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Homology
BLAST of mRNA_Ecto-sp13_S_contig148.3660.1 vs. uniprot
Match: D7FNM3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNM3_ECTSI) HSP 1 Score: 549 bits (1415), Expect = 7.790e-189 Identity = 282/326 (86.50%), Postives = 294/326 (90.18%), Query Frame = 1
Query: 1 MVKSSDVNHQDHKPRTKYFLTTGGRVVRVNHDPDAGNRLIVPTEDELKTILYDQTDARNRGNGHRPRDNIDFVALHANRRPRRKGSKKGVGNNQRTYEDNCSPVVVNGEEFCLSDRSDIRRERGVKSDRCLRLKVNRPSPKHHDFGEEDDVSLFLDSFSASEMPGQHPAAAVETAVTRQSSPTSLCPDDGVLEGQARKAEAVVLDTTQTTLEMSRPLAKVDLYSILAKAPPAEPRSTAFHRPVGGTGRSVDPTMSNKAGMKRHKREQGSLRRLARSVVVGGDERPAYETALRLTPREEVGGYLKRDPLGDEVAELNSKLQESLRRV 978
M+KS DVNHQDHKPRTKYFLT GGRVVRVNHDPDAGNR IVPTEDELKTILYDQTDARNRGNGHR RDNIDFVALHANRRPRRKGSK GV NNQRTYE++ SPV VNGE DR IRRERG+KSDRCLR K NRPSPKHHD GEE+DVSLFLDSFSASEMPGQHPAAAV+TAVT QS PTSLC DDGVLEGQARKAEAVV DTTQTT+EMS+PLAK+DLYSILAKAPP PRSTA HRPV G G SVDPTMSNKAGMKRHKREQGSLRRLA SVVVGGDERPA+ETALRL PREEVGGYLKRDPLGDEVAEL +KLQESLR +
Sbjct: 1 MLKSFDVNHQDHKPRTKYFLTVGGRVVRVNHDPDAGNRQIVPTEDELKTILYDQTDARNRGNGHRRRDNIDFVALHANRRPRRKGSKNGVENNQRTYENSNSPVGVNGE-----DRPHIRRERGIKSDRCLRPKANRPSPKHHDSGEEEDVSLFLDSFSASEMPGQHPAAAVQTAVTLQSPPTSLCLDDGVLEGQARKAEAVVADTTQTTMEMSKPLAKIDLYSILAKAPPVAPRSTASHRPVDGIGCSVDPTMSNKAGMKRHKREQGSLRRLASSVVVGGDERPAFETALRLNPREEVGGYLKRDPLGDEVAELTAKLQESLRSI 321
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Stop | 0 |
| Start | 1 |
| Model size | 2196 |
| Hectar predicted targeting category | other localisation |
| Exons | 7 |
| Cds size | 2196 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1681462789.4367282-CDS-Ecto-sp13_S_contig148:17091..17253 | 1681462789.4367282-CDS-Ecto-sp13_S_contig148:17091..17253 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig148 17092..17253 + |
| 1681462789.4619532-CDS-Ecto-sp13_S_contig148:17839..18334 | 1681462789.4619532-CDS-Ecto-sp13_S_contig148:17839..18334 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig148 17840..18334 + |
| 1681462789.4773448-CDS-Ecto-sp13_S_contig148:18690..19007 | 1681462789.4773448-CDS-Ecto-sp13_S_contig148:18690..19007 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig148 18691..19007 + |
| 1681462789.4880419-CDS-Ecto-sp13_S_contig148:19433..20418 | 1681462789.4880419-CDS-Ecto-sp13_S_contig148:19433..20418 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig148 19434..20418 + |
| 1681462789.5001056-CDS-Ecto-sp13_S_contig148:20768..20864 | 1681462789.5001056-CDS-Ecto-sp13_S_contig148:20768..20864 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig148 20769..20864 + |
| 1681462789.5098932-CDS-Ecto-sp13_S_contig148:21167..21247 | 1681462789.5098932-CDS-Ecto-sp13_S_contig148:21167..21247 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig148 21168..21247 + |
| 1681462789.5221164-CDS-Ecto-sp13_S_contig148:21641..21702 | 1681462789.5221164-CDS-Ecto-sp13_S_contig148:21641..21702 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig148 21642..21702 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig148.3660.1 >prot_Ecto-sp13_S_contig148.3660.1 ID=prot_Ecto-sp13_S_contig148.3660.1|Name=mRNA_Ecto-sp13_S_contig148.3660.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=732bp
MVKSSDVNHQDHKPRTKYFLTTGGRVVRVNHDPDAGNRLIVPTEDELKTI LYDQTDARNRGNGHRPRDNIDFVALHANRRPRRKGSKKGVGNNQRTYEDN CSPVVVNGEEFCLSDRSDIRRERGVKSDRCLRLKVNRPSPKHHDFGEEDD VSLFLDSFSASEMPGQHPAAAVETAVTRQSSPTSLCPDDGVLEGQARKAE AVVLDTTQTTLEMSRPLAKVDLYSILAKAPPAEPRSTAFHRPVGGTGRSV DPTMSNKAGMKRHKREQGSLRRLARSVVVGGDERPAYETALRLTPREEVG GYLKRDPLGDEVAELNSKLQESLRRVTQDTQRHKRRQQVGVARHYAAILG DRTRPLNIAKNMPTHGRDEDNIDDNNDTDATSSHDSRRYRATTDDRDNGR AADVFQRSCRRNRGRIEDFAKSNRTCSSTRISTRHSSGKQADSETSPTRG GRDSTSGAGLEVGRAGVRWLPDDEAELHSPVTGQPIGCRGKHDRQAPQQE QPQDDVLDSGTTDSDYGEEPFESANGAPESVSGSVAAAPSVVTTEGGVLG MNLDVAMESKEHVGRKNGDGVDSEREDYYLGHEATGEDRVLLSKDGAPPS SAAAAASTAAAAAAALRIEACWRGFVGRCFAKRLLRSGLLDALRSLGGGK VSKVVSLTDVEREDRRGLNRALRLATQSRRQLPPQAHIFECVRFVKSLQR RRARVVEARKRRWIAERRQRRESAKNVPSGLL back to topmRNA from alignment at Ecto-sp13_S_contig148:17092..21702+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_Ecto-sp13_S_contig148.3660.1 ID=mRNA_Ecto-sp13_S_contig148.3660.1|Name=mRNA_Ecto-sp13_S_contig148.3660.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4611bp|location=Sequence derived from alignment at Ecto-sp13_S_contig148:17092..21702+ (Ectocarpus species13 EcNAP12_S_4_19m) ATGGTGAAATCATCCGACGTCAACCACCAGGACCACAAGCCCCGGACGAA
GTATTTTCTAACGACTGGTGGGCGGGTGGTGAGAGTCAACCATGACCCTG
ACGCTGGCAATAGGCTAATCGTGCCTACCGAGGACGAGCTAAAGACAATT
CTCTATGACCAGGTGAGTAATGGACGGCATACGCAACAGATCATTTCAAG
ACATATTTCAATCGTCTGTCTCCGTATCCTCCATAGTCCAGCCTGCACCT
CACGATGCATGCAGCACTTCAAAAGTGGGCGGTTGCCGTCTTCACAAATG
TGCTACCCACCCCCCAAACAACTCGGTACCTGTAACGCGTGCACCAACGG
AGCCCGAGCCATGTATCTATGGCTCTGTCGTAAGTATCATTTGCTCTACC
AGGCTCTACTGTTGCTTTTCTGACATCTCAAACGGGCTGAATTACATAGA
ACCTCGGGATCAGAACGGTTGTTACGTGAAGACAACGTCAACCACAACCA
CAACCACAACCACAACAACAACAACAACAACGACGACGATGATGACAAGT
TATCGTCTTTCGTTGACGTCGTGATTCAGAAGTCCATGTCCAAACGAAAC
AAGAGGAATTCTAGAGAGTAGATGCGCAACTCGAACGAATCACCAACCGT
GAGTGCATGTAAAATCTTGGAGATACACCACAACAATGTAAAGCGAACAT
CTCCTTGTGATGTGATGTGTGCCCTCTTCGTTGGCCTTTTCCCCTCAGAC
GGATGCTAGGAATAGGGGGAATGGACACCGACCACGTGACAACATTGACT
TTGTGGCCCTTCATGCTAACCGCAGACCAAGACGAAAAGGCAGCAAAAAG
GGGGTCGGAAACAACCAGCGCACATACGAGGACAACTGCAGTCCGGTTGT
TGTAAATGGTGAAGAGTTTTGTTTGTCAGACCGATCCGACATCCGGCGGG
AAAGGGGCGTAAAGTCCGACCGATGTCTCCGCCTGAAAGTGAACAGACCA
AGTCCGAAGCACCACGATTTTGGAGAAGAGGACGATGTCTCCTTATTCCT
GGACTCGTTCTCCGCTTCCGAGATGCCAGGACAGCATCCCGCAGCGGCAG
TAGAGACGGCAGTTACTCGCCAATCGTCCCCGACGTCGCTCTGTCCGGAC
GACGGTGTGCTCGAGGGGCAGGCGCGTAAAGCTGAAGCTGTTGTCCTCGA
CACCACGCAAACCACGCTGGAGATGAGTAGGCCACTCGCAAAGGTAAGAG
GCAAGCATGCTTTCATTAAATGCCAAGGGTGGAGACCAAAAGCTTCACCC
AGTGATCTTGTGCAATGGAATCAGACTGCCGTTAGATCTTGGCGGGTTGG
CTGTTACTTCGTTGCCATTCGTGTTAGTGAAAGACCTCTGGCTCCTCCGC
AACTGGTCCTCGAGCTCTTTGTATATGCATCTATCTCAAGGAAGAGCTTC
CTGGCACTGTGGGGCAATAAGGACGTCACGGCTCAAATCTACCTCCCTGC
CGAATAACGTGGTTCCTATCGTGTCCAATGAACCGTATTTCAACAAATGC
TCAGTCCATGGCTGACCCCCCTCCCCCCCCCTACGGCTGCTACTCCCAGG
TTGATCTGTACAGCATCCTAGCCAAGGCTCCTCCTGCCGAGCCACGTAGC
ACAGCATTCCACCGTCCGGTCGGCGGGACCGGCCGCAGCGTTGACCCAAC
CATGTCGAACAAGGCCGGAATGAAGCGACACAAGCGAGAGCAAGGTTCCT
TGCGCAGACTCGCGAGGAGTGTCGTCGTCGGGGGAGACGAACGACCAGCG
TATGAAACAGCACTGCGGTTGACCCCGCGAGAGGAGGTGGGCGGATACCT
CAAGAGAGACCCGCTGGGAGACGAAGTCGCCGAGTTAAACTCCAAGCTTC
AGGAAAGCCTTCGAAGGTGAGGAGTGGGGAAAACCGAGAGCAGGTGCGGT
CGTGGCGAGCATGTTTTGTTGGGTATCTCTAGCAGCCGCCGTCGTCGGTG
TATCGAACGCGGGCGGTTGGATTACCCAGATGATGTCGATAAATGTGCTT
GGTTTTCGGTATTTCTTGGAAGTACAATGCTCAATGGCCGTGCCATGCTA
TGACCCACGGCATCAAGCGCCTCATTGAGTGCGTTTGGTTTGATGTTGCT
ATCTACGTTTGTCGTCGTAGTTCTGGTAGAGCGCCCCAGTCAAGCCTCGC
GCTAAGCCCGGTGGGAGAAGCAATTGTTCGGTCTGCGTCGGTATGTGTTT
GTGCCGACCTTTCTCGGTTGGTTCAACGAAGAAAAGTAACACAGTTTCTT
TCGCTTTCCGCCTACATGTCCCAATCCCCCCCGTCCCGTCAGGGTCACAC
AAGACACGCAGAGACATAAACGTAGGCAACAAGTCGGCGTAGCCCGGCAT
TACGCGGCCATCCTTGGGGACAGGACCCGACCGCTTAACATAGCCAAGAA
TATGCCAACGCATGGCCGTGATGAGGATAACATTGACGACAACAACGACA
CTGATGCTACATCATCGCATGATTCTCGTCGTTATCGAGCAACAACAGAC
GATCGTGATAACGGTCGCGCGGCCGACGTCTTTCAGCGCTCGTGCCGTCG
TAACCGAGGACGAATAGAAGACTTCGCAAAGAGTAATCGAACATGCAGCA
GCACAAGAATATCAACCAGGCATAGCAGCGGAAAGCAAGCCGATTCCGAA
ACCAGTCCAACAAGGGGGGGTCGCGATTCTACCTCTGGGGCAGGTCTTGA
GGTCGGTCGGGCTGGCGTGAGATGGCTGCCTGATGATGAGGCGGAATTGC
ATTCTCCCGTGACGGGGCAACCAATCGGCTGCAGAGGAAAACATGACCGT
CAGGCCCCGCAACAGGAACAACCCCAGGACGATGTTCTCGATTCCGGGAC
CACAGACAGCGACTATGGGGAAGAACCGTTCGAATCGGCAAACGGTGCGC
CGGAAAGCGTTTCGGGGTCTGTGGCAGCGGCCCCGAGCGTCGTCACCACA
GAAGGAGGCGTTTTAGGGATGAACTTGGATGTCGCGATGGAAAGCAAGGA
ACACGTAGGCCGAAAAAATGGTGATGGTGTCGACAGCGAGCGAGAAGACT
ATTATTTGGGCCACGAGGCCACGGGGGAGGACCGGGTACTGCTGTCCAAA
GACGGTGCTCCTCCTTCTTCTGCTGCTGCTGCTGCTTCTACTGCTGCTGC
TGCTGCTGCTGCGCTGAGGATCGAGGCTTGTTGGCGAGGTTTCGTCGGAA
GATGTTTCGCCAAACGCTTGCTACGATCTGGACTTCTCGATGCTCTACGC
AGTCTCGGCGGTGGGAAGGTTTCCAAGGTGAGACATGCAGAGTTTGCAGA
GACGTAGATCGACTGGTCACTCTGCCAAGTATCTCCTACTGAGGTACGGG
CTGTGCCCTCCCTACGCATCGAGCTTGCGCGACATTCTTCGAAGGCATGG
GTCCACGTAAAGCTCTCTGACAAACGCGGAGCCATCCGGCGACACCCGAT
GCGCTCTGTGGAGTTCAGGCGTTATGCAGACATCAAGGTTTCGCAAAAAT
GGAGGAGAGCGGAATGAGATATGATACGGCACGCTATAATATTCGTCGCT
GGCCATCCGACGGACCTTGTCCAACCGCTCGTGGTCGTTTCGTGGCTTTT
CGTGTGGTGTGAATTGGGGGAATGAAGGTCGTGTCGCTGACAGACGTTGA
AAGAGAAGATCGACGGGGCCTCAATCGTGCTCTTCGACTGGCAACCCAAT
CCCGGCGTCAACTACCGCCGCAGGTACTTGAGTGACAACGAGGGTGTGCC
TAGGTAGCTCTGGACCGAAATCTTTTCCGTTTTGTCTGCACTGACACACA
GCAGTAAGAAAAACGTATGCGTGTCCATGCCTTATATGGTGTCTTATCAG
TCTTGCAGAATATTCCAGACGGTGTAGTTGAAGTACACGACTTCTAGACT
TTTGTTCGCTCGTTGTACCCACCCAATATTTTATTTGGATTCCCCCATCT
CCGCGACACTTGTTCATGCCATACCCATATTTCTTCGTTTCTTCCTACCG
ACTGCGGCTCTCGTGTGGTTCAAAAGGCGCATATCTTCGAGTGTGTTCGC
TTCGTGAAGTCATTGCAGAGGCGGCGTGCCCGCGTTGTGGAAGCGAGGAA
GAGGAGGTGGGATCCGGAAAAGATTGAGACGGGCGTGCGTTTTTTCTCGA
GCTTCGTTTAACCGCTTCGTGAAGGGTGGCACCATTCGCGATGAAAACCA
TTTCCCGAGCTAGTAGCTCAGAATCTCCCTGGCTGCAACTACACGCAGTT
GCAGCTCGGTCCTAAAGTCAACGACAGTTCGATGCAGGCGCTTCGAAATA
TCTGTCGAGTGAAAAAGACACCTCCAAGACCTATTTCCAAGGTACACGAA
CGTAGTTGCATGCAACCATCTTGTAGATGGAGGCATGGAGCCCACTGTTG
GACAATGTGACGGAGTTCATCCCGCAGTGATTTGCCCCGCTTCCATGCCC
CTCATTGTATTCCCTCTCTTGTAATCTCTCGCGGGGCCCCTTTCTGGTAG
ATGGATAGCGGAGAGGCGTCAGAGAAGGGAGAGCGCCAAGAACGTTCCTT
CCGGGCTTCTT back to topCoding sequence (CDS) from alignment at Ecto-sp13_S_contig148:17092..21702+ >mRNA_Ecto-sp13_S_contig148.3660.1 ID=mRNA_Ecto-sp13_S_contig148.3660.1|Name=mRNA_Ecto-sp13_S_contig148.3660.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=2196bp|location=Sequence derived from alignment at Ecto-sp13_S_contig148:17092..21702+ (Ectocarpus species13 EcNAP12_S_4_19m) ATGGTGAAATCATCCGACGTCAACCACCAGGACCACAAGCCCCGGACGAA GTATTTTCTAACGACTGGTGGGCGGGTGGTGAGAGTCAACCATGACCCTG ACGCTGGCAATAGGCTAATCGTGCCTACCGAGGACGAGCTAAAGACAATT CTCTATGACCAGACGGATGCTAGGAATAGGGGGAATGGACACCGACCACG TGACAACATTGACTTTGTGGCCCTTCATGCTAACCGCAGACCAAGACGAA AAGGCAGCAAAAAGGGGGTCGGAAACAACCAGCGCACATACGAGGACAAC TGCAGTCCGGTTGTTGTAAATGGTGAAGAGTTTTGTTTGTCAGACCGATC CGACATCCGGCGGGAAAGGGGCGTAAAGTCCGACCGATGTCTCCGCCTGA AAGTGAACAGACCAAGTCCGAAGCACCACGATTTTGGAGAAGAGGACGAT GTCTCCTTATTCCTGGACTCGTTCTCCGCTTCCGAGATGCCAGGACAGCA TCCCGCAGCGGCAGTAGAGACGGCAGTTACTCGCCAATCGTCCCCGACGT CGCTCTGTCCGGACGACGGTGTGCTCGAGGGGCAGGCGCGTAAAGCTGAA GCTGTTGTCCTCGACACCACGCAAACCACGCTGGAGATGAGTAGGCCACT CGCAAAGGTTGATCTGTACAGCATCCTAGCCAAGGCTCCTCCTGCCGAGC CACGTAGCACAGCATTCCACCGTCCGGTCGGCGGGACCGGCCGCAGCGTT GACCCAACCATGTCGAACAAGGCCGGAATGAAGCGACACAAGCGAGAGCA AGGTTCCTTGCGCAGACTCGCGAGGAGTGTCGTCGTCGGGGGAGACGAAC GACCAGCGTATGAAACAGCACTGCGGTTGACCCCGCGAGAGGAGGTGGGC GGATACCTCAAGAGAGACCCGCTGGGAGACGAAGTCGCCGAGTTAAACTC CAAGCTTCAGGAAAGCCTTCGAAGGGTCACACAAGACACGCAGAGACATA AACGTAGGCAACAAGTCGGCGTAGCCCGGCATTACGCGGCCATCCTTGGG GACAGGACCCGACCGCTTAACATAGCCAAGAATATGCCAACGCATGGCCG TGATGAGGATAACATTGACGACAACAACGACACTGATGCTACATCATCGC ATGATTCTCGTCGTTATCGAGCAACAACAGACGATCGTGATAACGGTCGC GCGGCCGACGTCTTTCAGCGCTCGTGCCGTCGTAACCGAGGACGAATAGA AGACTTCGCAAAGAGTAATCGAACATGCAGCAGCACAAGAATATCAACCA GGCATAGCAGCGGAAAGCAAGCCGATTCCGAAACCAGTCCAACAAGGGGG GGTCGCGATTCTACCTCTGGGGCAGGTCTTGAGGTCGGTCGGGCTGGCGT GAGATGGCTGCCTGATGATGAGGCGGAATTGCATTCTCCCGTGACGGGGC AACCAATCGGCTGCAGAGGAAAACATGACCGTCAGGCCCCGCAACAGGAA CAACCCCAGGACGATGTTCTCGATTCCGGGACCACAGACAGCGACTATGG GGAAGAACCGTTCGAATCGGCAAACGGTGCGCCGGAAAGCGTTTCGGGGT CTGTGGCAGCGGCCCCGAGCGTCGTCACCACAGAAGGAGGCGTTTTAGGG ATGAACTTGGATGTCGCGATGGAAAGCAAGGAACACGTAGGCCGAAAAAA TGGTGATGGTGTCGACAGCGAGCGAGAAGACTATTATTTGGGCCACGAGG CCACGGGGGAGGACCGGGTACTGCTGTCCAAAGACGGTGCTCCTCCTTCT TCTGCTGCTGCTGCTGCTTCTACTGCTGCTGCTGCTGCTGCTGCGCTGAG GATCGAGGCTTGTTGGCGAGGTTTCGTCGGAAGATGTTTCGCCAAACGCT TGCTACGATCTGGACTTCTCGATGCTCTACGCAGTCTCGGCGGTGGGAAG GTTTCCAAGGTCGTGTCGCTGACAGACGTTGAAAGAGAAGATCGACGGGG CCTCAATCGTGCTCTTCGACTGGCAACCCAATCCCGGCGTCAACTACCGC CGCAGGCGCATATCTTCGAGTGTGTTCGCTTCGTGAAGTCATTGCAGAGG CGGCGTGCCCGCGTTGTGGAAGCGAGGAAGAGGAGATGGATAGCGGAGAG GCGTCAGAGAAGGGAGAGCGCCAAGAACGTTCCTTCCGGGCTTCTT back to top
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