mRNA_Ecto-sp13_S_contig15185.3908.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig15185.3908.1
Unique NamemRNA_Ecto-sp13_S_contig15185.3908.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig15185.3908.1 vs. uniprot
Match: A0A6H5JNR4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JNR4_9PHAE)

HSP 1 Score: 225 bits (574), Expect = 2.410e-74
Identity = 115/121 (95.04%), Postives = 119/121 (98.35%), Query Frame = 1 
Query:    1 MSKAAAPARAVASRAAPAAPKRGMAGGAAPKYTGWEAQIREKLPKDEHVVVAISGFYVGLYVVCKGLSALFSSPKKEVAAPVVASSATSSDIPDGYEDNFWQWLEGAGNMEKYLATIDKAQ 363
            MSKAAAPARAVASRAAPA PKRGMAGGAAP+YTGWEAQIREKLPKDEHVVVAISGFYVGLYV+ KG+SALFSSP+KEVAAPVVASSATSSDIPDGYEDNFWQWLEGAGNMEKYLATIDKAQ
Sbjct:    7 MSKAAAPARAVASRAAPAVPKRGMAGGAAPEYTGWEAQIREKLPKDEHVVVAISGFYVGLYVLVKGISALFSSPEKEVAAPVVASSATSSDIPDGYEDNFWQWLEGAGNMEKYLATIDKAQ 127
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BLAST of mRNA_Ecto-sp13_S_contig15185.3908.1 vs. uniprot
Match: A0A6U4IDD0_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4IDD0_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 2.590e-7
Identity = 37/102 (36.27%), Postives = 53/102 (51.96%), Query Frame = 1 
Query:   58 PKRGMAGGAAPKYTGWEAQ--IREKLPKDEHVVVAISGFYVGLYVVCKGLSALFSSPKKEVAAPVVASSATSSD-IPDGYEDNFWQWLEGAGNMEKYLATID 354
            PKR   GGAA +Y        +R+ LP+D HVV+AI G Y  LY+    LS LFS  K          ++TSS  +    ++ F +W+   GN+EKY   ++
Sbjct:   28 PKR-FGGGAAVEYEPGSPDYIVRQYLPEDRHVVMAICGGYFSLYL----LSKLFSGGKXXXXXXXXXPASTSSSGVKSMADEGFAEWIAVDGNIEKYFKAVE 124
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BLAST of mRNA_Ecto-sp13_S_contig15185.3908.1 vs. uniprot
Match: A0A7R9UII2_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UII2_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 3.210e-7
Identity = 39/105 (37.14%), Postives = 56/105 (53.33%), Query Frame = 1 
Query:   58 PKRGMAGGAAPKYTGWEAQ--IREKLPKDEHVVVAISGFYVGLYVVCKGLSALFS--SPKKEVA--APVVASSATSSDIPDGYEDNFWQWLEGAGNMEKYLATID 354
            PKR  AGGA  +Y        +R+ LP D+ +VVAI   Y G+Y+    LS LFS  S K+E A  AP  A++  +  +    ++ F  W+   GN EKYL + +
Sbjct:   39 PKR-FAGGAPTEYAPGSLDYIVRQYLPHDKQIVVAIVSGYFGIYL----LSTLFSGGSKKEETAEAAPAPAAAPAAGGVLSMEDEGFGDWIMQEGNFEKYLNSFE 138
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15185.3908.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JNR4_9PHAE2.410e-7495.04Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6U4IDD0_9STRA2.590e-736.27Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7R9UII2_9STRA3.210e-737.14Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15185contigEcto-sp13_S_contig15185:1028..3110 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score231.5
Seed ortholog evalue2.1e-58
Seed eggNOG ortholog2880.D8LBJ5
Model size366
Hectar predicted targeting categorymitochondrion
Exons3
EggNOG OGs2CYCG@1,2S3JM@2759
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-27_003740.1
Cds size366
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462807.886791-CDS-Ecto-sp13_S_contig15185:1027..11711681462807.886791-CDS-Ecto-sp13_S_contig15185:1027..1171Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15185 1028..1171 +
1681462807.8983915-CDS-Ecto-sp13_S_contig15185:2412..25031681462807.8983915-CDS-Ecto-sp13_S_contig15185:2412..2503Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15185 2413..2503 +
1681462807.908489-CDS-Ecto-sp13_S_contig15185:2979..31101681462807.908489-CDS-Ecto-sp13_S_contig15185:2979..3110Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15185 2980..3110 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15185.3908.1prot_Ecto-sp13_S_contig15185.3908.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig15185 1028..3110 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig15185.3908.1

>prot_Ecto-sp13_S_contig15185.3908.1 ID=prot_Ecto-sp13_S_contig15185.3908.1|Name=mRNA_Ecto-sp13_S_contig15185.3908.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=122bp
MSKAAAPARAVASRAAPAAPKRGMAGGAAPKYTGWEAQIREKLPKDEHVV
VAISGFYVGLYVVCKGLSALFSSPKKEVAAPVVASSATSSDIPDGYEDNF
WQWLEGAGNMEKYLATIDKAQ*
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mRNA from alignment at Ecto-sp13_S_contig15185:1028..3110+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig15185.3908.1 ID=mRNA_Ecto-sp13_S_contig15185.3908.1|Name=mRNA_Ecto-sp13_S_contig15185.3908.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2083bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15185:1028..3110+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCGAAGGCTGCGGCACCCGCAAGGGCAGTTGCGTCGCGAGCGGCGCC
AGCAGCCCCCAAGCGTGGAATGGCGGGCGGAGCAGCTCCGAAGTACACGG
GTTGGGAGGCCCAGATCAGGGAGAAGCTTCCCAAGGACGAGCACGTGAGT
ATCCGTGGCAGCGACGCAGGGACGGAGACAAGCAGCTGCAGGAAATGGGG
TGACGAAACGCTCCTGTTGATCTCCGGTTGCATCGCCTTACTACTCTGAA
TGGCCCTGTGTTTTGTTTGTGCCGAACCATCGTGGCGGAAATGCATGTCC
AAGTTTACGTTTCGGAAGTTCTTGCTGCACTGGCTGTGTTCATAGCGCGT
GAAAGGACGACGGGACTCATTTGACTGCTGTTGTCCCACGAAGAGGAGGT
TGCAAGCTCTATCGTGTTGACCTATCGAATAGAATCCATGGTGGCCCCTC
ACTTGTGAGATCGGAGCTGTAGTTCACCCCACCGCCGCTGGTATTTACAT
CCATACACCCTGCTGTGCAGTATACACGCTAGCGAACGGTGATGCAGCAT
CTAGCCTCGACACTCGGTAGCGAGAGCGGATTCGACTCATCCTAGGTGTG
CTTGGTAGACTCAGCTCAACCTTGCTACATTGTTTTCGACCGTTGTTGGC
TACGCCGGGAGTAACACCCGTTTGCTAGGTCATGCTTATTAATCCGTGCT
TGCATCTATCTGCTCGGCGATCGACGATGCCCCTTTTGGGGTGCACGGCA
TCCGGAAGCGGGTTTCTTCCGTCAACCCTGATTTGCTTGGACGGATGGAC
GCACCCATCGGATATTGTAGCACTTTTGATAGGGCATCTAGCATTCGTTT
TCGTTCAGATCTATGCCCAAGCAAAAAACAAGGTGTAGAGAGCAGGCCCC
AAGATTTTTGCGCACAACTGAAACGAAAAAGCAGTCGCCGACATCGTGTA
CCGTTTTAGTGCGGCAAAACTGCCGTTGTCTCTGCCTTCTCTCAAGCCGT
ATGACGACTGCTGTTGTTTCAGGAGCGGGCGGCCTAATGAACCAATTCAC
GCCACTACCTTCACCTCTCTTGTGTATGCCTTGTTCAAATTATTGCATGT
GCAAATAACGTCTTGGCAGAATCTGGAATATCTGAGTAAATTCGGACACC
GGACACCCATTAGGCGGATACCTGTCTGCAACAGCAAGGAGGCTAGGGCT
CGTTTCCAGTACCTCTGTTTTTCTTTCTCGAAATGCGCATCTACTACTCT
GGTTACATTCAGGAATCCAGCCTGTTTCCCACATGAGACCGCTATTCCCA
GGGTGCGCGTTAGGGTCTACTACCGCTGTAAGTGTGACCCGTCCCTTCCA
TGCCGTGCGCCTGTCATATTCATCGGATGGTGCAGGTGGTGGTTGCCATC
AGCGGGTTTTACGTGGGTTTGTACGTGGTTTGCAAGGGACTTTCGGCGCT
CTTCTCGTCCCCCAAGAAGGAAGTCGGTGAGAAGTCACGACAGACGGGCA
CTCAGTGCTTTACATACAGTTCGAGTGTTTACCCACCCGTAAGGATGATA
AGTCTTTCTTGTGACCAGCAAGCTTCTGGCTTTGCAACACATCTGGAGAC
TCAGACAATCAAAAATCGTTCAGCGGGATATGTCTCATAGCCCGATGCGT
TGATGCGGTGGTTCAAGATCGAAAGGATGGTGGACATTGTGTGTGTACGT
GGAGTGTTTTTCTTGCTTGCGTTGCGTTCGCACGTTTGCGCGTCGGGATG
ATTGAGCGAAGACGTTGCGCAAAAGGACAGCTTTGCCGTACGCGCGCTAC
TTTCTGATGTCGATAGGGGCAGGCAGTCTTTGCACAATTTTTTAAAAGCG
TTTCGGAATTTCTCTCCCGCTCCTGCCCCCCGCCCTCCGTACCCATCTAT
GCCCCCTCTTCGTCTGTGCACGCGCGCGCTACTGTGACGGGCTCCCTCGC
AGCTGCCCCCGTCGTCGCTTCATCCGCAACGAGTTCTGACATCCCCGACG
GATACGAGGACAACTTCTGGCAGTGGCTCGAGGGCGCGGGAAACATGGAG
AAGTACCTTGCGACAATCGACAAGGCTCAGTAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15185:1028..3110+

>mRNA_Ecto-sp13_S_contig15185.3908.1 ID=mRNA_Ecto-sp13_S_contig15185.3908.1|Name=mRNA_Ecto-sp13_S_contig15185.3908.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=366bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15185:1028..3110+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCGAAGGCTGCGGCACCCGCAAGGGCAGTTGCGTCGCGAGCGGCGCC
AGCAGCCCCCAAGCGTGGAATGGCGGGCGGAGCAGCTCCGAAGTACACGG
GTTGGGAGGCCCAGATCAGGGAGAAGCTTCCCAAGGACGAGCACGTGGTG
GTTGCCATCAGCGGGTTTTACGTGGGTTTGTACGTGGTTTGCAAGGGACT
TTCGGCGCTCTTCTCGTCCCCCAAGAAGGAAGTCGCTGCCCCCGTCGTCG
CTTCATCCGCAACGAGTTCTGACATCCCCGACGGATACGAGGACAACTTC
TGGCAGTGGCTCGAGGGCGCGGGAAACATGGAGAAGTACCTTGCGACAAT
CGACAAGGCTCAGTAG
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