mRNA_Ecto-sp13_S_contig15465.4084.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig15465.4084.1
Unique NamemRNA_Ecto-sp13_S_contig15465.4084.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig15465.4084.1 vs. uniprot
Match: D8LQ27_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQ27_ECTSI)

HSP 1 Score: 495 bits (1274), Expect = 5.300e-173
Identity = 270/286 (94.41%), Postives = 276/286 (96.50%), Query Frame = 1 
Query:  181 MMAAPTPGRESEGERTWIMAKRVASNWEKEDESSGNRLSAPEASQPSPAVPKTFVSTRLRHLRLSPDGTTLVVKSEQGGVDHELALDELLEVHETPSEESVTLMGTDIEIRIAFKGQAKALKQFRNMLVPTGTTGTTTPTQGDADRSTTVTTIKDPMGSSGGAAPPSPAEGVQAREAVAAGGPSPNEASLDGRNTAGSNYQQQHSLGGIDEGSTYAREAPSSRSAATTTPAGMGKMTSNVSTSVISPGSSVSGWGSVMGPGDGNLAADNATQRQLADITERAGAAQ 1038
            MMAAPTPGRESEGERTWIMAKRVASNWEKEDESS NRLSAPEASQPSPAVPKTFVSTRLRHLRLSPDGTTLVVKSEQGGVDHELALDELLEVHETPSEESVTLMGTDIEIRIAFKGQAKALKQFRNMLVPTGTTGTTTP++ DADRSTTVTTIKDPMGSSGGAAPPSPAE +QAREA AAGGPS N A LDGRNTAGSNYQQQH LGGIDEGSTYAREAPSSRSAA TTPAGMGKMTS+V+ SVISPGSSVSGWGSVMGPGDGNLAA+NATQRQLADITERAGAAQ
Sbjct:    1 MMAAPTPGRESEGERTWIMAKRVASNWEKEDESSRNRLSAPEASQPSPAVPKTFVSTRLRHLRLSPDGTTLVVKSEQGGVDHELALDELLEVHETPSEESVTLMGTDIEIRIAFKGQAKALKQFRNMLVPTGTTGTTTPSEVDADRSTTVTTIKDPMGSSGGAAPPSPAEELQAREAAAAGGPSTNGAYLDGRNTAGSNYQQQHGLGGIDEGSTYAREAPSSRSAAATTPAGMGKMTSSVTNSVISPGSSVSGWGSVMGPGDGNLAAENATQRQLADITERAGAAQ 286
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15465.4084.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LQ27_ECTSI5.300e-17394.41Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15465contigEcto-sp13_S_contig15465:709..3994 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size1038
Hectar predicted targeting categoryother localisation
Exons6
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-15_001190.1
Cds size1038
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15465.4084.1prot_Ecto-sp13_S_contig15465.4084.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig15465 709..3994 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462821.495724-CDS-Ecto-sp13_S_contig15465:708..9121681462821.495724-CDS-Ecto-sp13_S_contig15465:708..912Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15465 709..912 -
1681462821.5175138-CDS-Ecto-sp13_S_contig15465:1437..16041681462821.5175138-CDS-Ecto-sp13_S_contig15465:1437..1604Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15465 1438..1604 -
1681462821.526906-CDS-Ecto-sp13_S_contig15465:2144..23581681462821.526906-CDS-Ecto-sp13_S_contig15465:2144..2358Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15465 2145..2358 -
1681462821.5366488-CDS-Ecto-sp13_S_contig15465:2878..29931681462821.5366488-CDS-Ecto-sp13_S_contig15465:2878..2993Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15465 2879..2993 -
1681462821.5460558-CDS-Ecto-sp13_S_contig15465:3419..36681681462821.5460558-CDS-Ecto-sp13_S_contig15465:3419..3668Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15465 3420..3668 -
1681462821.5557938-CDS-Ecto-sp13_S_contig15465:3905..39941681462821.5557938-CDS-Ecto-sp13_S_contig15465:3905..3994Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15465 3906..3994 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig15465.4084.1

>prot_Ecto-sp13_S_contig15465.4084.1 ID=prot_Ecto-sp13_S_contig15465.4084.1|Name=mRNA_Ecto-sp13_S_contig15465.4084.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=346bp
SGAGRVGAAKIVFTLSEMLGGTNAARLVRRSASVPDDEGDDDADPSGRAS
SVRSTPGSSEMMAAPTPGRESEGERTWIMAKRVASNWEKEDESSGNRLSA
PEASQPSPAVPKTFVSTRLRHLRLSPDGTTLVVKSEQGGVDHELALDELL
EVHETPSEESVTLMGTDIEIRIAFKGQAKALKQFRNMLVPTGTTGTTTPT
QGDADRSTTVTTIKDPMGSSGGAAPPSPAEGVQAREAVAAGGPSPNEASL
DGRNTAGSNYQQQHSLGGIDEGSTYAREAPSSRSAATTTPAGMGKMTSNV
STSVISPGSSVSGWGSVMGPGDGNLAADNATQRQLADITERAGAAQ
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mRNA from alignment at Ecto-sp13_S_contig15465:709..3994-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig15465.4084.1 ID=mRNA_Ecto-sp13_S_contig15465.4084.1|Name=mRNA_Ecto-sp13_S_contig15465.4084.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3286bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15465:709..3994- (Ectocarpus species13 EcNAP12_S_4_19m)
AGCGGGGCGGGACGGGTGGGCGCTGCGAAGATCGTTTTTACGTTGTCAGA
GATGCTTGGGGGCACGAATGCAGCCAGGCTTGTGAGGAGGTGAGACGGGG
AGAGAGGAAAATGGAGAGAGTGGACATGTTCTGTCGAAGGTTTGTAGTAT
AATCACACGTCCCCCGGAATAAGCGCGACGCGTAGTCTAGAACTTGAGTT
GTGTTCACGAGACACCTGGCGCTCGAGCCCCAACTTCTTGAACTCTCAGG
TTCGTATCTCATCTCTCCCCGCAACTCACTCACGTACCCCTCCTCCCCCT
CACCTTTTTTTTTAATGTTTATATAGAAGCGCTAGCGTGCCGGACGACGA
GGGCGACGACGACGCCGACCCCAGCGGCCGCGCCTCCTCAGTGCGGTCCA
CCCCGGGCAGCAGCGAGATGATGGCGGCCCCCACCCCCGGCCGAGAGTCG
GAGGGCGAGAGGACCTGGATCATGGCCAAGCGGGTCGCGTCCAACTGGGA
GAAGGAGGACGAGAGCAGCGGGAACCGCCTCTCTGCGCCGGAGGCTAGCC
AGCCTTCCCCCGCGGTGCCGAAGACGTGAGTCGAAGTGGTTGGGGGGGGT
TGCGGGGGGGTGGGGGGGGGAAACAGAGGGGTGCGAAGGGTATGGCGGTT
AGCGGTGTAGTCGAAGAACATTTGTTCCCAGGGAATCATTTGTTCGACCA
CAGGGCAGTCTAGTGGTTTGATAGGTCCAGGGTAGTATCGGCATGCACGC
GTGTGGATGGTTCCTGATTGCTCCAGACTAGAGAGAAGTGATGGTCCTTC
TCCAATCCGTAACGGTCTGACTCAACTGTGATACCGCTAATCGAACGTGT
TGTACGTACATGCACACGCTTTAGGTAGGTATACCTGGCCCTCCAATGAA
AAGAAAGACGGTGAGTTTCACAGCGGGACCATAACCAAGAACTCGCCTCT
TCTTGTTTTGTCTCTTTTTGTGTGTCTCCTTGTCGTGTTGGGGTTCCGCA
GATTCGTGTCTACCCGGCTGCGGCACCTTCGTCTCTCCCCCGACGGCACT
ACCCTGGTGGTCAAGTCCGAGCAGGGGGGCGTCGACCATGAGCTAGCGCT
GGACGAGCTCCTGGAGGTGCGTGGGCTGAGGACCCTTACCATTCGGTTTT
GTCACCCGTTTCGGTTTGATGCGCGTTTAGCCCTCAAGGGTCAGGTCTTG
CAGCTCCGCTGCTGTAGGTGTTTCTGATATGTTTGTCTCGACCCTTTTGG
CCACTAAGCCAACCAACCCACTGCCGTAGAAAACCCGATTTTTGTAAATG
CGTGCATATCTTCGTACTCCAATACATGCTCATGTCCGACGCTTGCCCTC
GTTGGTAGGAGCTGTCTGAAACGGTGGTCGCGTTCGTATTTTATGAGGGC
CATCGCTTTGATGCGCTTGACCGTTAACGGCTAGAAGTGCTGCTCTGCCA
TCGCAGCTGCTTTTGTTCTTGTTTCTCGGTCCCCTCAATTTCTATGGTCA
ATTTCGTGCTGTAACACACGACATGCGTGCGAGAGGTTATCCCCATGTTG
GAAGGAGTACGAAGGGGCGGTGCGAGGCCAACCACCTACCACTTATTCCT
CAATCAACTCGCGCGTAACCCCTCCCCCTACTCCAGGTTCACGAAACGCC
TTCAGAGGAGAGCGTGACCCTCATGGGCACAGACATCGAGATCCGCATCG
CGTTCAAGGGGCAGGCCAAGGCTCTGAAGCAGTTCCGCAACATGCTGGTG
CCGACGGGTACGACTGGAACCACTACCCCCACGCAGGGGGACGCTGACCG
GTCCACGACTGTGACTACCATCAAGGACCCTATGGGCTCGTCAGGGGGAG
GTGAGGACGCTCCTCTGTGTGTGTGTGTGTGTGTTGATTGTTAGCATCGA
CCGCGCTAACCGGCTGACGAATGAAATGACGTCAGTCTTAGTGGGACGGG
GGCGGCATGGGGGAGGCTAAGCTATTCACCGGATCAAAGACAGCAACGGT
AGCAACAGAAGAAAACTGCATGTGTCTACGAAGTGTGTGTATCTCTGTCT
GTCTCTCTTTCTGTGTCTGTCTGTCTCTCTCCCTCGCTCCCTGTTTGTCT
CTCTCTCCTTGCCTTCCTTTGTTAGTTGTTGGGTGGAAGCACGGATATTC
GAAACCGTGTAGCTCGTGTGGTGTGGGTGTGTTTTTGTTTTTGGCGTCGA
CCGCCTCAACCGGCTGACCAATCAAAAGAGCAGTGCCAGCGGGTAGGAGG
TCGTCGAGACGGAAAAATACGACACACCCGCCTTCAGCGTAAGTGACTGG
TCGTGTCTTCGAATTCCCTTGCTGTCTACGATCTCAATTCTTGCCGCCGC
CACCGCCTCCGACCGTGCCACCCTCCCCCCTCCCAAATAGCGGCACCCCC
ATCTCCAGCCGAAGGAGTACAAGCAAGAGAAGCAGTAGCGGCAGGAGGAC
CCTCTCCCAACGAAGCCTCTTTGGACGGGCGTAACACCGCTGGCAGCAAC
TACCAACAGCAACACAGCCTGGGCGGCATCGATGAGGGCTCGACGTACGC
TCGCGAGGTGAGTTGGGGGTGACGGCGTATGTGTGCGGCACTGGGGGGAG
GGGGTGGGTGGGGATGTCGGACCGGAGTTTCCGAGGAAAATACGATAATG
CTCTTGATGGGAGATGGTAAAGACTAACCACAGGGCACGGTAGGATGCAC
GTCATGCCAACATAGCGCGAGGACTATAGGCAGGGGATACGGCGAGCAAG
AAATTACCATGCGGAGCACGCCACATGCCGACTTGGAGGGCGCCCGACAT
CCTGTTCTCATCTCCAAGTAGTAAGGAGTGTAGCCTTATCGTGCGTTGTC
TCCCCTTGAAATGGACCGCTTGGTGAACGGTCGACGACGACTGGTTTGCT
GAAGGCAAGCAGCAAATGAGCATCCCTCCCCAGTGTACATGAGTACACCC
CCGACGTAGAAGCAGTAAATTCTCAACGGTTACTCCGTTTGAAAACAAAT
GCTTGAGAACCTCTATTTACTCAACGCAACCAGGAAGAATGAGAACCTCC
CCCCCCCCCCCACACCGGCCTTTCACCCGCAGGCCCCCTCGTCGAGGTCG
GCGGCGACGACGACGCCGGCGGGCATGGGAAAGATGACCTCAAACGTGTC
CACCAGCGTCATCTCTCCCGGCTCCAGCGTGTCCGGCTGGGGAAGCGTCA
TGGGTCCTGGCGATGGCAACCTTGCCGCGGACAACGCCACCCAGAGGCAG
CTCGCCGACATCACGGAGCGAGCCGGTGCTGCTCAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15465:709..3994-

>mRNA_Ecto-sp13_S_contig15465.4084.1 ID=mRNA_Ecto-sp13_S_contig15465.4084.1|Name=mRNA_Ecto-sp13_S_contig15465.4084.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1038bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15465:709..3994- (Ectocarpus species13 EcNAP12_S_4_19m)
AGCGGGGCGGGACGGGTGGGCGCTGCGAAGATCGTTTTTACGTTGTCAGA
GATGCTTGGGGGCACGAATGCAGCCAGGCTTGTGAGGAGAAGCGCTAGCG
TGCCGGACGACGAGGGCGACGACGACGCCGACCCCAGCGGCCGCGCCTCC
TCAGTGCGGTCCACCCCGGGCAGCAGCGAGATGATGGCGGCCCCCACCCC
CGGCCGAGAGTCGGAGGGCGAGAGGACCTGGATCATGGCCAAGCGGGTCG
CGTCCAACTGGGAGAAGGAGGACGAGAGCAGCGGGAACCGCCTCTCTGCG
CCGGAGGCTAGCCAGCCTTCCCCCGCGGTGCCGAAGACATTCGTGTCTAC
CCGGCTGCGGCACCTTCGTCTCTCCCCCGACGGCACTACCCTGGTGGTCA
AGTCCGAGCAGGGGGGCGTCGACCATGAGCTAGCGCTGGACGAGCTCCTG
GAGGTTCACGAAACGCCTTCAGAGGAGAGCGTGACCCTCATGGGCACAGA
CATCGAGATCCGCATCGCGTTCAAGGGGCAGGCCAAGGCTCTGAAGCAGT
TCCGCAACATGCTGGTGCCGACGGGTACGACTGGAACCACTACCCCCACG
CAGGGGGACGCTGACCGGTCCACGACTGTGACTACCATCAAGGACCCTAT
GGGCTCGTCAGGGGGAGCGGCACCCCCATCTCCAGCCGAAGGAGTACAAG
CAAGAGAAGCAGTAGCGGCAGGAGGACCCTCTCCCAACGAAGCCTCTTTG
GACGGGCGTAACACCGCTGGCAGCAACTACCAACAGCAACACAGCCTGGG
CGGCATCGATGAGGGCTCGACGTACGCTCGCGAGGCCCCCTCGTCGAGGT
CGGCGGCGACGACGACGCCGGCGGGCATGGGAAAGATGACCTCAAACGTG
TCCACCAGCGTCATCTCTCCCGGCTCCAGCGTGTCCGGCTGGGGAAGCGT
CATGGGTCCTGGCGATGGCAACCTTGCCGCGGACAACGCCACCCAGAGGC
AGCTCGCCGACATCACGGAGCGAGCCGGTGCTGCTCAG
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