGTACATCC
CGACTGCCGTACGGTGGAGACGGCACGCGTTTTAGTCCTCTTGGCATACC
GTTGGTTCATGGACTATGTCCCCCACGCGGCCCACCAATAACCACATGTC
CGTCGCGCCGTTTAAACTTTTCTTGCTTTCCTCGGGATGGAACGTACGGT
AACGAACCGTGGCGGTGGTAGGTTGTTCGGCCCCAAGAGAGCTTTCGAGG
ACAAGTGCGGGGCCGGTGTCAAGCAGATGAGCCTTGCAGAGGTGAGAAAA
CTCAACGAACAAATGGACCTCGACATCATTCGCGGGGAGGGGACCGCATA
GGAGACCACGAGTGATGATGACGCCCCATTGATTTTTCGGGGCGCAGGCG
ACGGGGGGGCTGGGTTTGCGCACCGGAGGGACGTCGACACGCATGCCACG
CGACGAGAACGCATCAGAAGACAGCCTCCCGGATGGTTGCTTAGGAGGCC
GAAGACACGAAATGCGACCCCCTTTCGCGGGGGCCGTGGTTTTTTCGGAG
GGTTTGGAGACATGTTGGTGTTGGCACCCGTTACTTTCCTTGACGTACAC
GCGGTGTGTTTCTGCGGAGTCGGTCATATTCATGTGAAGGGTGACGACGT
TGCTCACCTTGTTCCTTGTGTTGCACGCACGCCTGATTTTTCGACAGGTG
GAAATGGTGCGCCTGCACTACGGTGCCTTCATGCGACACTTGGGATACCG
TTTCATTAAGAAATGATGAACGTGGTGCTTCGGTACAACCGATGGGCCTC
TTTCTCTCTTTCACGGCACTCCCGAAAGGAAACAAAACCAGTCGCCGCCA
ACGACAACTTCTGGTGTGGAGGAATTTCGGCAGAGTTGTTCCGTGGGAGA
CCGACACGGGGTTCAAAAGTTGTTCTTCCTTGTGCTATTATAAGAAACGT
AAGCCTGCCGTGAGTGTCTGGCTAAATGTTGGAATATAATAAAATATATA
TGCTGCTGTGCACGACGAGTGATGCATTGCTGTCCAGCCTATCGAATGTA
CACGTCAGCAAAGCTAGAACCTTCTTGAGCCGCCCGAAAATGGGCGAAGA
TGGGCCTAGGCCTCCGTGTCCACAGCCGAACGAATTTCACGGCGTACTCG
GGCGAGGACATGTTTACTTTTAGGGCTTGTTGTACCGGTGCATGGGTTTT
GTTTCTCACGTTGGGCCGGGTGATTTTATGGCGTACGCAGTGGTGATGGC
GGGATGACCAATTTCTCGCCATCGCACGCATTTGGTCTTGTTTTATTGTT
AAGCTCGAAACTAGATCTTAGATTTAATCTTTTCTTTGACGCGCCGATAC
GGTATTCACTTGTCTATTCAGGAGCTGATACAAATAGTTTTTGAGATTGG
TTACACTTGTAGTCTAGTTTATGAGATGGTTTACAAATTTAGTTGTGAGA
TAGTCTACAATGTATGGTTAGGGTAGCTTCTTTCTCCACGACAGGGACTT
CATTCCGATGAAAGCCCACGCCCGCGGCAAGATGAACCAAGAGTTTAAGA
CGAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15555:317..3820-

>mRNA_Ecto-sp13_S_contig15555.4131.1 ID=mRNA_Ecto-sp13_S_contig15555.4131.1|Name=mRNA_Ecto-sp13_S_contig15555.4131.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=414bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15555:317..3820- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCCGCAAAGGGACCAGTTAAAAGAGGCCCCCCTCGTGTCCGTCTCATA
CGCGGTTCCAAGGTATATGTACCACAAGTCTATCGTTGTGAGGGAGTACT
TGCCACTGTGGCAGGGACACCTGTCCCATTGGGTGGCGGCGGCCGGCGAC
ATCCCCATTTACGTCTTCCGGTATGAGGACATGCTGCTCAGGGCCGAAGA
AGTTCTCAGGAGAATACTTCACGCTTTACCCCGCGGGTGGAATTGGTCCG
AGGACTCGATCGCCAAGGCGATGAGGTTGTTCGGCCCCAAGAGAGCTTTC
GAGGACAAGTGCGGGGCCGGTGTCAAGCAGATGAGCCTTGCAGAGGTGGA
AATGGTGCGCCTGCACTACGGTGCCTTCATGCGACACTTGGGATACCGTT
TCATTAAGAAATGA
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