mRNA_Ecto-sp13_S_contig14992.3778.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig14992.3778.1
Unique NamemRNA_Ecto-sp13_S_contig14992.3778.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig14992.3778.1 vs. uniprot
Match: D7FYC4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FYC4_ECTSI)

HSP 1 Score: 400 bits (1027), Expect = 1.230e-139
Identity = 226/239 (94.56%), Postives = 230/239 (96.23%), Query Frame = 1
Query:    1 MGELVLAKFAGQAVVNIAELILECVDSIGSIVRGMKENNRHASQLLEVVEAIEPPIRAIQKKGTTLSSSESLRQLLETVQEIRTVLDQYARTCIVARALKRKKIAKKFAWLGNSLTQKMHAVQLGDIADRLDDVPPSPAAAVPRAPAAGTSIGAPAKNVADVLKQAPTTVGQSTAVGAAAGGAGGALLAVVGAETLTAAAIANAALAGAVCTGIGGVAVGVGIVAYQAMNCAQPSQRSS 717
            MGELVLAKFAGQAVVNI ELILECVDSIGSIVRGMKENNRHASQLLE+VEAIEPPIRAIQKKGTTLS SESLRQLLETVQEIRTVLD+YARTCIVARALKRKKIAKKFAWLGN+LTQKMHAVQLGDIADRLDDVPP+PAAAV RAPAA TSIG PAKNVADVLKQAPTTVGQSTAVGAAAGGAGGALLAVVGAETLTAAAIANAALAGAVCTGI GVAVGVGIVAYQAMN AQ SQ SS
Sbjct:    1 MGELVLAKFAGQAVVNIVELILECVDSIGSIVRGMKENNRHASQLLEIVEAIEPPIRAIQKKGTTLSGSESLRQLLETVQEIRTVLDEYARTCIVARALKRKKIAKKFAWLGNNLTQKMHAVQLGDIADRLDDVPPAPAAAVQRAPAARTSIGVPAKNVADVLKQAPTTVGQSTAVGAAAGGAGGALLAVVGAETLTAAAIANAALAGAVCTGIVGVAVGVGIVAYQAMNFAQSSQTSS 239          
BLAST of mRNA_Ecto-sp13_S_contig14992.3778.1 vs. uniprot
Match: D8LQ15_ECTSI (Kinesin light chain-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQ15_ECTSI)

HSP 1 Score: 96.3 bits (238), Expect = 4.210e-19
Identity = 62/129 (48.06%), Postives = 81/129 (62.79%), Query Frame = 1
Query:   43 VNIAELILECVDSIGSIVRGMKENNRHASQLLEVVEAIEPPIRAIQKKGTTLSSSESLRQLLETVQEIRTVLDQYARTCIVARALKRKKIAKKFAWLGNSLTQKMHAVQLG---------DIADRLDDV 402
            V++A +IL  V  I  +  G+ EN+R A +LL+   AIE P+ A+   GT LSSSESLRQL  TV+ IR  L+ YART  + RALKRK  A KF  LG +LT+ MHA+QL          D +DRL+D+
Sbjct:    2 VDVAVVILRVVAEIHDVAEGINENHRQARRLLKRAMAIETPVLAVHN-GTILSSSESLRQLSATVENIRNFLEGYARTTKLNRALKRKSNAAKFTQLGVNLTEGMHALQLDVAVDAWANEDASDRLEDL 129          
BLAST of mRNA_Ecto-sp13_S_contig14992.3778.1 vs. uniprot
Match: A0A6H5JLJ5_9PHAE (Protein kinase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JLJ5_9PHAE)

HSP 1 Score: 89.7 bits (221), Expect = 7.160e-17
Identity = 59/128 (46.09%), Postives = 79/128 (61.72%), Query Frame = 1
Query:   46 NIAELILECVDSIGSIVRGMKENNRHASQLLEVVEAIEPPIRAIQKKGTTLSSSESLRQLLETVQEIRTVLDQYARTCIVARALKRKKIAKKFAWLGNSLTQKMHAVQLG---------DIADRLDDV 402
            ++A  +L  V  I ++   +KEN+R A +L + V AIEPP+ A+ KKG+ +SSSESL +LL  V+EIR  L+ YART    RALKRK  A  FA L   LT+ M A+QL          D +DRLDD+
Sbjct:    3 DVAVAVLRVVTEIRNVAERIKENDRQARRLSDRVTAIEPPVIAV-KKGSKMSSSESLHRLLFAVEEIRNFLEGYARTTNFNRALKRKANADSFAKLSVMLTEGMQALQLDIAVDAWATEDASDRLDDL 129          
BLAST of mRNA_Ecto-sp13_S_contig14992.3778.1 vs. uniprot
Match: D7G890_ECTSI (Protein kinase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G890_ECTSI)

HSP 1 Score: 84.7 bits (208), Expect = 3.590e-15
Identity = 55/128 (42.97%), Postives = 77/128 (60.16%), Query Frame = 1
Query:   46 NIAELILECVDSIGSIVRGMKENNRHASQLLEVVEAIEPPIRAIQKKGTTLSSSESLRQLLETVQEIRTVLDQYARTCIVARALKRKKIAKKFAWLGNSLTQKMHAVQLG---------DIADRLDDV 402
            ++A ++L  +  I    + +KEN+R A +L+E V+AIEP + A+ K+GT +SSSESLRQLL TV+ IR  L  YAR     RALKRK  A +F   G  + + + A+ L          D ADRLDD+
Sbjct:    3 DVAVIVLGVMAQIRDFAKDIKENDRQACRLIERVKAIEPAVLAV-KQGTNMSSSESLRQLLGTVEMIRNFLGGYARMSNFNRALKRKSNASEFTQFGIHINEGVQALSLDIAVDAWAKEDAADRLDDL 129          
BLAST of mRNA_Ecto-sp13_S_contig14992.3778.1 vs. uniprot
Match: D7G887_ECTSI (Protein kinase, TKL group n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G887_ECTSI)

HSP 1 Score: 81.6 bits (200), Expect = 2.090e-14
Identity = 54/128 (42.19%), Postives = 77/128 (60.16%), Query Frame = 1
Query:   46 NIAELILECVDSIGSIVRGMKENNRHASQLLEVVEAIEPPIRAIQKKGTTLSSSESLRQLLETVQEIRTVLDQYARTCIVARALKRKKIAKKFAWLGNSLTQKMHAVQLG---------DIADRLDDV 402
            ++A ++L  +  I  IV+ +KEN+R A +L+E V+AI+P + A+ K+GT  SSS+SL QLL TV  IR  L+ YA+     RALKRK  A +F   G  LT+ +  + L          D ADRLDD+
Sbjct:    3 DVAVIVLGVMAQIRDIVKDIKENDRQACRLIERVKAIQPAVLAV-KQGTNTSSSDSLSQLLATVDMIRNFLEGYAQMSKFNRALKRKANASEFTQFGVLLTEGVQTLSLDVAVDAWAKEDAADRLDDL 129          
BLAST of mRNA_Ecto-sp13_S_contig14992.3778.1 vs. uniprot
Match: A0A6H5JY67_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JY67_9PHAE)

HSP 1 Score: 79.0 bits (193), Expect = 3.840e-13
Identity = 50/129 (38.76%), Postives = 79/129 (61.24%), Query Frame = 1
Query:   43 VNIAELILECVDSIGSIVRGMKENNRHASQLLEVVEAIEPPIRAIQKKGTTLSSSESLRQLLETVQEIRTVLDQYARTCIVARALKRKKIAKKFAWLGNSLTQKMHAVQLG---------DIADRLDDV 402
            V++A ++L  +  +  +   + EN+R A +LL+   AIE P+ A+Q  GT+L+S++SLRQLL TV++IR  L++YAR     RAL R+  A +F  LG +LT+ M A+ L          D +DR +D+
Sbjct:    2 VDVAVVVLRVLAEVRDVAEDVMENDRQACRLLKRALAIEAPVLAVQN-GTSLTSADSLRQLLTTVEKIRNFLEEYARMTKFNRALNRRSNAAEFMRLGLNLTEGMQALHLEVAVDVWAKEDASDRQEDI 129          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14992.3778.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D7FYC4_ECTSI1.230e-13994.56Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D8LQ15_ECTSI4.210e-1948.06Kinesin light chain-like protein n=1 Tax=Ectocarpu... [more]
A0A6H5JLJ5_9PHAE7.160e-1746.09Protein kinase domain-containing protein n=2 Tax=E... [more]
D7G890_ECTSI3.590e-1542.97Protein kinase domain-containing protein n=1 Tax=E... [more]
D7G887_ECTSI2.090e-1442.19Protein kinase, TKL group n=1 Tax=Ectocarpus silic... [more]
A0A6H5JY67_9PHAE3.840e-1338.76Protein kinase domain-containing protein n=1 Tax=E... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14992contigEcto-sp13_S_contig14992:1522..2241 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score89.4
Seed ortholog evalue2.6e-15
Seed eggNOG ortholog2880.D7G890
Model size720
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.protein kinase activity
EggNOG OGsCOG0515@1,KOG0192@2759
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-09_001340.1
Cds size720
COG Functional cat.KLT
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462798.668356-CDS-Ecto-sp13_S_contig14992:1521..22411681462798.668356-CDS-Ecto-sp13_S_contig14992:1521..2241Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14992 1522..2241 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14992.3778.1prot_Ecto-sp13_S_contig14992.3778.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig14992 1522..2241 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig14992.3778.1

>prot_Ecto-sp13_S_contig14992.3778.1 ID=prot_Ecto-sp13_S_contig14992.3778.1|Name=mRNA_Ecto-sp13_S_contig14992.3778.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=240bp
MGELVLAKFAGQAVVNIAELILECVDSIGSIVRGMKENNRHASQLLEVVE
AIEPPIRAIQKKGTTLSSSESLRQLLETVQEIRTVLDQYARTCIVARALK
RKKIAKKFAWLGNSLTQKMHAVQLGDIADRLDDVPPSPAAAVPRAPAAGT
SIGAPAKNVADVLKQAPTTVGQSTAVGAAAGGAGGALLAVVGAETLTAAA
IANAALAGAVCTGIGGVAVGVGIVAYQAMNCAQPSQRSS*
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mRNA from alignment at Ecto-sp13_S_contig14992:1522..2241-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig14992.3778.1 ID=mRNA_Ecto-sp13_S_contig14992.3778.1|Name=mRNA_Ecto-sp13_S_contig14992.3778.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=720bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14992:1522..2241- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGGGAGCTCGTGCTGGCGAAGTTCGCGGGGCAAGCGGTGGTGAACAT CGCGGAGCTCATTCTGGAGTGTGTGGACTCGATCGGAAGTATTGTGAGAG GCATGAAGGAGAACAACCGTCACGCCTCTCAATTGTTGGAGGTAGTGGAG GCAATCGAGCCTCCCATACGCGCCATACAGAAGAAGGGCACCACTCTGTC TAGTTCCGAGTCGCTGCGCCAGCTGTTGGAGACCGTGCAGGAAATCCGAA CCGTCTTGGACCAGTACGCGCGGACGTGTATTGTCGCCCGCGCCTTGAAG AGGAAGAAGATCGCCAAGAAGTTCGCATGGCTCGGCAACAGCCTCACCCA GAAGATGCACGCGGTTCAGCTGGGCGACATAGCGGACCGTTTGGACGATG TGCCACCTTCACCGGCTGCCGCTGTGCCACGTGCACCGGCTGCCGGGACG AGCATTGGAGCGCCGGCGAAGAACGTGGCGGACGTGCTGAAACAGGCACC GACGACTGTAGGGCAATCCACCGCAGTAGGAGCAGCGGCCGGTGGGGCAG GCGGGGCTTTGTTGGCGGTGGTTGGTGCGGAGACCTTGACCGCGGCGGCA ATCGCGAACGCTGCCTTGGCAGGAGCGGTTTGTACGGGGATCGGTGGTGT AGCGGTTGGAGTGGGGATTGTGGCGTACCAAGCGATGAATTGTGCTCAGC CCAGCCAAAGGTCTTCCTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14992:1522..2241-

>mRNA_Ecto-sp13_S_contig14992.3778.1 ID=mRNA_Ecto-sp13_S_contig14992.3778.1|Name=mRNA_Ecto-sp13_S_contig14992.3778.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=720bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14992:1522..2241- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGGGAGCTCGTGCTGGCGAAGTTCGCGGGGCAAGCGGTGGTGAACAT
CGCGGAGCTCATTCTGGAGTGTGTGGACTCGATCGGAAGTATTGTGAGAG
GCATGAAGGAGAACAACCGTCACGCCTCTCAATTGTTGGAGGTAGTGGAG
GCAATCGAGCCTCCCATACGCGCCATACAGAAGAAGGGCACCACTCTGTC
TAGTTCCGAGTCGCTGCGCCAGCTGTTGGAGACCGTGCAGGAAATCCGAA
CCGTCTTGGACCAGTACGCGCGGACGTGTATTGTCGCCCGCGCCTTGAAG
AGGAAGAAGATCGCCAAGAAGTTCGCATGGCTCGGCAACAGCCTCACCCA
GAAGATGCACGCGGTTCAGCTGGGCGACATAGCGGACCGTTTGGACGATG
TGCCACCTTCACCGGCTGCCGCTGTGCCACGTGCACCGGCTGCCGGGACG
AGCATTGGAGCGCCGGCGAAGAACGTGGCGGACGTGCTGAAACAGGCACC
GACGACTGTAGGGCAATCCACCGCAGTAGGAGCAGCGGCCGGTGGGGCAG
GCGGGGCTTTGTTGGCGGTGGTTGGTGCGGAGACCTTGACCGCGGCGGCA
ATCGCGAACGCTGCCTTGGCAGGAGCGGTTTGTACGGGGATCGGTGGTGT
AGCGGTTGGAGTGGGGATTGTGGCGTACCAAGCGATGAATTGTGCTCAGC
CCAGCCAAAGGTCTTCCTGA
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