prot_Ecto-sp13_S_contig15205.3922.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig15205.3922.1
Unique Nameprot_Ecto-sp13_S_contig15205.3922.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length165
Homology
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BLAST of mRNA_Ecto-sp13_S_contig15205.3922.1 vs. uniprot
Match: D7FSS4_ECTSI (Poly(A)-binding protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSS4_ECTSI)

HSP 1 Score: 243 bits (620), Expect = 1.000e-76
Identity = 126/130 (96.92%), Postives = 126/130 (96.92%), Query Frame = 0 
Query:    1 MSQYQQHPAPASGVVDDAGEAFARAVFCRFLRQATISRDIDDVIEHMHIVNDDSQTFAIRLGGDARVPVSRELILALAAKKKELLALCESKLRTPRSIRGGGGQTVTGANTTAAGTPTGXXRPGLSSSLQ 130
            MSQYQQHPAPASGVVDDAGEAFARAVFCRFLRQATISRDIDDVIEHMHIVNDDSQTFAIRLGGDARVPVSRELILALAAKKKELLALCESKLRTPRSIRGGGG TVTGAN TAAGTPTG  RPGLSSSLQ
Sbjct:    1 MSQYQQHPAPASGVVDDAGEAFARAVFCRFLRQATISRDIDDVIEHMHIVNDDSQTFAIRLGGDARVPVSRELILALAAKKKELLALCESKLRTPRSIRGGGGHTVTGANATAAGTPTGGGRPGLSSSLQ 130
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15205.3922.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FSS4_ECTSI1.000e-7696.92Poly(A)-binding protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15205contigEcto-sp13_S_contig15205:2..2290 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15205.3922.1mRNA_Ecto-sp13_S_contig15205.3922.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig15205 2..3682 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig15205.3922.1 ID=prot_Ecto-sp13_S_contig15205.3922.1|Name=mRNA_Ecto-sp13_S_contig15205.3922.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=165bp
MSQYQQHPAPASGVVDDAGEAFARAVFCRFLRQATISRDIDDVIEHMHIV
NDDSQTFAIRLGGDARVPVSRELILALAAKKKELLALCESKLRTPRSIRG
GGGQTVTGANTTAAGTPTGGGRPGLSSSLQHYRQQGNPSTSPPDPAAAAA
GTAHHAVVFPPPAAL
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