mRNA_Ecto-sp13_S_contig15406.4050.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig15406.4050.1
Unique NamemRNA_Ecto-sp13_S_contig15406.4050.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig15406.4050.1 vs. uniprot
Match: D8LCJ2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LCJ2_ECTSI)

HSP 1 Score: 86.7 bits (213), Expect = 1.860e-16
Identity = 49/55 (89.09%), Postives = 50/55 (90.91%), Query Frame = 1 
Query:  112 MKRKAESPALVPSASSVVGSPANADRTANTAATAPDAASTGRGHKPQPKREEPGS 276
            MKRKAESPALVPSASSVVGSPANADRTANT AT PDAASTGRGHK QP + EPGS
Sbjct:    1 MKRKAESPALVPSASSVVGSPANADRTANTPATDPDAASTGRGHKQQPTQVEPGS 55
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15406.4050.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LCJ2_ECTSI1.860e-1689.09Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15406contigEcto-sp13_S_contig15406:3342..3902 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score88.2
Seed ortholog evalue4.4e-15
Seed eggNOG ortholog2880.D8LCJ2
Preferred nameC9orf114
Model size563
KEGG koko:K09142
Hectar predicted targeting categoryother localisation
GOsGO:0000070,GO:0000278,GO:0000280,GO:0000775,GO:0000776,GO:0000819,GO:0000922,GO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0005730,GO:0005813,GO:0005815,GO:0005819,GO:0005856,GO:0006139,GO:0006396,GO:0006725,GO:0006807,GO:0006996,GO:0007049,GO:0007059,GO:0008150,GO:0008152,GO:0008168,GO:0009892,GO:0009987,GO:0010033,GO:0010467,GO:0010468,GO:0010605,GO:0010608,GO:0010629,GO:0014070,GO:0015630,GO:0016043,GO:0016070,GO:0016441,GO:0016458,GO:0016740,GO:0016741,GO:0019222,GO:0022402,GO:0031047,GO:0031050,GO:0031616,GO:0031974,GO:0031981,GO:0032259,GO:0032991,GO:0034641,GO:0035194,GO:0035195,GO:0035196,GO:0035198,GO:0040029,GO:0042221,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043331,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044430,GO:0044446,GO:0044464,GO:0046483,GO:0048285,GO:0048519,GO:0050789,GO:0050896,GO:0051179,GO:0051235,GO:0051276,GO:0051640,GO:0051641,GO:0051642,GO:0051651,GO:0051657,GO:0051661,GO:0051716,GO:0060255,GO:0061842,GO:0061980,GO:0065007,GO:0065008,GO:0070013,GO:0070887,GO:0070918,GO:0071310,GO:0071359,GO:0071407,GO:0071704,GO:0071840,GO:0072686,GO:0090304,GO:0097159,GO:0098687,GO:0098813,GO:0140014,GO:1901360,GO:1901363,GO:1901698,GO:1901699,GO:1903047
Exons1
EggNOG free text desc.SPOUT domain containing methyltransferase 1
EggNOG OGsCOG2106@1,KOG3925@2759
Ec32 ortholog descriptionPutative RNA methyltransferase
Ec32 orthologEc-03_002720.1
Cds size561
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462818.8124704-CDS-Ecto-sp13_S_contig15406:3341..39021681462818.8124704-CDS-Ecto-sp13_S_contig15406:3341..3902Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15406 3342..3902 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15406.4050.1prot_Ecto-sp13_S_contig15406.4050.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig15406 3342..3902 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig15406.4050.1

>prot_Ecto-sp13_S_contig15406.4050.1 ID=prot_Ecto-sp13_S_contig15406.4050.1|Name=mRNA_Ecto-sp13_S_contig15406.4050.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=187bp
SISLHPLLQTADSGGVVLHSPRTLSLCARGGSCEKSIMKRKAESPALVPS
ASSVVGSPANADRTANTAATAPDAASTGRGHKPQPKREEPGSCGGGGFIP
VDRSSDGESSSKKNKKKKKKRKKMKLEGEGLETSSTATPAAAATEAPRVA
APAAVAAASGEEKSSRGALSEAAGATALAGENTQVI*
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mRNA from alignment at Ecto-sp13_S_contig15406:3342..3902+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig15406.4050.1 ID=mRNA_Ecto-sp13_S_contig15406.4050.1|Name=mRNA_Ecto-sp13_S_contig15406.4050.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=561bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15406:3342..3902+ (Ectocarpus species13 EcNAP12_S_4_19m)
TCCATCTCGCTACACCCGCTGCTACAGACAGCTGACAGCGGTGGTGTGGT
GTTGCATTCCCCACGTACCCTGTCTCTCTGTGCTCGTGGTGGGTCGTGTG
AGAAATCGATCATGAAGAGGAAGGCCGAGTCGCCGGCCCTTGTACCTTCT
GCATCGAGCGTCGTGGGCTCGCCGGCCAATGCCGACCGTACAGCAAATAC
CGCTGCCACCGCCCCCGACGCTGCTAGCACTGGCCGCGGCCACAAGCCGC
AGCCCAAACGAGAGGAGCCAGGAAGCTGCGGTGGCGGTGGCTTCATCCCG
GTGGACCGCAGCAGCGATGGTGAGAGCAGCAGCAAGAAGAACAAGAAGAA
GAAAAAGAAGAGGAAGAAGATGAAGCTCGAGGGCGAGGGATTGGAGACGT
CAAGTACGGCGACCCCAGCAGCTGCGGCGACGGAGGCGCCAAGAGTAGCA
GCACCAGCAGCAGTGGCTGCTGCTTCCGGGGAGGAAAAATCATCTCGTGG
AGCGCTGTCAGAAGCTGCTGGCGCTACGGCGTTAGCTGGGGAAAACACGC
AGGTAATTTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15406:3342..3902+

>mRNA_Ecto-sp13_S_contig15406.4050.1 ID=mRNA_Ecto-sp13_S_contig15406.4050.1|Name=mRNA_Ecto-sp13_S_contig15406.4050.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=561bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15406:3342..3902+ (Ectocarpus species13 EcNAP12_S_4_19m)
TCCATCTCGCTACACCCGCTGCTACAGACAGCTGACAGCGGTGGTGTGGT
GTTGCATTCCCCACGTACCCTGTCTCTCTGTGCTCGTGGTGGGTCGTGTG
AGAAATCGATCATGAAGAGGAAGGCCGAGTCGCCGGCCCTTGTACCTTCT
GCATCGAGCGTCGTGGGCTCGCCGGCCAATGCCGACCGTACAGCAAATAC
CGCTGCCACCGCCCCCGACGCTGCTAGCACTGGCCGCGGCCACAAGCCGC
AGCCCAAACGAGAGGAGCCAGGAAGCTGCGGTGGCGGTGGCTTCATCCCG
GTGGACCGCAGCAGCGATGGTGAGAGCAGCAGCAAGAAGAACAAGAAGAA
GAAAAAGAAGAGGAAGAAGATGAAGCTCGAGGGCGAGGGATTGGAGACGT
CAAGTACGGCGACCCCAGCAGCTGCGGCGACGGAGGCGCCAAGAGTAGCA
GCACCAGCAGCAGTGGCTGCTGCTTCCGGGGAGGAAAAATCATCTCGTGG
AGCGCTGTCAGAAGCTGCTGGCGCTACGGCGTTAGCTGGGGAAAACACGC
AGGTAATTTGA
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