mRNA_Ecto-sp13_S_contig1493.3749.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1493.3749.1
Unique NamemRNA_Ecto-sp13_S_contig1493.3749.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1493.3749.1 vs. uniprot
Match: D7FLM1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLM1_ECTSI)

HSP 1 Score: 152 bits (383), Expect = 2.060e-45
Identity = 111/118 (94.07%), Postives = 112/118 (94.92%), Query Frame = 1 
Query:    1 MEGKEPDTLNKTLKAVGSAYDMAGRLGWKFKARAAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDEPNRGRPKSPQSWGSSSPNGLQRSARGKKLTGDAPAPGVAVPAGSGNCVVS 354
            M GKE DTLNKTLKAVGSAYDMAGRLGWKFKARA   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXDEP+RGRPKSPQSWGSSSPNGLQRSARGKKL GDAPAPGVAVPAGSGNCVVS
Sbjct:    1 MAGKEQDTLNKTLKAVGSAYDMAGRLGWKFKARAVAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDEPSRGRPKSPQSWGSSSPNGLQRSARGKKLAGDAPAPGVAVPAGSGNCVVS 118
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1493.3749.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FLM1_ECTSI2.060e-4594.07Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1493contigEcto-sp13_S_contig1493:10556..11359 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size357
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-17_000620.1
Cds size357
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462796.4618716-CDS-Ecto-sp13_S_contig1493:10555..105881681462796.4618716-CDS-Ecto-sp13_S_contig1493:10555..10588Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1493 10556..10588 +
1681462796.4781127-CDS-Ecto-sp13_S_contig1493:11035..113591681462796.4781127-CDS-Ecto-sp13_S_contig1493:11035..11359Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1493 11036..11359 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1493.3749.1prot_Ecto-sp13_S_contig1493.3749.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1493 10556..11359 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1493.3749.1

>prot_Ecto-sp13_S_contig1493.3749.1 ID=prot_Ecto-sp13_S_contig1493.3749.1|Name=mRNA_Ecto-sp13_S_contig1493.3749.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=119bp
MEGKEPDTLNKTLKAVGSAYDMAGRLGWKFKARAAGAAASSKSPARASAP
PGATDAAVAVAAAAAADEPNRGRPKSPQSWGSSSPNGLQRSARGKKLTGD
APAPGVAVPAGSGNCVVS*
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mRNA from alignment at Ecto-sp13_S_contig1493:10556..11359+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1493.3749.1 ID=mRNA_Ecto-sp13_S_contig1493.3749.1|Name=mRNA_Ecto-sp13_S_contig1493.3749.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=804bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1493:10556..11359+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGAAGGGAAAGAGCCGGACACCCTCAACAAGGTGGGCCAGCTTCAGCC
CACGCCCGAAGCCTTCTTCACGCGTAAACCAACCCAGTATGACCATAACA
ACATGACAATGCTGCAGCTGGCCATTCAGCTTTTCACTACGCGCCCCCTC
CAGTTTCCATTTGCCCGAATGATCGACAGCAAACTGCTGCCACGGGACGT
GTGCTCTTTACATCAACGAGCTGACGAGGATGAAAGATTGCGTAGGGTAA
GCGATCGCAAGCTATCAGTGACAGGTGATGTGGCGACTGCGGCCCGCTGT
TACGGCGACCTGTAGTTGTTGGTGCCGGAAGGTACTAGCTCCAATGCACA
TTGGGCATGGGATGAATGACGTCCTTGAACCTCACCCTTTGAGGGGAGAT
GAAATGTCGACCGTAAGTGTGTAGTGCAACCGAGAGAGACTTCCTTCCGT
TGTTTTTTCTATTGTGCAACCCCTCCCCAGACCCTAAAGGCAGTCGGGTC
CGCTTATGATATGGCGGGGCGACTAGGATGGAAATTTAAAGCGCGAGCGG
CGGGCGCAGCTGCCTCTTCGAAGTCTCCTGCACGAGCAAGCGCACCACCA
GGAGCCACAGACGCGGCGGTGGCAGTGGCCGCAGCAGCAGCTGCCGACGA
ACCGAACCGCGGCAGGCCGAAGTCGCCTCAATCTTGGGGATCAAGTAGTC
CGAATGGGCTACAAAGGTCGGCAAGAGGCAAAAAACTTACCGGGGACGCA
CCGGCACCGGGGGTGGCTGTCCCCGCAGGTAGCGGAAATTGTGTGGTGTC
GTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1493:10556..11359+

>mRNA_Ecto-sp13_S_contig1493.3749.1 ID=mRNA_Ecto-sp13_S_contig1493.3749.1|Name=mRNA_Ecto-sp13_S_contig1493.3749.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=357bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1493:10556..11359+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGAAGGGAAAGAGCCGGACACCCTCAACAAGACCCTAAAGGCAGTCGG
GTCCGCTTATGATATGGCGGGGCGACTAGGATGGAAATTTAAAGCGCGAG
CGGCGGGCGCAGCTGCCTCTTCGAAGTCTCCTGCACGAGCAAGCGCACCA
CCAGGAGCCACAGACGCGGCGGTGGCAGTGGCCGCAGCAGCAGCTGCCGA
CGAACCGAACCGCGGCAGGCCGAAGTCGCCTCAATCTTGGGGATCAAGTA
GTCCGAATGGGCTACAAAGGTCGGCAAGAGGCAAAAAACTTACCGGGGAC
GCACCGGCACCGGGGGTGGCTGTCCCCGCAGGTAGCGGAAATTGTGTGGT
GTCGTGA
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