mRNA_Ecto-sp13_S_contig15223.3935.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig15223.3935.1
Unique NamemRNA_Ecto-sp13_S_contig15223.3935.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig15223.3935.1 vs. uniprot
Match: A0A6H5L8D4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8D4_9PHAE)

HSP 1 Score: 91.3 bits (225), Expect = 3.620e-19
Identity = 51/82 (62.20%), Postives = 51/82 (62.20%), Query Frame = 1 
Query:   70 MRHSVPVLGTGAGPDVFTFNSIMHGMASAGECERLLVLLAEMREEYGVSPDVVSYNTAMAAFNEARQHLRALSTFEDMQAAG 315
            MR SVPVLGTGAG                             REEYGVSPDVVSYNTAMAA NEARQHLRALSTFEDMQAAG
Sbjct:  278 MRRSVPVLGTGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXREEYGVSPDVVSYNTAMAACNEARQHLRALSTFEDMQAAG 359
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BLAST of mRNA_Ecto-sp13_S_contig15223.3935.1 vs. uniprot
Match: A0A6T6SDA8_9EUKA (Hypothetical protein n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A6T6SDA8_9EUKA)

HSP 1 Score: 67.0 bits (162), Expect = 1.160e-10
Identity = 42/111 (37.84%), Postives = 62/111 (55.86%), Query Frame = 1 
Query:    1 YNAAINACAQSGEWETALSLADEMRHSVPVLGTGAGPDVFTFNSIMHGMASAGECERLLVLLAEMREEYGVSPDVVSYNTAMAAFNEARQHLR-ALSTFEDMQAAGVSPDT 330
            Y   I+AC + G+WE A+S+ D MR      G    PDV  +N+ M+  A++G  E+ + L  +M     V PDVVS+NT +AA    ++HL  AL  F+ M+   V P+T
Sbjct:   18 YTDMISACVKCGKWEVAVSVFDCMRRR----GGKISPDVVAYNAAMNAYANSGIPEKSINLFVDMVSSK-VKPDVVSFNTVIAACIGGQEHLNMALEVFQAMRDVRVHPNT 123
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BLAST of mRNA_Ecto-sp13_S_contig15223.3935.1 vs. uniprot
Match: A0A2G5C9H9_AQUCA (Uncharacterized protein n=2 Tax=Thalictroideae TaxID=1463137 RepID=A0A2G5C9H9_AQUCA)

HSP 1 Score: 56.2 bits (134), Expect = 7.010e-7
Identity = 33/106 (31.13%), Postives = 59/106 (55.66%), Query Frame = 1 
Query:    7 AAINACAQSGEWETALSLADEMRHSVPVLGTGAGPDVFTFNSIMHGMASAGECERLLVLLAEMREEYGVSPDVVSYNTAMAAFNEARQHLRALSTFEDMQAAGVSP 324
            A ++  ++ G WE A  + +E+             ++FT+NS++ GM S G+CE  + L  ++  E  ++PD VS+N  ++ F+   + + A S F+ MQ AGV+P
Sbjct:  275 ALVDMYSKCGSWELAYKIFNELE---------GYRNLFTWNSMISGMFSNGQCESAVQLFEQIESEE-MAPDSVSWNAMISGFSLWDKGVEAFSYFKKMQLAGVTP 370
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BLAST of mRNA_Ecto-sp13_S_contig15223.3935.1 vs. uniprot
Match: A0A1Y1IE79_KLENI (Putative Pentatricopeptide repeat domain containing protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IE79_KLENI)

HSP 1 Score: 53.1 bits (126), Expect = 8.590e-6
Identity = 29/104 (27.88%), Postives = 52/104 (50.00%), Query Frame = 1 
Query:   28 QSGEWETALSLADEMRHSVPVLGTGAGPDVFTFNSIMHGMASAGE---CERLLVLLAEMREEYGVSPDVVSYNTAMAAFNEARQHLRALSTFEDMQAAGVSPDT 330
            QS  +  +  + +EMR  VP       PDV  FN+++  +  +     CE++ + ++     +GV PD+VSYNT M+ +     + +  +    MQ A + PD+
Sbjct:  322 QSSAFWRSFEMLEEMRRHVP-----GRPDVRDFNNLLGNLLRSRRPIPCEKVFLKMSISEGNFGVEPDIVSYNTLMSCYAREGHYRKVEALLVQMQRAHIEPDS 420
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BLAST of mRNA_Ecto-sp13_S_contig15223.3935.1 vs. uniprot
Match: D7FXC1_ECTSI (PPR_long domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXC1_ECTSI)

HSP 1 Score: 52.0 bits (123), Expect = 1.980e-5
Identity = 31/64 (48.44%), Postives = 31/64 (48.44%), Query Frame = 1 
Query:   70 MRHSVPVLGTGAGPDVFTFNSIMHGMASAGECERLLVLLAEMREEYGVSPDVVSYNTAMAAFNE 261
            MR SVPVLGTGAG                              EEY VSPDVVSYNTAMAA NE
Sbjct:  271 MRRSVPVLGTGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEEYEVSPDVVSYNTAMAACNE 334
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BLAST of mRNA_Ecto-sp13_S_contig15223.3935.1 vs. uniprot
Match: UPI00053C9E9B (pentatricopeptide repeat-containing protein At4g01570 n=1 Tax=Tarenaya hassleriana TaxID=28532 RepID=UPI00053C9E9B)

HSP 1 Score: 51.6 bits (122), Expect = 2.990e-5
Identity = 27/66 (40.91%), Postives = 40/66 (60.61%), Query Frame = 1 
Query:    1 YNAAINACAQSGEWETALSLADEMRHSVPVLGTGAGPDVFTFNSIMHGMASAGECERLLVLLAEMR 198
            YN  I A    G+ +TALSL  EM+    V GT AGPDV T+NS++H +   G+ +  L++  E++
Sbjct:  249 YNICIYAFGCWGDLDTALSLFREMKEQGSVSGTSAGPDVCTYNSLLHVLCLLGKVKDALIVWDELK 314
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BLAST of mRNA_Ecto-sp13_S_contig15223.3935.1 vs. uniprot
Match: A6RAM3_AJECN (Uncharacterized protein n=7 Tax=Histoplasma TaxID=5036 RepID=A6RAM3_AJECN)

HSP 1 Score: 50.8 bits (120), Expect = 5.730e-5
Identity = 25/68 (36.76%), Postives = 40/68 (58.82%), Query Frame = 1 
Query:  127 NSIMHGMASAGECERLLVLLAEMREEYGVSPDVVSYNTAMAAFNEARQHLRALSTFEDMQAAGVSPDT 330
            N +++  A+ G   +    L  +R E+ +SPDV S+N  + A  +AR    ALSTF++M A G+ PD+
Sbjct:  486 NPLIYVNAAVGRVYQARKQLERLRSEFSLSPDVTSWNIVLTAHAKARDKPGALSTFQEMIATGLKPDS 553
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15223.3935.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A6H5L8D4_9PHAE3.620e-1962.20Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6T6SDA8_9EUKA1.160e-1037.84Hypothetical protein n=1 Tax=Amorphochlora amoebif... [more]
A0A2G5C9H9_AQUCA7.010e-731.13Uncharacterized protein n=2 Tax=Thalictroideae Tax... [more]
A0A1Y1IE79_KLENI8.590e-627.88Putative Pentatricopeptide repeat domain containin... [more]
D7FXC1_ECTSI1.980e-548.44PPR_long domain-containing protein n=1 Tax=Ectocar... [more]
UPI00053C9E9B2.990e-540.91pentatricopeptide repeat-containing protein At4g01... [more]
A6RAM3_AJECN5.730e-536.76Uncharacterized protein n=7 Tax=Histoplasma TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15223contigEcto-sp13_S_contig15223:2862..3689 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeViridiplantae
Stop0
Start0
Seed ortholog score62.0
Seed ortholog evalue2e-07
Seed eggNOG ortholog42345.XP_008807521.1
Model size330
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.Pentacotripeptide-repeat region of PRORP
EggNOG OGs37SZU@33090,3GGUZ@35493,3KQ87@4447,KOG4197@1,KOG4197@2759
Cds size330
COG Functional cat.S
Best tax levelLiliopsida
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462810.1831698-CDS-Ecto-sp13_S_contig15223:2861..31221681462810.1831698-CDS-Ecto-sp13_S_contig15223:2861..3122Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15223 2862..3122 +
1681462810.1942067-CDS-Ecto-sp13_S_contig15223:3620..36891681462810.1942067-CDS-Ecto-sp13_S_contig15223:3620..3689Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15223 3621..3689 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15223.3935.1prot_Ecto-sp13_S_contig15223.3935.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig15223 2862..3689 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig15223.3935.1

>prot_Ecto-sp13_S_contig15223.3935.1 ID=prot_Ecto-sp13_S_contig15223.3935.1|Name=mRNA_Ecto-sp13_S_contig15223.3935.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=110bp
YNAAINACAQSGEWETALSLADEMRHSVPVLGTGAGPDVFTFNSIMHGMA
SAGECERLLVLLAEMREEYGVSPDVVSYNTAMAAFNEARQHLRALSTFED
MQAAGVSPDT
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mRNA from alignment at Ecto-sp13_S_contig15223:2862..3689+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig15223.3935.1 ID=mRNA_Ecto-sp13_S_contig15223.3935.1|Name=mRNA_Ecto-sp13_S_contig15223.3935.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=828bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15223:2862..3689+ (Ectocarpus species13 EcNAP12_S_4_19m)
TACAACGCGGCGATAAACGCGTGCGCCCAGAGCGGCGAGTGGGAGACGGC
CTTGTCCCTCGCGGACGAGATGCGCCACTCGGTACCGGTCCTCGGAACGG
GCGCCGGTCCCGACGTCTTCACTTTCAACTCTATCATGCACGGCATGGCG
AGCGCGGGGGAGTGCGAACGGCTACTGGTGTTGCTGGCCGAGATGCGGGA
GGAGTACGGGGTGTCCCCGGACGTGGTCTCGTACAACACGGCCATGGCCG
CGTTCAATGAGGTGAGCTCTCGGCGTATGATGAGACCGGTTTCCTCGTGG
AACGAGGTGGTTTTTCAGCCTGTAAGGAGGTGGGTTTTCAGCGTGCAATG
AGGTCAGATTTTGCGTGAACGGAGGTGGGGATCCGCGTACGATATAGGAG
AAGGTTTGGCAAGCCGAAATAGTGTTTTTCATCCTTAGACCGTCACGTGT
GATGAGTGTGTTTCTCGTGGCTGTGACAAGCGGTTTTGATTTCTTGCATC
GATTCTCATTTTATCGACCCGGCGTGACTCTCTCGCATCTTTTTGTCGCA
GCCGACACTGCTGTTTGCACAGCATCGCTTTACCGGCGAACCGACATATT
TCGCCCATGAAGCGCTGCGGCAACCTTTCGTTGCGCGTCCCCCCCCTCCC
AAAGGTTCCTGGTTCATGGTTGTAAAACGTAGCTTGGAGAGATGTGAGGT
CTATGATCCACCGACTACGGCATGCGTTTACACGAGTACCCCCCCTCCCC
CCCCCTCAGGCACGCCAACACCTGCGGGCCCTCTCGACCTTCGAGGACAT
GCAAGCCGCGGGCGTCTCACCGGACACG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15223:2862..3689+

>mRNA_Ecto-sp13_S_contig15223.3935.1 ID=mRNA_Ecto-sp13_S_contig15223.3935.1|Name=mRNA_Ecto-sp13_S_contig15223.3935.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=330bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15223:2862..3689+ (Ectocarpus species13 EcNAP12_S_4_19m)
TACAACGCGGCGATAAACGCGTGCGCCCAGAGCGGCGAGTGGGAGACGGC
CTTGTCCCTCGCGGACGAGATGCGCCACTCGGTACCGGTCCTCGGAACGG
GCGCCGGTCCCGACGTCTTCACTTTCAACTCTATCATGCACGGCATGGCG
AGCGCGGGGGAGTGCGAACGGCTACTGGTGTTGCTGGCCGAGATGCGGGA
GGAGTACGGGGTGTCCCCGGACGTGGTCTCGTACAACACGGCCATGGCCG
CGTTCAATGAGGCACGCCAACACCTGCGGGCCCTCTCGACCTTCGAGGAC
ATGCAAGCCGCGGGCGTCTCACCGGACACG
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