mRNA_Ecto-sp13_S_contig15038.3808.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_Ecto-sp13_S_contig15038.3808.1
Unique Name	mRNA_Ecto-sp13_S_contig15038.3808.1
Type	mRNA
Organism	Ectocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)

Homology

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BLAST of mRNA_Ecto-sp13_S_contig15038.3808.1 vs. uniprot
Match: D8LNK5_ECTSI (Ferric reductase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNK5_ECTSI)

HSP 1 Score: 400 bits (1029), Expect = 1.670e-132
Identity = 198/211 (93.84%), Postives = 200/211 (94.79%), Query Frame = 2

Query:  197 LSVIAAYFGFAASCHFAVILIPVARDSKLWSAVGIPFERAVLYHVIAGHLAFATMFLHAFLFLSSCVWENGWRHAWRVSTRQTNEDYGDVDLPMGWAAGLCALPMWITSVNYVRRRWYSLFKASHWLFIGVFIFGALHWDTNAIYFGGGLALYTMHVMSRLAAWKRXXXXXXXLKPAESASPTSLLDVHTTENYTRLVLKNPKCDEPARGG 829
            LSVIAAYFGFAASCHFAVILIPVARDSKLWSAVGIPFERAVLYHVIAGHLAFATMFLHAFLFLSSCVWENGWRHAW VST Q N+DYGDVD+PMGWAAGLCALPMWITSVNYVRRRWYSLFKASHWLFIGVFIFGALHWDTNAIYFGGGLALY MHVMSR      XXXXXXXLKPAES SPTSLLDVHTTENYTRLVLKNPKCDEPARGG
Sbjct:  144 LSVIAAYFGFAASCHFAVILIPVARDSKLWSAVGIPFERAVLYHVIAGHLAFATMFLHAFLFLSSCVWENGWRHAWEVSTLQANDDYGDVDVPMGWAAGLCALPMWITSVNYVRRRWYSLFKASHWLFIGVFIFGALHWDTNAIYFGGGLALYIMHVMSRXXXXXXXXXXXXXLKPAESPSPTSLLDVHTTENYTRLVLKNPKCDEPARGG 354

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BLAST of mRNA_Ecto-sp13_S_contig15038.3808.1 vs. uniprot
Match: D7FK19_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK19_ECTSI)

HSP 1 Score: 300 bits (767), Expect = 8.070e-95
Identity = 160/280 (57.14%), Postives = 196/280 (70.00%), Query Frame = 2

Query:    2 WMSVGEFATLLLWVGAMASHFWQGAYRSIQRYHDGTWP-CPDDPTSKCYL--DTRGEPEPAETTGQNRLSVIAAYFGFAASCHFAVILIPVARDSKLWSAVGIPFERAVLYHVIAGHLAFATMFLHAFLFLSSCVWENGWRHAWRVSTRQTNEDYGD-VDLPMGWAAGLCALPMWITSVNYVRRRWYSLFKASHWLFIGVFIFGALHWDTNAIYFGGGLALYTMHVMSRLAAWKRXXXXXXXLKPAESASPTSLLDVHTTENYTRLVLKNPKCDEPARGG 829
            W++VGE A + LW+  M S   QG    + R H  ++  C DDPT  C     T G P P     Q  L  +A YFG+  S HFAVIL+PVARDSK+WS++G+P+ERAVLYH  AGHLAF TM +HAFLF+   VW +GW HA R S     E +   +D+PMGW A LC LPMWITS+N+VRRR+YSLFK +H+LFIGVF+FGA+HW  N +Y+ GGL LYT+H+MSRL +WKRXXXXXXX KP   ASPTSL+  +T ENYTRLVL+NPK    ARGG
Sbjct:  135 WLTVGEAAAMFLWICVMVSELTQGV---LAREHGESYVVCEDDPTDWCSSRDGTPGGPTP----NQWMLFRVATYFGYICSSHFAVILVPVARDSKIWSSLGVPYERAVLYHTFAGHLAFTTMAVHAFLFVVYWVWYDGWAHAIRESIHAPAEKHHHGLDIPMGWMALLCGLPMWITSINFVRRRYYSLFKLAHFLFIGVFVFGAMHWSRNTLYYLGGLTLYTLHIMSRLESWKRXXXXXXXFKPETKASPTSLVSAYTNENYTRLVLRNPK-KASARGG 406

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BLAST of mRNA_Ecto-sp13_S_contig15038.3808.1 vs. uniprot
Match: D7G8Y6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8Y6_ECTSI)

HSP 1 Score: 287 bits (735), Expect = 1.330e-89
Identity = 149/271 (54.98%), Postives = 180/271 (66.42%), Query Frame = 2

Query:    2 WMSVGEFATLLLWVGAMASHFWQGAYRSIQRYHDGTWPCPDDPTSKC--YLDTRGEPEPAETTGQNRLSVIAAYFGFAASCHFAVILIPVARDSKLWSAVGIPFERAVLYHVIAGHLAFATMFLHAFLFLSSCVWENGWRHAWRVSTRQTNEDYGDVDLPMGWAAGLCALPMWITSVNYVRRRWYSLFKASHWLFIGVFIFGALHWDTNAIYFGGGLALYTMHVMSRLAAWKRXXXXXXXLKPAESAS-PTSLLDVHTTENYTRLVLKNPK 805
            W++VGE   L LW+ AM S  WQG       +HD    CPDDPT  C  +    G P P     Q RL +I  + G   S HFA+IL+PV+RDSK+WSA+G+PFERAVLYH IAGHLAF ++F HA L  +  V   GW HA   S       +G VD+PMGW AGLCA+PMW TSVN+VRR++YSLFK +HWLFIGVF+F  +HW  NA+YF GGL LY MHV+SRL +W  XXXXXXX         PTSL+ V T +NYTRLVL+NPK
Sbjct:   12 WLTVGETTVLTLWLLAMGSQCWQGVLNHGNHFHDIYMVCPDDPTQWCNQFSFESGGPTP----NQYRLRMIGIFMGLVCSSHFAIILVPVSRDSKIWSALGVPFERAVLYHAIAGHLAFTSLFFHALLLTAHWVQYEGWSHAVHESIHFDPNTHGGVDIPMGWMAGLCAIPMWATSVNWVRRKYYSLFKLAHWLFIGVFVFSVMHWAPNALYFLGGLTLYIMHVLSRLESWXXXXXXXXXXXXXXXXXXPTSLVSVATNDNYTRLVLRNPK 278

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BLAST of mRNA_Ecto-sp13_S_contig15038.3808.1 vs. uniprot
Match: D7G5Y8_ECTSI (Uncharacterized protein n=4 Tax=Ectocarpus TaxID=2879 RepID=D7G5Y8_ECTSI)

HSP 1 Score: 289 bits (739), Expect = 1.630e-88
Identity = 154/286 (53.85%), Postives = 184/286 (64.34%), Query Frame = 2

Query:    2 WMSVGEFATLLLWVGAMASHFWQGAYRSIQRYHDGTWPCPDDPTSKC--YLDTRGEPEPAETTGQNRLSVIAAYFGFAASCHFAVILIPVARDSKLWSAVGIPFERAVLYHVIAGHLAFATMFLHAFLFLSSCVWENGWRHAWRVSTRQTNEDYGDVDLPMGWAAGLCALPMWITSVNYVRRRWYSLFKASHWLFIGVFIFGALHWDTNAIYFGGGLALYTMHVMSRLAAWKRXXXXXXXLKPAESAS-PTSLLDVHTTENYTRLVLKNPKC-------DEPARGG 829
            W++VGE   L LW+ AM S  WQG       +HD    CPDDPT  C  +    G P P     Q RL +I  + G   S HFA+IL+PV+RDSK+WSA+G+PFERAVLYH IAGHLAF ++F HA L  +  V   GW HA   S       +G VD PMGW AGLCA+PMW TSVN+VRR++YSLFK +HWLFIGVF+F  +HW  NA+YF GGL LY MHV+SRL +W  XXXXXXX         PTSL+ V T +NYTRLVL+NPK        D  ARGG
Sbjct:  143 WLTVGETTVLTLWLLAMGSQCWQGVLNHGNHFHDIYMVCPDDPTQWCNQFSFESGGPTP----NQYRLRMIGIFMGLVCSSHFAIILVPVSRDSKIWSALGVPFERAVLYHAIAGHLAFTSLFFHALLLTAHWVQYEGWSHAVHESIHFDPNTHGGVDTPMGWMAGLCAIPMWATSVNWVRRKYYSLFKLAHWLFIGVFVFSVMHWAPNALYFLGGLTLYIMHVLSRLESWXXXXXXXXXXXXXXXXXXPTSLVSVATNDNYTRLVLRNPKTGGVGDSGDRSARGG 424

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BLAST of mRNA_Ecto-sp13_S_contig15038.3808.1 vs. uniprot
Match: D7FGP2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGP2_ECTSI)

HSP 1 Score: 272 bits (695), Expect = 1.970e-83
Identity = 146/270 (54.07%), Postives = 173/270 (64.07%), Query Frame = 2

Query:   50 MASHFWQGAYRSIQRYHDGTWPCPDDPTSKC--YLDTRGEPEPAETTGQNRLSVIAAYFGFAASCHFAVILIPVARDSKLWSAVGIPFERAVLYHVIAGHLAFATMFLHAFLFLSSCVWENGWRHAWRVSTRQTNEDYGDVDLPMGWAAGLCALPMWITSVNYVRRRWYSLFKASHWLFIGVFIFGALHWDTNAIYFGGGLALYTMHVMSRLAAWKRXXXXXXXLKPAESAS-PTSLLDVHTTENYTRLVLKNPKC-------DEPARGG 829
            M S  WQG       +HD    CPDDPT  C  +    G P P     Q RL +I  + G   S HFA+IL+PV+RDSK+WSA+G+PFERAVLYH IAGHLAF ++F HA L  +  V   GW HA   S       +G VD PMGW AGLCA+PMW TSVN+VRR++YSLFK +HWLFIGVF+F  +HW  NA+YF GGL LY MHV+SRL +W  XXXXXXX         PTSL+ V T +NYTRLVL+NPK        D  ARGG
Sbjct:    1 MGSQCWQGVLNHGNHFHDIYMVCPDDPTQWCNQFSFESGGPTP----NQYRLRMIGIFMGLVCSSHFAIILVPVSRDSKIWSALGVPFERAVLYHAIAGHLAFTSLFFHALLLTAHWVQYEGWSHAVHESIHFDPNTHGGVDTPMGWMAGLCAIPMWATSVNWVRRKYYSLFKLAHWLFIGVFVFSVMHWAPNALYFLGGLTLYIMHVLSRLESWXXXXXXXXXXXXXXXXXXPTSLVSVATNDNYTRLVLRNPKTGGVGDSGDRSARGG 266

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BLAST of mRNA_Ecto-sp13_S_contig15038.3808.1 vs. uniprot
Match: A0A6H5KAK2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAK2_9PHAE)

HSP 1 Score: 243 bits (621), Expect = 1.020e-74
Identity = 116/191 (60.73%), Postives = 142/191 (74.35%), Query Frame = 2

Query:  260 PVARDSKLWSAVGIPFERAVLYHVIAGHLAFATMFLHAFLFLSSCVWENGWRHAWRVSTRQTNEDYGD-VDLPMGWAAGLCALPMWITSVNYVRRRWYSLFKASHWLFIGVFIFGALHWDTNAIYFGGGLALYTMHVMSRLAAWKRXXXXXXXLKPAESASPTSLLDVHTTENYTRLVLKNPKCDEPARGG 829
            P ARDSK+WS++G+P+ERAVLYH  AGHLAF TM +HAFLF+   VW +GW HA R S     E +   +D+PMGW A LC LPMWITS+N+VRRR+YSLFK +H+LFIGVF+FGA+HW  N +Y+ GGL LYT+H+MSRL +WKR        KP   ASPTSL+  +T ENYTRLVL+NPK    ARGG
Sbjct:  124 PAARDSKIWSSLGVPYERAVLYHTFAGHLAFTTMAVHAFLFVVYWVWYDGWAHAIRESIHAPAEKHHHGLDIPMGWMALLCGLPMWITSINFVRRRYYSLFKLAHFLFIGVFVFGAMHWSRNTLYYLGGLTLYTLHIMSRLESWKRW------FKPETKASPTSLVSAYTNENYTRLVLRNPK-KASARGG 307

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BLAST of mRNA_Ecto-sp13_S_contig15038.3808.1 vs. uniprot
Match: A0A6H5KRK1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRK1_9PHAE)

HSP 1 Score: 196 bits (497), Expect = 6.930e-54
Identity = 106/280 (37.86%), Postives = 154/280 (55.00%), Query Frame = 2

Query:    2 WMSVGEFATLLLWVGAMASHFWQGAYRSIQRYHDGTWPCPDDPTSKCYLDTRGEPEPAETTGQNRLSV--IAAYFGFAASCHFAVILIPVARDSKLWSAVGIPFERAVLYHVIAGHLAFATMFLHAFLFLSSCVWENGWRHAWRVSTRQTNEDYGDVDLPMGWAAGLCALPMWITSVNYVRRRWYSLFKASHWLFIGVFIFGALHWDTNAIYFGGGLALYTMHVMSRLAAWKRXXXXXXXL--KPAESASPTSLLDVHTTENYTRLVLKNPKCDEPARGG 829
            WM+VGE   LL +V  + +  WQG    +Q Y +                     + +  TG + + +  IA Y GFAA+  F+++LIPV+RDSK+WS +G+P ERA+LYH   GHLAF ++FLH  L+++  V ++GW +A   S     +    V++P G+ AGLCALPMW+ S+++ RR +Y LFK  H+LFIGVF  G +H+D    Y   G  LY +H + RL  W              A      +L+ +   + YTRLVL+NP    PA+GG
Sbjct:  139 WMTVGEVLALLGYVILIITMVWQGVNFKVQEYSE---------------------QHSTGTGNSLIILKNIAKYTGFAAAIQFSIVLIPVSRDSKIWSTIGVPVERAILYHTTLGHLAFVSLFLHGILYMAYYVQKHGWAYAVNSSFHYKGKG---VNVPAGFIAGLCALPMWVLSLHFFRREYYRLFKTGHFLFIGVFGAGMVHYDGFVHYLLAGFVLYLVHAVYRLGNWNWWSVLRQCFCKSSARGCGGCALVHLEAGDGYTRLVLRNPSNHSPAKGG 394

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BLAST of mRNA_Ecto-sp13_S_contig15038.3808.1 vs. uniprot
Match: D7G4X0_ECTSI (Ferric chelate reductase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4X0_ECTSI)

HSP 1 Score: 187 bits (476), Expect = 9.690e-52
Identity = 93/213 (43.66%), Postives = 130/213 (61.03%), Query Frame = 2

Query:  197 LSVIAAYFGFAASCHFAVILIPVARDSKLWSAVGIPFERAVLYHVIAGHLAFATMFLHAFLFLSSCVWENGWRHAWRVSTRQTNEDYGDVDLPMGWAAGLCALPMWITSVNYVRRRWYSLFKASHWLFIGVFIFGALHWDTNAIYFGGGLALYTMHVMSRLAAWKRXXXXXXXL--KPAESASPTSLLDVHTTENYTRLVLKNPKCDEPARGG 829
            L  +A Y GFAA+  F+++LIPV+RDSK+WS +G+P ERAVLYH   GHLAF ++FLH  L+++  V ++GW +A   S     +    V++P G+ AGLCALPMW+ S+++ RR +Y LFK SH+LFIGVF  G +H+D    Y   G  LY +H + RL  W              A      +L+ +   + YTRLVL+NP    PA+GG
Sbjct:   31 LKNVAKYTGFAAAIQFSIVLIPVSRDSKIWSTIGVPVERAVLYHTTLGHLAFVSLFLHGILYMAYYVQKHGWAYAVNSSFHYKGKG---VNVPAGFIAGLCALPMWVLSLHFFRREYYRLFKTSHFLFIGVFGAGMVHYDGFVHYLLAGFVLYLVHAVYRLGNWNWWSVLRQCFCKSSARGCGDCALVHLEAGDGYTRLVLRNPSNHSPAKGG 240

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BLAST of mRNA_Ecto-sp13_S_contig15038.3808.1 vs. uniprot
Match: A0A6H5JBW2_9PHAE (Ferric oxidoreductase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBW2_9PHAE)

HSP 1 Score: 167 bits (423), Expect = 3.490e-47
Identity = 90/140 (64.29%), Postives = 98/140 (70.00%), Query Frame = 2

Query:  446 NEDYGDVDLPMGWAAGLCALPMWITSVNYVRRRWYSLFKASHWLFIGVFIFGALHWDTNAIYFGGGLALYTMHVMSRLAA------------WKRXXXXXXXLKPAESASPTSLLDVHTTENYTRLVLKNPKCDEPARGG 829
            N+DYG+VD+PMGWAA LCALPMWITSVNYVRRRWY LFKASHWLFIGVFIF ALH       F       T+H  SR++A            W R       LKPA+SASPTSLLDVHTTEN T LVLK+P CDEPARGG
Sbjct:    5 NDDYGNVDVPMGWAAQLCALPMWITSVNYVRRRWYRLFKASHWLFIGVFIFVALHSSVVISPFSPLFLRRTIH--SRVSALFSTPCRNVWRYWNRC------LKPADSASPTSLLDVHTTENCTCLVLKSPTCDEPARGG 136

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BLAST of mRNA_Ecto-sp13_S_contig15038.3808.1 vs. uniprot
Match: A0A835YW60_9STRA (Ferric oxidoreductase domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YW60_9STRA)

HSP 1 Score: 168 bits (426), Expect = 7.260e-44
Identity = 98/276 (35.51%), Postives = 137/276 (49.64%), Query Frame = 2

Query:    2 WMSVGEFATLLLWVGAMASHFWQGAYRSIQRYHDGTWPCPDDPTSKC--YLDTRGE-PEPAETTGQNRLSVIAAYFGFAASCHFAVILIPVARDSKLWSAVGIPFERAVLYHVIAGHLAFATMFLHAFLFLSSCVWENGWRHAWRVST-----------------RQTNEDYGD-------VDLPMGWAAGLCALPMWITSVNYVRRRWYSLFKASHWLFIGVFIFGALHWDTNAIYFGGGLALYTMHVMSRLAAWKRXXXXXXXLKPAESASPTS 748
            W S GE      WV +  +  W  A +  +   D   PCP D T  C  Y+D+  + PE A    Q +L + A   GF A+   A++L+PV+R S+LW+A+ +PFERAVLYH I GH  F  + LHAFL     +W  GW + W  S                  RQ  +   +       + +P GW A L  +P+WITS  YVRR WYSLFKA HW+ + V  F  +H+   A +    + LY  H+ +RLA+W+R         PA   S ++
Sbjct:  147 WASFGELTVFAAWVVSHVTGTW-AATKWAEDLPDYIEPCPFDVTKTCWNYIDSGADAPELAPNMAQYKLYMAALGIGFLATTDLALVLLPVSRTSRLWAALDVPFERAVLYHKIIGHTFFWDVVLHAFLCCVYWIWFQGWDYMWSESVTWDGSSDSYRHSRSVLERQAPDVVTEPLDGVKHISIPAGWMALLFGVPLWITSTGYVRRHWYSLFKAVHWMCVPVLYFSVMHYYGVAAFLIAPVGLYAAHIATRLASWQRWRLWQRWTGPAAERSSSA 421

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp13_S_contig15038.3808.1 vs. uniprot

BLAST of mRNA_Ecto-sp13_S_contig15038.3808.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D8LNK5_ECTSI	1.670e-132	93.84	Ferric reductase n=1 Tax=Ectocarpus siliculosus Ta...	[more]
D7FK19_ECTSI	8.070e-95	57.14	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
D7G8Y6_ECTSI	1.330e-89	54.98	Uncharacterized protein n=2 Tax=Ectocarpus silicul...	[more]
D7G5Y8_ECTSI	1.630e-88	53.85	Uncharacterized protein n=4 Tax=Ectocarpus TaxID=2...	[more]
D7FGP2_ECTSI	1.970e-83	54.07	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
A0A6H5KAK2_9PHAE	1.020e-74	60.73	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KRK1_9PHAE	6.930e-54	37.86	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
D7G4X0_ECTSI	9.690e-52	43.66	Ferric chelate reductase n=1 Tax=Ectocarpus silicu...	[more]
A0A6H5JBW2_9PHAE	3.490e-47	64.29	Ferric oxidoreductase domain-containing protein n=...	[more]
A0A835YW60_9STRA	7.260e-44	35.51	Ferric oxidoreductase domain-containing protein n=...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp13_S_contig15038	contig	Ecto-sp13_S_contig15038:1713..3992 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.0	2022-07-08

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Stop	0
Start	1
Seed ortholog score	400.2
Seed ortholog evalue	7.8e-109
Seed eggNOG ortholog	2880.D8LNK5
Preferred name	AIM14
Model size	829
KEGG ko	ko:K00521
Hectar predicted targeting category	signal peptide
GOs	GO:0000322,GO:0000323,GO:0000324,GO:0000329,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005774,GO:0005783,GO:0006873,GO:0006875,GO:0006915,GO:0008150,GO:0008152,GO:0008219,GO:0009987,GO:0012501,GO:0012505,GO:0016020,GO:0016021,GO:0016175,GO:0016491,GO:0016651,GO:0016722,GO:0019725,GO:0030003,GO:0031090,GO:0031224,GO:0032956,GO:0032970,GO:0033043,GO:0042592,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0048471,GO:0048878,GO:0050664,GO:0050789,GO:0050794,GO:0050801,GO:0051128,GO:0051493,GO:0055065,GO:0055080,GO:0055082,GO:0055114,GO:0065007,GO:0065008,GO:0097038,GO:0098588,GO:0098771,GO:0098805,GO:0098852
Exons	4
EggNOG free text desc.	oxidoreductase activity, acting on NAD(P)H, oxygen as acceptor
EggNOG OGs	KOG0039@1,KOG0039@2759
EC	1.16.1.7
Cds size	825
COG Functional cat.	C
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
BRITE	ko00000,ko01000

Relationships

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1681462801.0134602-UTR-Ecto-sp13_S_contig15038:1712..1716	1681462801.0134602-UTR-Ecto-sp13_S_contig15038:1712..1716	Ectocarpus species13 EcNAP12_S_4_19m	UTR	Ecto-sp13_S_contig15038 1713..1716 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1681462801.024085-CDS-Ecto-sp13_S_contig15038:1716..1907	1681462801.024085-CDS-Ecto-sp13_S_contig15038:1716..1907	Ectocarpus species13 EcNAP12_S_4_19m	CDS	Ecto-sp13_S_contig15038 1717..1907 +
1681462801.033356-CDS-Ecto-sp13_S_contig15038:2198..2613	1681462801.033356-CDS-Ecto-sp13_S_contig15038:2198..2613	Ectocarpus species13 EcNAP12_S_4_19m	CDS	Ecto-sp13_S_contig15038 2199..2613 +
1681462801.0428412-CDS-Ecto-sp13_S_contig15038:3244..3327	1681462801.0428412-CDS-Ecto-sp13_S_contig15038:3244..3327	Ectocarpus species13 EcNAP12_S_4_19m	CDS	Ecto-sp13_S_contig15038 3245..3327 +
1681462801.0522652-CDS-Ecto-sp13_S_contig15038:3856..3992	1681462801.0522652-CDS-Ecto-sp13_S_contig15038:3856..3992	Ectocarpus species13 EcNAP12_S_4_19m	CDS	Ecto-sp13_S_contig15038 3857..3992 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp13_S_contig15038.3808.1	prot_Ecto-sp13_S_contig15038.3808.1	Ectocarpus species13 EcNAP12_S_4_19m	polypeptide	Ecto-sp13_S_contig15038 1717..3992 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at Ecto-sp13_S_contig15038:1713..3992+
coding sequence from alignment at Ecto-sp13_S_contig15038:1713..3992+

protein sequence of mRNA_Ecto-sp13_S_contig15038.3808.1

>prot_Ecto-sp13_S_contig15038.3808.1 ID=prot_Ecto-sp13_S_contig15038.3808.1|Name=mRNA_Ecto-sp13_S_contig15038.3808.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=275bp
MSVGEFATLLLWVGAMASHFWQGAYRSIQRYHDGTWPCPDDPTSKCYLDT
RGEPEPAETTGQNRLSVIAAYFGFAASCHFAVILIPVARDSKLWSAVGIP
FERAVLYHVIAGHLAFATMFLHAFLFLSSCVWENGWRHAWRVSTRQTNED
YGDVDLPMGWAAGLCALPMWITSVNYVRRRWYSLFKASHWLFIGVFIFGA
LHWDTNAIYFGGGLALYTMHVMSRLAAWKRWRYWNRWLKPAESASPTSLL
DVHTTENYTRLVLKNPKCDEPARGG

mRNA from alignment at Ecto-sp13_S_contig15038:1713..3992+

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_Ecto-sp13_S_contig15038.3808.1 ID=mRNA_Ecto-sp13_S_contig15038.3808.1|Name=mRNA_Ecto-sp13_S_contig15038.3808.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2280bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15038:1713..3992+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGATGAGCGTGGGAGAGTTCGCCACCTTGTTGCTGTGGGTAGGAGCGA
TGGCCTCTCACTTCTGGCAGGGTGCGTACCGCAGCATACAGAGGTACCAC
GACGGCACCTGGCCCTGCCCTGACGATCCCACCTCCAAGTGCTACCTCGA
CACCCGGGGCGAGCCCGAACCTGCCGAAACAACCGGCCAAAACAGGTACA
GGAGGCCTTTTCAGGTAACATAGGCGTTTGGTCACATGTGTTGTCCCTCA
TGTACTTACAAAAAGTTAATCGTTCATTCAGACCTGGTGCTTACCAGTCA
CGTACAGGGTATTCATGTTCATTTTTGTCCCTCTTCTCCACCTGATGAAA
TCTCGGCATGCACGAGCTGCCTTTCGTTCTCATATGCTAAAGATCGCCGT
CTCCTCTCCCTCTCACTACCCGCCCTACCTGGCACACGCGCCCACCCACC
CGCCCGCTCCGTCCGGTATACGCTACCCACATGCAGGCTGTCTGTCATCG
CCGCGTACTTCGGGTTCGCGGCCTCCTGCCACTTCGCCGTCATCCTCATT
CCCGTCGCCCGCGACAGCAAGCTCTGGTCGGCCGTCGGTATCCCGTTCGA
GCGCGCCGTCCTCTACCACGTTATCGCCGGACACTTGGCCTTCGCCACCA
TGTTCCTGCACGCCTTCCTCTTTCTGTCGTCGTGCGTGTGGGAGAACGGC
TGGAGACACGCGTGGAGGGTGTCCACCCGCCAAACCAATGAGGACTACGG
GGACGTGGACTTGCCCATGGGGTGGGCCGCGGGGCTGTGCGCGCTGCCCA
TGTGGATCACCTCCGTCAACTACGTCCGTCGCCGCTGGTACAGCCTGTTC
AAGGCCAGCCACTGGCTGTTCATCGGCGTCTTCATCTTCGGGGCCCTACA
CGTGAGTGTCCTGATATCGCCCGTTTCCCCTTTTGTTCCTTCGGCTAAAC
CGTTAATGCTCGAGAGTGAGTGTGCTCTTTTCAAAGCTTTGGAAGAACGT
TTAGTGCTGGTACCGCACCGGAAGATGATGAGCAGATTCCCCGGTGGGAT
GACCAGGTAGACCTCCTCTTGTTTTTCCGAACAAGCTTCTTCGTAGATTC
CGAGTCTTTTGCTTTCCTCAAAACGACGGATCACAGCAGTCCTGATGAAG
AATTGAGGCATGCATGGTGGCCCAACATCATTGCGCGCTGCCCAAGCTCC
CTTAAAGCTGCCAGTGAAGGCACGCCCTGAGGCGATAAGTTTTGAATCCT
TTTTGCCCTTGGCTTGTTTCAGCATTGATATCTTTCGGCACGCACGTCAT
GAAATTGAACACAGAGCCCAAAACGCAACGACGACTGCCTGTGTGCGTTT
CAACGCACACCCTTGCTAGAACGTCCATCCATATACTAAATCGCTTAAGT
CAGATACAATTTGGAGTTGATCGTCAAAGTTTCGCGAAAACGTCTCTTCC
CGCCGTGAGTGGTTTTCATTCTAGTCGTGCACCCCTCGTTGGTGTTCTCC
GTGATGTCCCTGCCGATGCTCTCCGAACCAAGTGGGACACCAACGCTATC
TACTTCGGCGGAGGTCTGGCATTGTACACCATGCACGTCATGTCAAGGCT
TGCCGCGTGGAAGAGGTGAGCATGTGCGGTGCTACTGCTACATGCGCCGT
TGGACGGCGTTTTGTTTTTTGTTCTTGGGTCTCTCGCTAAGCGATTGACC
TGACTCAGCTCCAACCGTGGGGGTTCTACGGGTGGAAGTTTCGTCGTTTG
GTTTTACAAGGGTTATGTCGGTATCGGTTTAACGAGACGGACACAAGCGG
GGCGGTAGTGCCTTGCGGCGGTAATGAGTTTGACGGAGGTGGTAGCACAA
AAATATGGCAAAACGTTTTTTGGCGGAAATGCCATATGGCAGAAATGGTT
TGGTGACGGTAGGCGGTTTGGCATTTGTCGGCGTTTAACATTTTGGCGGA
GGCGGTAAACCCAATAGCAGGCGGCCAACTGTTGCAGGAGGATGTGTATC
ACGGCGGCCGAATGCATAGAAGTTCCGACAAAATCGTGTTTGTGAGGCAC
CATGTGTGTGTATGTGTGAAGCTGCCCATCAACGAGATGCCCTGGCCGGA
CCACGTCTTTATGGGTCAATGTGCCACGTGTTTTCTGCCGTCAGGTGGCG
CTACTGGAACCGCTGGTTGAAACCTGCCGAGAGCGCCAGTCCCACGAGCC
TGCTCGACGTGCACACCACCGAGAATTACACCCGCCTAGTCCTCAAGAAC
CCCAAGTGCGACGAGCCAGCCAGAGGAGGG

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15038:1713..3992+

>mRNA_Ecto-sp13_S_contig15038.3808.1 ID=mRNA_Ecto-sp13_S_contig15038.3808.1|Name=mRNA_Ecto-sp13_S_contig15038.3808.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=825bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15038:1713..3992+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAGCGTGGGAGAGTTCGCCACCTTGTTGCTGTGGGTAGGAGCGATGGC
CTCTCACTTCTGGCAGGGTGCGTACCGCAGCATACAGAGGTACCACGACG
GCACCTGGCCCTGCCCTGACGATCCCACCTCCAAGTGCTACCTCGACACC
CGGGGCGAGCCCGAACCTGCCGAAACAACCGGCCAAAACAGGCTGTCTGT
CATCGCCGCGTACTTCGGGTTCGCGGCCTCCTGCCACTTCGCCGTCATCC
TCATTCCCGTCGCCCGCGACAGCAAGCTCTGGTCGGCCGTCGGTATCCCG
TTCGAGCGCGCCGTCCTCTACCACGTTATCGCCGGACACTTGGCCTTCGC
CACCATGTTCCTGCACGCCTTCCTCTTTCTGTCGTCGTGCGTGTGGGAGA
ACGGCTGGAGACACGCGTGGAGGGTGTCCACCCGCCAAACCAATGAGGAC
TACGGGGACGTGGACTTGCCCATGGGGTGGGCCGCGGGGCTGTGCGCGCT
GCCCATGTGGATCACCTCCGTCAACTACGTCCGTCGCCGCTGGTACAGCC
TGTTCAAGGCCAGCCACTGGCTGTTCATCGGCGTCTTCATCTTCGGGGCC
CTACACTGGGACACCAACGCTATCTACTTCGGCGGAGGTCTGGCATTGTA
CACCATGCACGTCATGTCAAGGCTTGCCGCGTGGAAGAGGTGGCGCTACT
GGAACCGCTGGTTGAAACCTGCCGAGAGCGCCAGTCCCACGAGCCTGCTC
GACGTGCACACCACCGAGAATTACACCCGCCTAGTCCTCAAGAACCCCAA
GTGCGACGAGCCAGCCAGAGGAGGG