prot_Ecto-sp13_S_contig153.3984.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig153.3984.1
Unique Nameprot_Ecto-sp13_S_contig153.3984.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length325
Homology
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BLAST of mRNA_Ecto-sp13_S_contig153.3984.1 vs. uniprot
Match: D7FYV1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYV1_ECTSI)

HSP 1 Score: 546 bits (1408), Expect = 2.910e-193
Identity = 289/326 (88.65%), Postives = 297/326 (91.10%), Query Frame = 0 
Query:    1 MQSARTSKAWWRNVSALPAAAHVDLTTFRPRSPIYRTSLWGGPSIARPRSLKWNDVLIHLRHIKNTNPRRAVRRLTFNSSTKLGSLSNLSSATTGLLTHIDFSRSRREVDFDQLGVQLPGLRGLAVQSLSYYTAARDQAWTKSLAKLISTVSLESLRLRHTSLDDSSLAVLAGVGDSLLRCTFSGGSADIEEGMAVLGAAAPRLETLAVHHVRVTNIGWEKFGKARLTSKRHLVFVHITPASDAHVPSKATRAVLLRAVTKSLVFSMGGRTSSGGSSNSSS--DASASQPVLIDCEGSKVGAAEAPGKLQFDSASNFWGSWKATDL 324
            MQSARTSKAWWRN     AAAHVDLT  RPRSPIY TSLWGGPS+ARPR LKWND+LIHLRHIKNTNPRRAVRRLTFNSSTKLGSLSNLSSATTGLLTHIDFSRSRR+VDFDQLGVQLPGLRGLAVQSLSYYTAARDQAWTKSLAKLISTVSLESLRLRHT LDDSSLAVLAG GDSLLRCTFSGGSA IEEGMAVLGAAAPRLETLAVHHVRVTN GWEKFGKARL SKRHL+ VHITPAS AHVPSKATRAVLLRAVTKSLVFS+GGR+S           DA ASQPVLIDC+GSKVG AEAPGKLQFDSASN+WGSWKATDL
Sbjct:  106 MQSARTSKAWWRN-----AAAHVDLTNLRPRSPIYGTSLWGGPSVARPRGLKWNDILIHLRHIKNTNPRRAVRRLTFNSSTKLGSLSNLSSATTGLLTHIDFSRSRRDVDFDQLGVQLPGLRGLAVQSLSYYTAARDQAWTKSLAKLISTVSLESLRLRHTGLDDSSLAVLAGAGDSLLRCTFSGGSAIIEEGMAVLGAAAPRLETLAVHHVRVTNSGWEKFGKARLASKRHLISVHITPASAAHVPSKATRAVLLRAVTKSLVFSLGGRSSXXXXXXXXXXXDAPASQPVLIDCKGSKVGVAEAPGKLQFDSASNYWGSWKATDL 426
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BLAST of mRNA_Ecto-sp13_S_contig153.3984.1 vs. uniprot
Match: D8LTA9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTA9_ECTSI)

HSP 1 Score: 77.0 bits (188), Expect = 6.470e-13
Identity = 50/128 (39.06%), Postives = 69/128 (53.91%), Query Frame = 0 
Query:    1 MQSARTSKAWWRNVSALPAAAHVDLTTFRPRSPIYRTSLWGGPSIARPRSLKWNDVLIHLRHIKNTNPRRAVRRLTFNSSTKLGSLSNLSSATTGL-LTHIDFSRS--RREVDFDQLGVQLPGLRGLA 125
            ++S  +SK+WWR +S LP A+H+D T    R P                   W +++  L+ IK +NP RAV R+T    TKLGS  NL     G+ LTH+D +RS   +++DF  L   LP LRGLA
Sbjct:   84 VRSTPSSKSWWRTISGLPPASHID-TNIGKRLP-------------------WGELVTQLKTIKASNPLRAVARVTLGCRTKLGSFHNLGKVVGGVGLTHLDLTRSWGAKKLDFAALAKALPTLRGLA 191
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig153.3984.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FYV1_ECTSI2.910e-19388.65Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LTA9_ECTSI6.470e-1339.06Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 1..258
e-value: 2.5E-9
score: 38.5
NoneNo IPR availableSUPERFAMILY52047RNI-likecoord: 85..237

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig153contigEcto-sp13_S_contig153:29149..30685 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig153.3984.1mRNA_Ecto-sp13_S_contig153.3984.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig153 27632..31285 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig153.3984.1 ID=prot_Ecto-sp13_S_contig153.3984.1|Name=mRNA_Ecto-sp13_S_contig153.3984.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=325bp
MQSARTSKAWWRNVSALPAAAHVDLTTFRPRSPIYRTSLWGGPSIARPRS
LKWNDVLIHLRHIKNTNPRRAVRRLTFNSSTKLGSLSNLSSATTGLLTHI
DFSRSRREVDFDQLGVQLPGLRGLAVQSLSYYTAARDQAWTKSLAKLIST
VSLESLRLRHTSLDDSSLAVLAGVGDSLLRCTFSGGSADIEEGMAVLGAA
APRLETLAVHHVRVTNIGWEKFGKARLTSKRHLVFVHITPASDAHVPSKA
TRAVLLRAVTKSLVFSMGGRTSSGGSSNSSSDASASQPVLIDCEGSKVGA
AEAPGKLQFDSASNFWGSWKATDL*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR032675LRR_dom_sf