mRNA_Ecto-sp13_S_contig15204.3921.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig15204.3921.1 vs. uniprot
Match: A0A6H5JIT4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIT4_9PHAE) HSP 1 Score: 809 bits (2089), Expect = 9.540e-281 Identity = 569/778 (73.14%), Postives = 584/778 (75.06%), Query Frame = 1
Query: 10 RARLVDGLLCSALSTELFLSGLDGSRVCADRERFAEEVGGPYARDDDFVSSSGFVNSFGALDSSS----EDXXXXXXKDEGREDVGGRLGEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSIADSTVPEGTSTEERTIAGRQGVLRLYGAALIKLRVSVFLFCSASTAAAGPTGEVDGDVEKSRNGNDKQGPSELTLRRQGVMSRENLDAVAAHLLSLRTETGGEDGDGQREVDSPAXXXXXXXXXXXXXXXPTVGGGEGVDSGRRARDWMRIEVGRAALCAGGSNAXXXXXXXXAGRNVPFSTRVAALLLSRSGERGGPLRAXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGEEGPRVTRTTPSVAEIEFGRDPWPEEDLPRASEHKRK---------------------------------------------RP-------------------------GGSGSDGEPPPRYARLLGQLPRDSRHLLARLGHHGYVKVLEHILQGFLRSSNGCASAEAPAAAAPAAAGDHASSSAHKTKIGTTDTAGADGSETAARPEPDNAAADDESAPPNADSILTENPGSSTRGDDLHESSSPPAPPPQLPDLDPDHNPGWSDPWRALQAGAPHPCLSGLVDPPGLATAGGTQLVLPMPNPFYRRVLHALCRVHGLRSRGGETLAAKRRLPPPXXXXXXXXXXXXXXXXXXXXGRALATTEGEAGEGVASLGGIAVRHRTVEVTRGDDSGEGQAKKRPGGGRGLADVLIPVEVLLRGNASA 2121
RARLVDGLLCSALST+LFLSGLDGSRV A RERF EEV GPYARDD FVSSSGFVNSFGALDSSS ED DEGRED+GGRLGE XXXXXXXXXXXX SIADSTVPEGTSTEE T AGRQGVLRLYG+ALIKLRVSVFLFCSA EKS +GNDKQGPSELTLRRQGVMSRENLDAVAAHLLSLRTETGG SP XXXXXXXXXXXXXXX E VDSGRRARDWM+IEVGRAALCAGGSNA AGRNVPFSTRVAALLLSRSGERG XXXXXXXXXXXXXXXXXXXXXXXXXXXX GEEGPRV RTTPSVAEIEFGRDPWPEEDLPRASE + RP GGSG DG+PPPRYARLLGQLPRDSRHLLARLGHHGYVKVLEHILQGFLRSSNG ASAEAPA GD ASSSA +TKIGTTDTAGA GSETAARP PDNAAA DESAPP+ADSILTE GSS GDDLH+SSSPP PPQLPDLDPDH+PG SDPWRALQAGAPHPCLSGLV+PP LATA GT+LVLPMPNPFYRRVLHALCRVHGLRSRGGETLAAKR XXXXXXXXXXXXXXXXXXXXGRALATTEGEAG+GV +LGGIAVRHRTVEVTRGDDSGEGQ KKRP RGLAD LIPVEVLL G ASA
Sbjct: 298 RARLVDGLLCSALSTDLFLSGLDGSRVGAVRERFGEEVEGPYARDDGFVSSSGFVNSFGALDSSSGSSSEDEEETGGMDEGREDLGGRLGEEGSSLSEDLAAXXXXXXXXXXXX-------SIADSTVPEGTSTEELTAAGRQGVLRLYGSALIKLRVSVFLFCSAXXXXXXXXXXXXXXXEKSIDGNDKQGPSELTLRRQGVMSRENLDAVAAHLLSLRTETGGGXXXXXXXXXSPVXXXXXXXXXXXXXXXXXXXXXEAVDSGRRARDWMKIEVGRAALCAGGSNAAATATG--AGRNVPFSTRVAALLLSRSGERGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGEEGPRVIRTTPSVAEIEFGRDPWPEEDLPRASEQVARIFLGQGAGDRAGAASSNRGGXXXXXXXXXXXXXXGIVASGDGGTNRPXXXXXXXXXXXXXXXXXXGXXXXXXGGSGGDGQPPPRYARLLGQLPRDSRHLLARLGHHGYVKVLEHILQGFLRSSNGSASAEAPAXXXXXXXGDPASSSALETKIGTTDTAGAGGSETAARPAPDNAAAADESAPPDADSILTEIAGSSAPGDDLHDSSSPP--PPQLPDLDPDHDPGRSDPWRALQAGAPHPCLSGLVEPPELATAVGTRLVLPMPNPFYRRVLHALCRVHGLRSRGGETLAAKRXXXXXXXXXXXXXXXXXXXXXXXXXGRALATTEGEAGQGVGNLGGIAVRHRTVEVTRGDDSGEGQEKKRPADRRGLADALIPVEVLLGGEASA 1064
BLAST of mRNA_Ecto-sp13_S_contig15204.3921.1 vs. uniprot
Match: D8LKV8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKV8_ECTSI) HSP 1 Score: 617 bits (1590), Expect = 8.080e-209 Identity = 440/712 (61.80%), Postives = 448/712 (62.92%), Query Frame = 1
Query: 10 RARLVDGLLCSALSTELFLSGLDGSRVCADRERFAEEVGGPYARDDDFVSSSGFVNSFGALDSSS----EDXXXXXXKDEGREDVGGRLGEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSIADSTVPEGTSTEERTIAGRQGVLRLYGAALIKLRVSVFLFCSASTAAAGPTGEVDGDVE--KSRNGNDKQGPSELTLRRQGVMSRENLDAVAAHLLSLRTETGGEDGDGQREVDSPAXXXXXXXXXXXXXXXPTVGGGEGVDSGRRARDWMRIEVGRAALCAGGSNAXXXXXXXXAGRNVPFSTRVAALLLSRSGERGGPLRAXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGEEGPRVTRTTPSVAEIEFGRDPWPEEDLPRASEHKRKRPGGSGSDGEPPPRYARLLGQLPRDSRHLLARLGHHGYVKVLEHILQGFLRSSNGCASAEAPAAAAPAAAGDHASSSAHKTKIGTTDTAGADGSETAARPEPDNAAADDESAPPNADSILTENPGSSTRGDDLHESSSPPAPPPQLPDLDPDHNPGWSDPWRALQAGAPHPCLSGLVDPPGLATAGGTQLVLPMPNPFYRRVLHALCRVHGLRSRGGETLAAKRRLPPPXXXXXXXXXXXXXXXXXXXX--GRALATTEGEAGEGVASLGGIAVRHRTVEVTRGDDSGEGQAKKRPGGGRGLADVLIPVEVLLRGNASA 2121
RARLVDGLLCSALST+LFLSGLDGSRV AD ERF EEV GPYA DDDFVSSSGFVNSFGALDSSS ED DEGR DVGGRLGE XXXXXXXXXXXXXXXXXXX IADSTVPEGTST+ERT AGRQGVLRLYGAALIKLRVSVF K ++GNDK+GPSELTLRRQGVMSRENLDAVA K KRPGGSGSDG PPPRYARLLGQLPRDSRHLLARLGHHGYVKVLEHILQGFLRSSNG AS EAPAAAAPAAAGD ASSSA +T IGTTDTAGADG ETAARP PDNA A DESAPP+ADSILTENPGSS RGDDLHESS PP PPQLPDL PDH PG SDPWRALQAGAPHPCLSGLVDPPGLATAGGT+LVLPMPNPFYRRVLHALCRVHGLRSRGGETLAAKR LPP XXXXXXXXXXXXXXXXXXXX GRALATTEGEAGEGV SLGGIAVRHRTVEVTRGD KKRPGGGRGL DVLIPVEVLL A A
Sbjct: 291 RARLVDGLLCSALSTDLFLSGLDGSRVGADLERFGEEVEGPYAHDDDFVSSSGFVNSFGALDSSSGSSSEDEERARGMDEGRGDVGGRLGEQGSSLSEDLAXXXXXXXXXXXXXXXXXXXP-IADSTVPEGTSTDERTAAGRQGVLRLYGAALIKLRVSVFXXXXXXXXXXXXXXXXXXXXXXXKGKDGNDKEGPSELTLRRQGVMSRENLDAVA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------KLKRPGGSGSDGHPPPRYARLLGQLPRDSRHLLARLGHHGYVKVLEHILQGFLRSSNGSASLEAPAAAAPAAAGDPASSSALETNIGTTDTAGADGCETAARPAPDNATAADESAPPDADSILTENPGSSARGDDLHESSWPP--PPQLPDLVPDHGPGRSDPWRALQAGAPHPCLSGLVDPPGLATAGGTRLVLPMPNPFYRRVLHALCRVHGLRSRGGETLAAKRILPPXXXXXXXXXXXXXXXXXXXXXAAGRALATTEGEAGEGVGSLGGIAVRHRTVEVTRGDGXXXXXXKKRPGGGRGLGDVLIPVEVLLGEEACA 824 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15204.3921.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig15204.3921.1 >prot_Ecto-sp13_S_contig15204.3921.1 ID=prot_Ecto-sp13_S_contig15204.3921.1|Name=mRNA_Ecto-sp13_S_contig15204.3921.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=708bp MRFRARLVDGLLCSALSTELFLSGLDGSRVCADRERFAEEVGGPYARDDDback to top mRNA from alignment at Ecto-sp13_S_contig15204:1829..4147- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig15204.3921.1 ID=mRNA_Ecto-sp13_S_contig15204.3921.1|Name=mRNA_Ecto-sp13_S_contig15204.3921.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2319bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15204:1829..4147- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15204:1829..4147- >mRNA_Ecto-sp13_S_contig15204.3921.1 ID=mRNA_Ecto-sp13_S_contig15204.3921.1|Name=mRNA_Ecto-sp13_S_contig15204.3921.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=2124bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15204:1829..4147- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |