mRNA_Ecto-sp13_S_contig15391.4040.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig15391.4040.1
Unique NamemRNA_Ecto-sp13_S_contig15391.4040.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig15391.4040.1 vs. uniprot
Match: D7FR81_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FR81_ECTSI)

HSP 1 Score: 126 bits (316), Expect = 2.560e-32
Identity = 60/61 (98.36%), Postives = 61/61 (100.00%), Query Frame = 1 
Query:    1 VRTMKANYKIEAGDVRVIRPLCYAREALTKDFARTNRLPLVNENCPACFEEPKERHRVKKV 183
            VRTMKANYKIEAGDVRVIRPLCYAREALTKDFARTNRLPLVNENCPACFEEPKERHRVKK+
Sbjct: 1019 VRTMKANYKIEAGDVRVIRPLCYAREALTKDFARTNRLPLVNENCPACFEEPKERHRVKKM 1079
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BLAST of mRNA_Ecto-sp13_S_contig15391.4040.1 vs. uniprot
Match: A0A7S2WSQ3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WSQ3_9STRA)

HSP 1 Score: 103 bits (256), Expect = 3.260e-24
Identity = 47/61 (77.05%), Postives = 55/61 (90.16%), Query Frame = 1 
Query:    1 VRTMKANYKIEAGDVRVIRPLCYAREALTKDFARTNRLPLVNENCPACFEEPKERHRVKKV 183
            VRTMKANYKIEAGDV VIRPL Y RE  TK+FA++ +LP++NENCPACFE+PKERHRVKK+
Sbjct:  809 VRTMKANYKIEAGDVSVIRPLAYVREHQTKEFAKSAQLPIINENCPACFEQPKERHRVKKM 869
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BLAST of mRNA_Ecto-sp13_S_contig15391.4040.1 vs. uniprot
Match: A0A7S3MGR1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3MGR1_9STRA)

HSP 1 Score: 102 bits (253), Expect = 8.310e-24
Identity = 45/61 (73.77%), Postives = 56/61 (91.80%), Query Frame = 1 
Query:    1 VRTMKANYKIEAGDVRVIRPLCYAREALTKDFARTNRLPLVNENCPACFEEPKERHRVKKV 183
            VRTMKANYKIEAGDVRVIRPL Y RE +T+DF++ ++LP++NENCPACFE+PKER R+KK+
Sbjct:  985 VRTMKANYKIEAGDVRVIRPLIYVREHMTRDFSQASKLPIINENCPACFEQPKERDRMKKL 1045
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BLAST of mRNA_Ecto-sp13_S_contig15391.4040.1 vs. uniprot
Match: B8BUL4_THAPS (ATP_bind_3 domain-containing protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BUL4_THAPS)

HSP 1 Score: 100 bits (249), Expect = 2.150e-23
Identity = 46/61 (75.41%), Postives = 53/61 (86.89%), Query Frame = 1 
Query:    1 VRTMKANYKIEAGDVRVIRPLCYAREALTKDFARTNRLPLVNENCPACFEEPKERHRVKKV 183
            VRTMKANYKI AGDV VIRPL Y RE+L  DFA++N LP++NENCPACFEEPKER R+KK+
Sbjct:  285 VRTMKANYKINAGDVSVIRPLVYCRESLMTDFAKSNNLPVINENCPACFEEPKERARIKKL 345
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BLAST of mRNA_Ecto-sp13_S_contig15391.4040.1 vs. uniprot
Match: A0A7S2CJN7_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CJN7_9STRA)

HSP 1 Score: 99.4 bits (246), Expect = 6.670e-23
Identity = 47/61 (77.05%), Postives = 53/61 (86.89%), Query Frame = 1 
Query:    1 VRTMKANYKIEAGDVRVIRPLCYAREALTKDFARTNRLPLVNENCPACFEEPKERHRVKKV 183
            VRTMKA+YKIEAGDV VIRPL Y RE  TK FA T +LP++NENCPACFE+PKERHRVKK+
Sbjct:  366 VRTMKAHYKIEAGDVSVIRPLAYVREHETKAFALTAKLPVINENCPACFEDPKERHRVKKM 426
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BLAST of mRNA_Ecto-sp13_S_contig15391.4040.1 vs. uniprot
Match: A0A7S3XUF4_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XUF4_HETAK)

HSP 1 Score: 95.1 bits (235), Expect = 3.400e-22
Identity = 42/61 (68.85%), Postives = 53/61 (86.89%), Query Frame = 1 
Query:    1 VRTMKANYKIEAGDVRVIRPLCYAREALTKDFARTNRLPLVNENCPACFEEPKERHRVKKV 183
            +RTMKA+Y+++ GD+ VIRPLCY REA TK FAR  RLP++NENCPACFE+PKER RVK++
Sbjct:  212 LRTMKAHYRVDKGDLSVIRPLCYTREAATKAFARQARLPVINENCPACFEQPKERARVKQM 272
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BLAST of mRNA_Ecto-sp13_S_contig15391.4040.1 vs. uniprot
Match: A0A7S2M238_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2M238_9STRA)

HSP 1 Score: 95.9 bits (237), Expect = 1.150e-21
Identity = 44/61 (72.13%), Postives = 51/61 (83.61%), Query Frame = 1 
Query:    1 VRTMKANYKIEAGDVRVIRPLCYAREALTKDFARTNRLPLVNENCPACFEEPKERHRVKKV 183
            +RTMKANY+I AGDV VIRPL Y RE L  +FA+ N LP++NENCPACFEEPKER RVKK+
Sbjct:  358 IRTMKANYQINAGDVSVIRPLVYCRENLMTEFAKANNLPVINENCPACFEEPKERARVKKL 418
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BLAST of mRNA_Ecto-sp13_S_contig15391.4040.1 vs. uniprot
Match: A0A7S2ERJ2_9STRA (Hypothetical protein n=4 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S2ERJ2_9STRA)

HSP 1 Score: 95.5 bits (236), Expect = 1.660e-21
Identity = 43/61 (70.49%), Postives = 52/61 (85.25%), Query Frame = 1 
Query:    1 VRTMKANYKIEAGDVRVIRPLCYAREALTKDFARTNRLPLVNENCPACFEEPKERHRVKKV 183
            +RTMKANY+I AGD+ VIRPL Y RE+L  DFA++  LP++NENCPACFEEPKER RVKK+
Sbjct: 1278 IRTMKANYQINAGDISVIRPLVYCRESLMTDFAKSANLPVINENCPACFEEPKERARVKKL 1338
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BLAST of mRNA_Ecto-sp13_S_contig15391.4040.1 vs. uniprot
Match: A0A7S4EF81_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4EF81_9STRA)

HSP 1 Score: 93.6 bits (231), Expect = 7.670e-21
Identity = 42/61 (68.85%), Postives = 52/61 (85.25%), Query Frame = 1 
Query:    1 VRTMKANYKIEAGDVRVIRPLCYAREALTKDFARTNRLPLVNENCPACFEEPKERHRVKKV 183
            +RTMKANYKI AGD+ VIRPL Y RE+L  +FA++  LP++NENCPACFEEPKER R+KK+
Sbjct:  394 LRTMKANYKINAGDLSVIRPLAYCRESLMTEFAKSANLPIINENCPACFEEPKERARMKKL 454
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BLAST of mRNA_Ecto-sp13_S_contig15391.4040.1 vs. uniprot
Match: A0A7S4ABA3_9STRA (Hypothetical protein n=2 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4ABA3_9STRA)

HSP 1 Score: 93.6 bits (231), Expect = 7.850e-21
Identity = 42/61 (68.85%), Postives = 52/61 (85.25%), Query Frame = 1 
Query:    1 VRTMKANYKIEAGDVRVIRPLCYAREALTKDFARTNRLPLVNENCPACFEEPKERHRVKKV 183
            +RTMKANYKI AGD+ VIRPL Y RE+L  +FA++  LP++NENCPACFEEPKER R+KK+
Sbjct: 1086 LRTMKANYKINAGDLSVIRPLAYCRESLMTEFAKSANLPIINENCPACFEEPKERARMKKL 1146
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15391.4040.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FR81_ECTSI2.560e-3298.36Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2WSQ3_9STRA3.260e-2477.05Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A7S3MGR1_9STRA8.310e-2473.77Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
B8BUL4_THAPS2.150e-2375.41ATP_bind_3 domain-containing protein n=1 Tax=Thala... [more]
A0A7S2CJN7_9STRA6.670e-2377.05Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S3XUF4_HETAK3.400e-2268.85Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S2M238_9STRA1.150e-2172.13Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]
A0A7S2ERJ2_9STRA1.660e-2170.49Hypothetical protein n=4 Tax=Ditylum brightwellii ... [more]
A0A7S4EF81_9STRA7.670e-2168.85Hypothetical protein n=1 Tax=Pseudo-nitzschia aust... [more]
A0A7S4ABA3_9STRA7.850e-2168.85Hypothetical protein n=2 Tax=Pseudo-nitzschia aust... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15391contigEcto-sp13_S_contig15391:3919..4101 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score122.9
Seed ortholog evalue5e-26
Seed eggNOG ortholog2880.D7FR81
Model size183
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
EggNOG free text desc.tRNA thio-modification
EggNOG OGsCOG0037@1,KOG2840@2759
Cds size174
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462818.3061726-UTR-Ecto-sp13_S_contig15391:3918..39271681462818.3061726-UTR-Ecto-sp13_S_contig15391:3918..3927Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig15391 3919..3927 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462818.3161242-CDS-Ecto-sp13_S_contig15391:3927..41011681462818.3161242-CDS-Ecto-sp13_S_contig15391:3927..4101Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15391 3928..4101 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15391.4040.1prot_Ecto-sp13_S_contig15391.4040.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig15391 3928..4101 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig15391.4040.1

>prot_Ecto-sp13_S_contig15391.4040.1 ID=prot_Ecto-sp13_S_contig15391.4040.1|Name=mRNA_Ecto-sp13_S_contig15391.4040.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=58bp
MKANYKIEAGDVRVIRPLCYAREALTKDFARTNRLPLVNENCPACFEEPK
ERHRVKKV
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mRNA from alignment at Ecto-sp13_S_contig15391:3919..4101+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig15391.4040.1 ID=mRNA_Ecto-sp13_S_contig15391.4040.1|Name=mRNA_Ecto-sp13_S_contig15391.4040.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=183bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15391:3919..4101+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTCCGCACCATGAAGGCCAACTACAAGATCGAGGCCGGCGACGTCCGGGT
GATCCGCCCCCTGTGCTACGCGAGAGAGGCGCTGACGAAGGACTTCGCGA
GGACCAACCGCCTTCCCCTGGTTAACGAGAACTGCCCGGCCTGCTTCGAG
GAGCCCAAAGAGCGGCACCGTGTCAAGAAGGTG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15391:3919..4101+

>mRNA_Ecto-sp13_S_contig15391.4040.1 ID=mRNA_Ecto-sp13_S_contig15391.4040.1|Name=mRNA_Ecto-sp13_S_contig15391.4040.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=174bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15391:3919..4101+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAAGGCCAACTACAAGATCGAGGCCGGCGACGTCCGGGTGATCCGCCC
CCTGTGCTACGCGAGAGAGGCGCTGACGAAGGACTTCGCGAGGACCAACC
GCCTTCCCCTGGTTAACGAGAACTGCCCGGCCTGCTTCGAGGAGCCCAAA
GAGCGGCACCGTGTCAAGAAGGTG
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