mRNA_Ecto-sp13_S_contig14835.3685.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig14835.3685.1
Unique NamemRNA_Ecto-sp13_S_contig14835.3685.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig14835.3685.1 vs. uniprot
Match: A0A6H5L149_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L149_9PHAE)

HSP 1 Score: 142 bits (357), Expect = 2.860e-38
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 2 
Query:    2 WTSEEHDAFLRGVRRFKRNNWVGIATLLPTRTVLQIRTHAQKYYAKVDKGEPFPDEPYPSQHEAAAG 202
            WTSEEHDAFLRGVRRFKRNNWVGIATLLPTRTVLQIRTHAQKYYAKVDKGEPFPDEPYPSQHEAAAG
Sbjct:   10 WTSEEHDAFLRGVRRFKRNNWVGIATLLPTRTVLQIRTHAQKYYAKVDKGEPFPDEPYPSQHEAAAG 76
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BLAST of mRNA_Ecto-sp13_S_contig14835.3685.1 vs. uniprot
Match: D7FXJ4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXJ4_ECTSI)

HSP 1 Score: 117 bits (293), Expect = 3.240e-33
Identity = 55/56 (98.21%), Postives = 55/56 (98.21%), Query Frame = 2 
Query:    2 WTSEEHDAFLRGVRRFKRNNWVGIATLLPTRTVLQIRTHAQKYYAKVDKGEPFPDE 169
            WTSEEH AFLRGVRRFKRNNWVGIATLLPTRTVLQIRTHAQKYYAKVDKGEPFPDE
Sbjct:   15 WTSEEHHAFLRGVRRFKRNNWVGIATLLPTRTVLQIRTHAQKYYAKVDKGEPFPDE 70
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BLAST of mRNA_Ecto-sp13_S_contig14835.3685.1 vs. uniprot
Match: D7FXQ4_ECTSI (HTH myb-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXQ4_ECTSI)

HSP 1 Score: 102 bits (254), Expect = 1.510e-24
Identity = 46/67 (68.66%), Postives = 57/67 (85.07%), Query Frame = 2 
Query:    2 WTSEEHDAFLRGVRRFKRNNWVGIATLLPTRTVLQIRTHAQKYYAKVDKGEPFPDEPYPSQHEAAAG 202
            WT EEH  FLRGV  FKR++   +A++LPTRT+LQ+RTHAQKY+ KVDKGEPFP+EPYPSQ++ AAG
Sbjct:   10 WTHEEHAEFLRGVELFKRSDLEAVASMLPTRTILQVRTHAQKYFDKVDKGEPFPNEPYPSQYDRAAG 76
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BLAST of mRNA_Ecto-sp13_S_contig14835.3685.1 vs. uniprot
Match: A0A6H5KVV5_9PHAE (HTH myb-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVV5_9PHAE)

HSP 1 Score: 102 bits (253), Expect = 5.450e-24
Identity = 46/67 (68.66%), Postives = 56/67 (83.58%), Query Frame = 2 
Query:    2 WTSEEHDAFLRGVRRFKRNNWVGIATLLPTRTVLQIRTHAQKYYAKVDKGEPFPDEPYPSQHEAAAG 202
            WT EEH  FLRGV  FKR++   +A++LPTRT+LQ+RTHAQKY+ KVDKGEPFP EPYPSQ++ AAG
Sbjct:   10 WTHEEHAVFLRGVELFKRSDLEAVASMLPTRTILQVRTHAQKYFDKVDKGEPFPTEPYPSQYDRAAG 76
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BLAST of mRNA_Ecto-sp13_S_contig14835.3685.1 vs. uniprot
Match: D8LPL1_ECTSI (HTH myb-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPL1_ECTSI)

HSP 1 Score: 79.3 bits (194), Expect = 3.700e-17
Identity = 37/67 (55.22%), Postives = 52/67 (77.61%), Query Frame = 2 
Query:    2 WTSEEHDAFLRGVRRFKRNNWVGIATLLPTRTVLQIRTHAQKYYAKVDKGEPFPDEPYPSQHEAAAG 202
            WT EEH+AFL G+ + + N+      L+PTR+ LQIRTHAQKY+ K+++GE FP +PYPSQ++AA+G
Sbjct:   11 WTREEHEAFLSGLWQHESNSHA----LVPTRSALQIRTHAQKYFDKIERGEKFPAQPYPSQYDAASG 73
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BLAST of mRNA_Ecto-sp13_S_contig14835.3685.1 vs. uniprot
Match: A0A6H5JC35_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC35_9PHAE)

HSP 1 Score: 73.9 bits (180), Expect = 7.950e-14
Identity = 35/60 (58.33%), Postives = 45/60 (75.00%), Query Frame = 2 
Query:    2 WTSEEHDAFLRGVRRFKRNNWVGIATLLPTRTVLQIRTHAQKYYAKVDKGEPFPDEPYPS 181
            WT EEHDAFL+G+    +N W  IA ++ TR+ +Q+RTH QKY+ KVDKGE FP+EPY S
Sbjct:   10 WTKEEHDAFLQGLVLHGKN-WDLIAPIVKTRSAVQVRTHGQKYFKKVDKGERFPEEPYES 68
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BLAST of mRNA_Ecto-sp13_S_contig14835.3685.1 vs. uniprot
Match: A0A8K1FKM6_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FKM6_PYTOL)

HSP 1 Score: 66.2 bits (160), Expect = 4.120e-11
Identity = 30/51 (58.82%), Postives = 37/51 (72.55%), Query Frame = 2 
Query:    2 WTSEEHDAFLRGVRRFKRNNWVGIATLLPTRTVLQIRTHAQKYYAKVDKGE 154
            WT  EH  FL+G+ +F    W  IATL+ TRTV+QIRTHAQKYY K++K E
Sbjct:  168 WTEAEHKLFLKGLEQFPYRAWKKIATLIKTRTVVQIRTHAQKYYQKLEKEE 218
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BLAST of mRNA_Ecto-sp13_S_contig14835.3685.1 vs. uniprot
Match: A0A662Y4X9_9STRA (Uncharacterized protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662Y4X9_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 7.520e-11
Identity = 30/51 (58.82%), Postives = 36/51 (70.59%), Query Frame = 2 
Query:    2 WTSEEHDAFLRGVRRFKRNNWVGIATLLPTRTVLQIRTHAQKYYAKVDKGE 154
            WT  EH  FL+G+  F    W  IATL+ TRTV+QIRTHAQKYY K++K E
Sbjct:  117 WTDAEHQLFLQGLETFPYRAWKKIATLIKTRTVVQIRTHAQKYYQKLEKEE 167
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BLAST of mRNA_Ecto-sp13_S_contig14835.3685.1 vs. uniprot
Match: A0A024G907_9STRA (Uncharacterized protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024G907_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 7.600e-11
Identity = 30/51 (58.82%), Postives = 36/51 (70.59%), Query Frame = 2 
Query:    2 WTSEEHDAFLRGVRRFKRNNWVGIATLLPTRTVLQIRTHAQKYYAKVDKGE 154
            WT  EH  FL+G+  F    W  IATL+ TRTV+QIRTHAQKYY K++K E
Sbjct:  165 WTEAEHKLFLKGLETFPYRAWKKIATLIKTRTVVQIRTHAQKYYQKLEKEE 215
[Close]
BLAST of mRNA_Ecto-sp13_S_contig14835.3685.1 vs. uniprot
Match: F0WBY9_9STRA (Uncharacterized protein AlNc14C54G4176 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WBY9_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 7.600e-11
Identity = 30/51 (58.82%), Postives = 36/51 (70.59%), Query Frame = 2 
Query:    2 WTSEEHDAFLRGVRRFKRNNWVGIATLLPTRTVLQIRTHAQKYYAKVDKGE 154
            WT  EH  FL+G+  F    W  IATL+ TRTV+QIRTHAQKYY K++K E
Sbjct:  165 WTEAEHKLFLKGLETFPYRAWKKIATLIKTRTVVQIRTHAQKYYQKLEKEE 215
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14835.3685.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L149_9PHAE2.860e-38100.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FXJ4_ECTSI3.240e-3398.21Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FXQ4_ECTSI1.510e-2468.66HTH myb-type domain-containing protein n=1 Tax=Ect... [more]
A0A6H5KVV5_9PHAE5.450e-2468.66HTH myb-type domain-containing protein n=1 Tax=Ect... [more]
D8LPL1_ECTSI3.700e-1755.22HTH myb-type domain-containing protein n=1 Tax=Ect... [more]
A0A6H5JC35_9PHAE7.950e-1458.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A8K1FKM6_PYTOL4.120e-1158.82Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A662Y4X9_9STRA7.520e-1158.82Uncharacterized protein n=2 Tax=Nothophytophthora ... [more]
A0A024G907_9STRA7.600e-1158.82Uncharacterized protein n=1 Tax=Albugo candida Tax... [more]
F0WBY9_9STRA7.600e-1158.82Uncharacterized protein AlNc14C54G4176 n=1 Tax=Alb... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14835contigEcto-sp13_S_contig14835:1279..2832 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size204
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-28_001920.1
Cds size204
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462791.6869636-CDS-Ecto-sp13_S_contig14835:1278..14471681462791.6869636-CDS-Ecto-sp13_S_contig14835:1278..1447Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14835 1279..1447 +
1681462791.69544-CDS-Ecto-sp13_S_contig14835:2797..28321681462791.69544-CDS-Ecto-sp13_S_contig14835:2797..2832Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14835 2798..2832 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14835.3685.1prot_Ecto-sp13_S_contig14835.3685.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig14835 1279..2832 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig14835.3685.1

>prot_Ecto-sp13_S_contig14835.3685.1 ID=prot_Ecto-sp13_S_contig14835.3685.1|Name=mRNA_Ecto-sp13_S_contig14835.3685.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=68bp
MDVRGTRRFSARGPPLQAQQLGGHSHPTAHSHRTADQDARPEVLRQGRQG
GAIPRRAIPQSARSRRR*
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mRNA from alignment at Ecto-sp13_S_contig14835:1279..2832+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig14835.3685.1 ID=mRNA_Ecto-sp13_S_contig14835.3685.1|Name=mRNA_Ecto-sp13_S_contig14835.3685.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1554bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14835:1279..2832+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGACGTCAGAGGAACACGACGCTTTTCTGCGCGGGGTCCGCCGCTTCA
AGCGCAACAACTGGGTGGGCATAGCCACCCTACTGCCCACTCGCACCGTA
CTGCAGATCAGGACGCACGCCCAGAAGTACTACGCCAAGGTCGACAAGGG
GGAGCCATTCCCAGACGAGGTTTGAATCGGTGGGCGCGCATCCCGCGTCA
TAATTTAGCAGCTCTCTTTGTTCGTGGCACGGGTACCTAAAAGGCACGAA
GGGTTGCATGCGTCTCGAGAGTATTTGGTTGTTGAGGTTTTGCGTGGAAC
AGGAGATTGTTCGAGATTAGAGAACATGTGTTTCGGCTCTTCCAGTCCGT
CAAGGTCAACATGGCCCGGGGTCTGCGTGCATACATGCGGTTGCATGTAA
ACCAACTTTTATTCTTTTTCACCTTTTCGGATACATGCTGCTGTACGCAG
TACGTACACGAACAACACAGCAACTACAGACAGACGCCAAAGCCCGAGAA
TACAAACCGATTTCGATGCGCATGCATGCGCTATGCTACAGTAAAGAGTA
CGAAGTAGGCACCCAGAGACGCTTGTGAACGCCCGGGTAGAGCGCATTAA
CCTTTCGGGGGTAAACGGAACGCCATGGAGGAGTTGTCGATTTAAAGCAT
ACATGCGTACTCCGCATGTATGTACGGGATAGACACCTCGAGGCGAAGTG
ATCCCCGAGGGCATTGTTAGCGTTTTCAGTTCTGTTTGGGAAATTTCACG
GACACAAAATGGATCTGCGTGCACACACTCCTGTTGTTGTTGTGGGCCTG
TAGCCAACCCACGATGTCGAGAGCGTAAACATCAATCCAGACACGGGAAA
GTAAGGGCAACCGGGAATGCTTGCGCCAATGCGACGGTGGTCACCTCCAA
CGGTTGGAACATGCCAAGAGAACAAGCGCAGGAGTGTCGCTTGGTGCTCG
GTGATGCAAGCAGTCGCCTGCGACATCTTAACATTGTGTGTTTGCGGTAG
CGGGGGGATGTTCAAGAGCATGTCGGGGTCTCAACATTGCAGAAAAACAA
ACAGCCACAACATCAGCAGCGACATCTGTGCCAGAATGCGTGCTTTGAAT
TTCCTCTTCGATAGCCCTCCCGGGGGAACTTACACACAGAACATCCCCAG
GGCATTCTTCAAGTTTTTTTTGCTTCACCGGTGCTTTCTTTTGGGGCGGG
GAAGCGATCTGATGCTGTTATTGCGGATGCACAATCGTGCAATTTATCAA
GGAAAACCTGGCTTGAAAGCCACACCCGGGGTTTCCGTGTTTTCGAGTCC
CTCGGAGGTGGAAACCCAGTTATACTGTGCCCTTGTTTAGTATTTGGGGT
GGGGTTCCATCTCAGATTCTGCAGCAGAGCTTTATACGCTACTGATCCGA
CTCGAGCGGGCGCACCTCCCATGTCTCTCTCTCACTGCACTGAAGTAACT
GCCGTTTACTCCCGCTCGTCGTGTATGCCTCCGCCGCGCTTCTCTCTTAT
CGACTTGCCTGCCCCTCAGCCATACCCCAGTCAGCACGAAGCCGCCGCAG
GTAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14835:1279..2832+

>mRNA_Ecto-sp13_S_contig14835.3685.1 ID=mRNA_Ecto-sp13_S_contig14835.3685.1|Name=mRNA_Ecto-sp13_S_contig14835.3685.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=204bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14835:1279..2832+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGACGTCAGAGGAACACGACGCTTTTCTGCGCGGGGTCCGCCGCTTCA
AGCGCAACAACTGGGTGGGCATAGCCACCCTACTGCCCACTCGCACCGTA
CTGCAGATCAGGACGCACGCCCAGAAGTACTACGCCAAGGTCGACAAGGG
GGAGCCATTCCCAGACGAGCCATACCCCAGTCAGCACGAAGCCGCCGCAG
GTAA
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