mRNA_Ecto-sp13_S_contig155.4100.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig155.4100.1
Unique NamemRNA_Ecto-sp13_S_contig155.4100.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig155.4100.1 vs. uniprot
Match: D7G886_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G886_ECTSI)

HSP 1 Score: 46.6 bits (109), Expect = 3.650e-5
Identity = 21/23 (91.30%), Postives = 23/23 (100.00%), Query Frame = 3 
Query:    3 SPPYPTHRSFKKRTKRTSEFRRP 71
            SPPYPT+RSFKKRT+RTSEFRRP
Sbjct:    3 SPPYPTYRSFKKRTERTSEFRRP 25
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig155.4100.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G886_ECTSI3.650e-591.30Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig155contigEcto-sp13_S_contig155:35301..35513 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size214
Hectar predicted targeting categoryother localisation
Exons1
Cds size213
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462822.645434-CDS-Ecto-sp13_S_contig155:35300..355131681462822.645434-CDS-Ecto-sp13_S_contig155:35300..35513Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig155 35301..35513 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig155.4100.1prot_Ecto-sp13_S_contig155.4100.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig155 35301..35513 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig155.4100.1

>prot_Ecto-sp13_S_contig155.4100.1 ID=prot_Ecto-sp13_S_contig155.4100.1|Name=mRNA_Ecto-sp13_S_contig155.4100.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=71bp
LRRRTRHIALSRNVQNVPVSSGGRRVQFDGSILLLRAPLSSAAGAPPEAP
LATPGLPEYQAPRKRERTQFL
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mRNA from alignment at Ecto-sp13_S_contig155:35301..35513+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig155.4100.1 ID=mRNA_Ecto-sp13_S_contig155.4100.1|Name=mRNA_Ecto-sp13_S_contig155.4100.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=213bp|location=Sequence derived from alignment at Ecto-sp13_S_contig155:35301..35513+ (Ectocarpus species13 EcNAP12_S_4_19m)
CTTCGCCGCCGTACCCGACACATCGCTCTTTCAAGAAACGTACAAAACGT
ACCAGTGAGTTCAGGCGGCCGCCGCGTCCAGTTTGATGGCTCAATTCTCC
TGCTGCGGGCGCCTCTCTCCTCTGCTGCGGGCGCCCCTCCAGAAGCGCCG
CTCGCGACTCCCGGTCTCCCAGAATACCAGGCTCCCAGAAAGAGAGAAAG
AACGCAATTTCTT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig155:35301..35513+

>mRNA_Ecto-sp13_S_contig155.4100.1 ID=mRNA_Ecto-sp13_S_contig155.4100.1|Name=mRNA_Ecto-sp13_S_contig155.4100.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=213bp|location=Sequence derived from alignment at Ecto-sp13_S_contig155:35301..35513+ (Ectocarpus species13 EcNAP12_S_4_19m)
CTTCGCCGCCGTACCCGACACATCGCTCTTTCAAGAAACGTACAAAACGT
ACCAGTGAGTTCAGGCGGCCGCCGCGTCCAGTTTGATGGCTCAATTCTCC
TGCTGCGGGCGCCTCTCTCCTCTGCTGCGGGCGCCCCTCCAGAAGCGCCG
CTCGCGACTCCCGGTCTCCCAGAATACCAGGCTCCCAGAAAGAGAGAAAG
AACGCAATTTCTT
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