mRNA_Ecto-sp13_S_contig10424.407.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig10424.407.1
Unique NamemRNA_Ecto-sp13_S_contig10424.407.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig10424.407.1 vs. uniprot
Match: D7FGY1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGY1_ECTSI)

HSP 1 Score: 302 bits (774), Expect = 3.190e-93
Identity = 146/152 (96.05%), Postives = 149/152 (98.03%), Query Frame = 3 
Query: 1593 FVQNIADFKHHEAGLAILPDYSRQRTHDELRGNPWIAACAPLLLFCSVERMLMNADLEDQLDDKLLDIECDLRMVAEGFIGEHEEQQRHMDVMKDARQHSSCHCHRSEGVGMPPLDVLLEFLRQMCVVVKVRRHLLHAWRRVMLFGDVEFGR 2048
            FVQNIADFKHHEAGLAILPDYSRQRTHDELRGNPWIAACAPLLLFCSVERMLMNADLEDQLD+KLLDIECDL+MVAEGFIGEHEEQQR MDVM DARQ+SSCHCHRSEGVGMPPLDVLLEFLRQM VVVKVRRHLLHAWRRVMLFGDVEFGR
Sbjct:   17 FVQNIADFKHHEAGLAILPDYSRQRTHDELRGNPWIAACAPLLLFCSVERMLMNADLEDQLDEKLLDIECDLKMVAEGFIGEHEEQQRQMDVMTDARQYSSCHCHRSEGVGMPPLDVLLEFLRQMGVVVKVRRHLLHAWRRVMLFGDVEFGR 168
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BLAST of mRNA_Ecto-sp13_S_contig10424.407.1 vs. uniprot
Match: A0A6H5JIA1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIA1_9PHAE)

HSP 1 Score: 302 bits (774), Expect = 1.510e-92
Identity = 146/150 (97.33%), Postives = 147/150 (98.00%), Query Frame = 3 
Query: 1593 FVQNIADFKHHEAGLAILPDYSRQRTHDELRGNPWIAACAPLLLFCSVERMLMNADLEDQLDDKLLDIECDLRMVAEGFIGEHEEQQRHMDVMKDARQHSSCHCHRSEGVGMPPLDVLLEFLRQMCVVVKVRRHLLHAWRRVMLFGDVEF 2042
            FVQNIADFKHHEAGLAILPDYSRQRTHDELRGNPWIAACAPLLLFCSVERMLMNADLEDQLDDKLLDIECDL+MVAEGFIGEHEEQQRHMDVM DARQHSSCHCHRSEGVGMP LDVLLEFLRQM VVVKVRRHLLHAWRRVMLFGDVEF
Sbjct:   16 FVQNIADFKHHEAGLAILPDYSRQRTHDELRGNPWIAACAPLLLFCSVERMLMNADLEDQLDDKLLDIECDLKMVAEGFIGEHEEQQRHMDVMTDARQHSSCHCHRSEGVGMPSLDVLLEFLRQMGVVVKVRRHLLHAWRRVMLFGDVEF 165
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10424.407.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FGY1_ECTSI3.190e-9396.05Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JIA1_9PHAE1.510e-9297.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig10424contigEcto-sp13_S_contig10424:1233..5488 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2266
Hectar predicted targeting categoryother localisation
Exons5
Cds size657
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig10424.407.1prot_Ecto-sp13_S_contig10424.407.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig10424 2675..5321 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462530.169483-UTR-Ecto-sp13_S_contig10424:1232..26741681462530.169483-UTR-Ecto-sp13_S_contig10424:1232..2674Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig10424 1233..2674 +
1681462530.2186778-UTR-Ecto-sp13_S_contig10424:5321..54881681462530.2186778-UTR-Ecto-sp13_S_contig10424:5321..5488Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig10424 5322..5488 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462530.1782603-CDS-Ecto-sp13_S_contig10424:2674..28231681462530.1782603-CDS-Ecto-sp13_S_contig10424:2674..2823Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10424 2675..2823 +
1681462530.1864336-CDS-Ecto-sp13_S_contig10424:3605..36801681462530.1864336-CDS-Ecto-sp13_S_contig10424:3605..3680Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10424 3606..3680 +
1681462530.194484-CDS-Ecto-sp13_S_contig10424:3883..39611681462530.194484-CDS-Ecto-sp13_S_contig10424:3883..3961Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10424 3884..3961 +
1681462530.2024524-CDS-Ecto-sp13_S_contig10424:4427..45581681462530.2024524-CDS-Ecto-sp13_S_contig10424:4427..4558Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10424 4428..4558 +
1681462530.2106905-CDS-Ecto-sp13_S_contig10424:5097..53211681462530.2106905-CDS-Ecto-sp13_S_contig10424:5097..5321Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10424 5098..5321 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig10424.407.1

>prot_Ecto-sp13_S_contig10424.407.1 ID=prot_Ecto-sp13_S_contig10424.407.1|Name=mRNA_Ecto-sp13_S_contig10424.407.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=219bp
MVYTVKKSGCDWWIHGGCRRRDFLPSLALHAVRPESARYAGRALATQGYR
FVQNIADFKHHEAGLAILPDYSRQRTHDELRGNPWIAACAPLLLFCSVER
MLMNADLEDQLDDKLLDIECDLRMVAEGFIGEHEEQQRHMDVMKDARQHS
SCHCHRSEGVGMPPLDVLLEFLRQMCVVVKVRRHLLHAWRRVMLFGDVEF
GRYGMNGRGRRRQSCCTS*
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mRNA from alignment at Ecto-sp13_S_contig10424:1233..5488+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig10424.407.1 ID=mRNA_Ecto-sp13_S_contig10424.407.1|Name=mRNA_Ecto-sp13_S_contig10424.407.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4256bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10424:1233..5488+ (Ectocarpus species13 EcNAP12_S_4_19m)
AAGCAAGGGACACGGAAAGAGAGGGATATCTGCTCGCGGAAACGCGTGGG
TGATGACGTGGATGGCAGCACCGATGATGGTTGATTGCGGGGCATGCGAG
GATGACTGCTGATCGATGAGTGCAAACAAAGAGGGAGTGAGCGTGCGAGG
TGCAGAATACTGCTCCAAATGGGAGCCCTGACTGATTGAAGCACTGATTG
GGAGTGCAGAGCCCGAAAGCACTGGGTGCAGAGGGACCGAAGACAGCGGC
AACGGCCTCGGTCGATTGCACTTGAAGTGACAGGGAGAGTAAAGAACGAG
ATGGCGGACCTGGAAATGCTGGCCTGTGGTGCCCCGAGGAGGAGACCCGC
CATTCTAATTCCAAGTGAAAGAAAAAATGGCGGCCAGTGGTGCGCCGAGA
GAGGAATGAATTTCCTGCAGTTTCAAAAGAATTTTTGAATAAAGTCTATG
CGACGGCCGGAGGACAGACTACTAAACTACCGGAGTAAGAAGTTTGCTTT
TCAGGAGCCAAGGCTCACTTTCCACAAAAAGTAGGAAAATAGGGTTATCT
AACACGAGAGCTCAACCTGGGCCACACCACCATCGAAGAAACGTCTCAAT
AAGAAAACAGAGGAGCGACCCCTAAAATGCTCTACCGTTCGTAAGACAGG
AGAGGGGTTACGGGGGAGTGTGCCGAATAATTTAACTAAGAAAGATACAT
TCAAGCAAACAGCAGTTTGTCTCCCTCTCTTCCCCCTCTCTCTCCCATGC
GCTACCCGCCCCCCCAGTGACAAGTCGCAGCTGAATAAAGTTCGCTACTT
CTAGGGTGTGTGGTCTTCGCATGTGATCTGATGTACAGCCGTCGGTGGTA
AGAATCGGGGTTGAGCACGGGAGGCGAAGAAAAGCAGCGCAAATTATTAC
GTACGGTTGTTTTTGCAGCACGTTGTGTGTAAGCAAAAGCAGAGAAAATT
AAAAAACGTTTTGTGCCGATTTATGAAAATATAGCAAGCCACAGCAGCAG
TAGTATTGCTACATCCTCTGCCAGAGGGTTTTGGGAGAATGATGACCGTA
GAAGTTCGTGTGTTGGTGTGTGTTGGTGGGATGCGGAGCATGTCGCTACA
GCCGCTCTACAATAAACTTCTCCTGTAGTGCGGTGAAGATAGGTAGCCAG
AAGATATTTCCGGAAAAGAGAAAAAGTACTTCAATGCAACGGAGGAACAA
ACAACGTGTTTCATGTTTTTTTTTATCTGGGGCGGGTGTAGTTTTGCAGA
CAGCTGTGCGCACGACACCGGCCGCTAACCCCCCCGCCTTCACCTGGATC
GAAAGGGAGACGCACTTGGAGTACTTTGTCTCGTCTCATGCGGAGACTTG
GTGGCTTGGTTGTCGTGTGTGGTAGGGTGTGTGGTGTGTAAGCCAGCGCA
CACGCACAATCCACGTCAGCTGCTTGCCGAATGTATGTATGAATGGTCTA
CACTGTCAAGAAATCGGGGTGTGATTGGTGGATCCATGGTGGATGTCGGA
GACGCGACTTTCTGCCCTCGCTAGCGCTGCACGCAGTCCGCCCCGAGAGC
GCGCGGTACGCCGGGAGGGCCCTCGCAACTCAGGGCTACCGGTAGGTGCA
AGTCTCGCTTCGAGGCGATGTTTGCGGGCGGAGAAACCTCGAAAAACGGG
CTCTAGGCTCACGAGATCATTAGGATTGCATTTCCTGCGATCTCGTGAGC
CCTCAGTCCGTGGGAAATCCGTTCATAGGTCATATGTCCTATGGGGGCAA
GAGTGATTATTTTCGCGGCGCCCCCCCGCACCCCAGCCATACAGCACCGC
CGCGGGTTACGCTTCTCGCTTCTATAGTGCCACACGTCGTCGGCCGAGAC
ATGCTGTCTTCTGAACGGGGTTGAAAGCACGCCGCCTGTCTAGAGGGCTT
GAAGTTGTCCTCAGAGATCGAAACGAGCTGTGATTTGCCCTATGAAAATA
TGAACATGAGGCAATCAGCAGGACGCGACAGCCCCAAAACAGAAGGAACT
CATTTTAAGAAAATTGATGACTTCGGCTGGTCCTTCGACCCAAATATGGA
AGTGAGGCTCAACCCAATTTTGACGTTTCTTATCTCCGAGCCTGTTCTGT
ATGCGTACCACAATACATCCCCTGGTGATGGTCAACGTCCTTGCCAAGTT
CTGTGTTCTGTGTGTACGTCTGCTACAATGCTCCAGGGTGTTTGACGTGG
AGGAGCGATCGCCCCGTGTACAAGTACGAGTCTGCTGTCAGCTCTTTCCA
GATAGAGATTTTCTAGGCTGCACGCGGAGATTTACTATTGCCGTGTGAAT
CGCATATGCGGGTTCCAACTTAACCATTCATCCACCGTGGCATTGCATGG
CCGTTCTACACTTGTTTACACAGTTTTGTACAGAACATCGCGGATTTCAA
GCATCACGAAGCTGGTCTAGCGATTCTTCCCGATTACTCGCGACAGAGGT
GAGGAAGATTATGATTGCAATTGCTAGCATACGGCCGGCCGCTTCCAAGG
GGCCTGCATGCTCTTGTCGCCTCGGTGGAGATGTTGCACCAGCGTTCTGG
TTTAGTGTGGTATACCGGAGATACGTTTCGCGTAGGTGACCAGAGATCTT
ATTCACGTTCTGCAATGTCCCTGTATGTTTCTTATTTTTTGCTCCACACA
GGACGCACGACGAGTTGAGGGGCAATCCTTGGATCGCTGCCTGTGCCCCT
CTATTGCTTTTCTGTTCCGTCGAACGCATGTGAGTAGAATGCAACACCTG
TCTTTCGCACGGTCTGCAATATATATACAGATAGAAAACAACACGAGCTG
TAGTTGCACGCTTCTCTCCTGGTCACCCGCCGAAGTGTAAATCAGCCCCC
CCAAGCAGAGCAATATGCGATGCTGTCCCGCTTGCATACGTAGGATCCCG
CGAGAACGTGCCGCATTTGTGTTTCAGAAATTCGTTTTGATATAAAGGGA
CAAACCATCTGAACGCCACGATCTCGTGTCCAAGAGAACTACTGTATTTT
GCAGTTCTGGAAGACTTTTTTTCGTTAATCTTGTGCAGCTTCATATGTCG
CGAGTCATTCATTTGTAACTGAACTGTTTTGCAGGATTTCGCTGGTATTC
CTATCACAATATCGAAATTTTAAAGCGTGTCACTATCGTGCCGTTACTCG
GGTACAATGGCATGAACATAAGTTGGCGCCTGTCTCGTGTCACAGGTTGA
TGAATGCCGACCTTGAGGATCAACTGGATGACAAACTGCTTGATATAGAG
TGTGATCTGAGAATGGTCGCCGAGGGTTTCATCGGCGAACATGAGGAGCA
GCAGCGACATATGGACGTGATGAAAGGTGATTGGGTGTTGAGATTTTTCT
GAACGGTATCACCACCTCATCAGCGGTGGCACATGAAGCCACATCTATGT
CCCTGTCGCTTTTTTTGAGATTTGTGTGAACTCACAGTGGTCTCCACGGA
GGTTGAATGAACAATGGGTATTATTGATTGGTTGAAAGTCATGCAAATTG
TCTTCCTGAAGGTGCCACCAGATGCATCCGCAAGGGTGTATAACGCTACA
CAAGTGCTCGGTTTTCAGTTGGAAGGACGTGCTTACGTGCATGTCACATT
ACTTGATATTAGACATCCCGAAATTGGATTTTTCGGCCTTCAGTTTCGCA
CAGTCCACCACGCAGCCACTCCAAAGTTCCATGGGCACGTTGCGACAAGT
GCCCGCTCGCATCCAGCAACCGCAAAAATTGTCCCGGGGGAACACTGCCT
TCCCCATCAGGTACGATGAACTCTAACTTGCCATTTTAAGAGTTTCCTGC
ATGGTCATCTACCTGGCTTGCATGTAACGCAACAGCAATGCGCTCCCTTG
TCTGCATGTAAACAGATGCACGTCAGCATTCATCTTGCCACTGCCATCGC
TCAGAGGGCGTCGGCATGCCTCCCTTGGACGTGTTGCTCGAGTTTCTGAG
ACAAATGTGTGTTGTCGTGAAAGTCCGGCGACACTTGCTGCATGCATGGA
GGCGTGTGATGCTGTTCGGTGATGTTGAGTTTGGAAGGTACGGGATGAAT
GGCCGAGGGCGGCGGCGGCAATCATGTTGTACTTCATAGCTTGCCGAGCT
AGTCGTGACTCGCTTGCCTGTGCGGTGTTCACACGGTATCAAACTTGCCT
GTGCGTCCTGGTGTCTTGGAAAATTGTTAACCCTTACGTGACTACAGGCC
GATTCAGCTCCGTTCTCAGCTCCGGTCACTTTGCGTGCCGAAAGATCGCC
GTTGTG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10424:1233..5488+

>mRNA_Ecto-sp13_S_contig10424.407.1 ID=mRNA_Ecto-sp13_S_contig10424.407.1|Name=mRNA_Ecto-sp13_S_contig10424.407.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=657bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10424:1233..5488+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTCTACACTGTCAAGAAATCGGGGTGTGATTGGTGGATCCATGGTGG
ATGTCGGAGACGCGACTTTCTGCCCTCGCTAGCGCTGCACGCAGTCCGCC
CCGAGAGCGCGCGGTACGCCGGGAGGGCCCTCGCAACTCAGGGCTACCGT
TTTGTACAGAACATCGCGGATTTCAAGCATCACGAAGCTGGTCTAGCGAT
TCTTCCCGATTACTCGCGACAGAGGACGCACGACGAGTTGAGGGGCAATC
CTTGGATCGCTGCCTGTGCCCCTCTATTGCTTTTCTGTTCCGTCGAACGC
ATGTTGATGAATGCCGACCTTGAGGATCAACTGGATGACAAACTGCTTGA
TATAGAGTGTGATCTGAGAATGGTCGCCGAGGGTTTCATCGGCGAACATG
AGGAGCAGCAGCGACATATGGACGTGATGAAAGATGCACGTCAGCATTCA
TCTTGCCACTGCCATCGCTCAGAGGGCGTCGGCATGCCTCCCTTGGACGT
GTTGCTCGAGTTTCTGAGACAAATGTGTGTTGTCGTGAAAGTCCGGCGAC
ACTTGCTGCATGCATGGAGGCGTGTGATGCTGTTCGGTGATGTTGAGTTT
GGAAGGTACGGGATGAATGGCCGAGGGCGGCGGCGGCAATCATGTTGTAC
TTCATAG
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