mRNA_Ecto-sp13_S_contig14977.3769.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig14977.3769.1
Unique NamemRNA_Ecto-sp13_S_contig14977.3769.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig14977.3769.1 vs. uniprot
Match: D8LB10_ECTSI (Carbonic anhydrase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LB10_ECTSI)

HSP 1 Score: 67.4 bits (163), Expect = 9.720e-10
Identity = 28/29 (96.55%), Postives = 29/29 (100.00%), Query Frame = -1 
Query:  391 DWYLGYPDCAGTKQTPINIAADVMGTATV 477
            DWYLGYPDCAGTKQTPINIAADVMGTAT+
Sbjct:   64 DWYLGYPDCAGTKQTPINIAADVMGTATM 92
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14977.3769.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LB10_ECTSI9.720e-1096.55Carbonic anhydrase n=2 Tax=Ectocarpus TaxID=2879 R... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14977contigEcto-sp13_S_contig14977:2164..2827 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size665
Hectar predicted targeting categoryother localisation
Exons1
Cds size663
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462798.0442395-CDS-Ecto-sp13_S_contig14977:2163..28261681462798.0442395-CDS-Ecto-sp13_S_contig14977:2163..2826Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14977 2164..2826 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14977.3769.1prot_Ecto-sp13_S_contig14977.3769.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig14977 2164..2826 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig14977.3769.1

>prot_Ecto-sp13_S_contig14977.3769.1 ID=prot_Ecto-sp13_S_contig14977.3769.1|Name=mRNA_Ecto-sp13_S_contig14977.3769.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=221bp
QYPQPPSARGPPKREGPPRHFQDFDFSAHPNPDGEVYDPSTPVPFNLRCL
YLVGFHLHTFIPAWPVTIWTPVSYNLLHEMSGHDRACDKRHQVNRHTPVH
FFVLRAQHRHAARLHQCIVPSVLCMSFNTTYGSRAHDICGDVDWRLLRPC
AVGVSQVPVTGRGFTGLGRTRRGITWGKEEKKSKREQYSAVNDQAHSRIP
KAAEKYHDNITICSQKHKSGT
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mRNA from alignment at Ecto-sp13_S_contig14977:2164..2827+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig14977.3769.1 ID=mRNA_Ecto-sp13_S_contig14977.3769.1|Name=mRNA_Ecto-sp13_S_contig14977.3769.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=664bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14977:2164..2827+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGTATCCGCAGCCCCCCTCCGCGCGGGGCCCTCCCAAACGCGAAGGTCC
TCCGCGTCACTTTCAGGATTTTGATTTCAGTGCACACCCAAACCCGGATG
GCGAGGTATATGATCCGTCCACGCCGGTTCCATTCAACCTGCGATGCTTG
TACCTAGTAGGTTTTCATCTACATACATTTATCCCTGCATGGCCTGTTAC
AATTTGGACGCCCGTTTCCTACAACCTGCTCCATGAAATGTCTGGTCATG
ATCGAGCATGCGACAAACGACACCAGGTTAACCGCCACACGCCTGTGCAC
TTCTTCGTTTTGCGTGCTCAACATCGACATGCTGCCCGCCTTCATCAATG
CATCGTTCCTAGCGTTCTATGCATGTCATTCAACACCACTTACGGTAGCC
GTGCCCATGACATCTGCGGCGATGTTGATTGGCGTCTGCTTCGTCCCTGC
GCAGTCGGGGTATCCCAAGTACCAGTCACTGGACGTGGGTTCACCGGATT
AGGAAGAACACGAAGAGGCATCACGTGGGGTAAGGAAGAGAAAAAATCGA
AACGCGAACAATATTCTGCTGTTAACGACCAAGCACATAGTCGCATCCCA
AAAGCAGCGGAGAAGTATCATGACAACATCACCATCTGCAGTCAAAAGCA
CAAATCAGGCACGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14977:2164..2827+

>mRNA_Ecto-sp13_S_contig14977.3769.1 ID=mRNA_Ecto-sp13_S_contig14977.3769.1|Name=mRNA_Ecto-sp13_S_contig14977.3769.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=663bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14977:2164..2827+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGTATCCGCAGCCCCCCTCCGCGCGGGGCCCTCCCAAACGCGAAGGTCC
TCCGCGTCACTTTCAGGATTTTGATTTCAGTGCACACCCAAACCCGGATG
GCGAGGTATATGATCCGTCCACGCCGGTTCCATTCAACCTGCGATGCTTG
TACCTAGTAGGTTTTCATCTACATACATTTATCCCTGCATGGCCTGTTAC
AATTTGGACGCCCGTTTCCTACAACCTGCTCCATGAAATGTCTGGTCATG
ATCGAGCATGCGACAAACGACACCAGGTTAACCGCCACACGCCTGTGCAC
TTCTTCGTTTTGCGTGCTCAACATCGACATGCTGCCCGCCTTCATCAATG
CATCGTTCCTAGCGTTCTATGCATGTCATTCAACACCACTTACGGTAGCC
GTGCCCATGACATCTGCGGCGATGTTGATTGGCGTCTGCTTCGTCCCTGC
GCAGTCGGGGTATCCCAAGTACCAGTCACTGGACGTGGGTTCACCGGATT
AGGAAGAACACGAAGAGGCATCACGTGGGGTAAGGAAGAGAAAAAATCGA
AACGCGAACAATATTCTGCTGTTAACGACCAAGCACATAGTCGCATCCCA
AAAGCAGCGGAGAAGTATCATGACAACATCACCATCTGCAGTCAAAAGCA
CAAATCAGGCACG
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