prot_Ecto-sp13_S_contig14797.3655.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig14797.3655.1
Unique Nameprot_Ecto-sp13_S_contig14797.3655.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length452
Homology
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BLAST of mRNA_Ecto-sp13_S_contig14797.3655.1 vs. uniprot
Match: A0A6H5K3X2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3X2_9PHAE)

HSP 1 Score: 619 bits (1595), Expect = 8.420e-215
Identity = 370/409 (90.46%), Postives = 385/409 (94.13%), Query Frame = 0 
Query:    1 MAAEMSDLEGFEMLDETFGVREASEASDSETCPNSPLQLDRAGSLDNDGQHHLHSCEGGMAAGGRPAKCHATQAPGEGTVPETEKGKQPSASPIMRGKRGVGWTSEPRKGGAAGDMASLQARAEGREVLMPTKEVPEAAPAATLTFGDFPAISTAESSHSAGVSFQAPSARDQPARPEATSAASFGSQREAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRATPSVMPPAALAFGHESDGPDSYGSASPAAAAADEEAIVELVGMGFDREHVVRALKECGRGESWKEAAISLLLEPQVSSLADAEEGLSGTGRQGAAAMQGYADAAPAASQSPCPVCFEDIQAGEVFTVDCKEQHTFCVDCLHHHCRVQLLDSALIPACPLSTMKCGHELGQEEVERV 409
            MA EMSD EGFEMLDETFGVREASEASDSET PNSP+QLDR GSLDNDGQHHLHSCEGGM AGG P+K HATQAPGEGTVP+TEK KQPSASP++RG+RG GWT+E  KGG AGD+ASLQARAEGR  L+ +KEVPEAAPAATLTFGDFPAISTAESSHSAGVS QAP ARDQPAR EA SAA FGSQREAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  ATPSV+PPAAL+FGHESD PDSYGSASPAAAAADEEAI ELVGMGFDREHVVRALKECGRGESWKEAAISLLLEPQVSSLA+AEEGLSGTGRQGAAAMQG+ADAAPAASQSPCPVCFEDIQAGEVFTVDC+EQHTFCVDCLHHHCRVQLLDSALIPACPLSTMKCGHELGQEEVERV
Sbjct:    1 MADEMSDHEGFEMLDETFGVREASEASDSETFPNSPVQLDRTGSLDNDGQHHLHSCEGGMVAGGLPSKRHATQAPGEGTVPQTEKSKQPSASPVVRGERGAGWTNESGKGGVAGDVASLQARAEGRGALVTSKEVPEAAPAATLTFGDFPAISTAESSHSAGVSLQAPPARDQPARLEAASAAPFGSQREAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--ATPSVVPPAALSFGHESDRPDSYGSASPAAAAADEEAIFELVGMGFDREHVVRALKECGRGESWKEAAISLLLEPQVSSLAEAEEGLSGTGRQGAAAMQGFADAAPAASQSPCPVCFEDIQAGEVFTVDCEEQHTFCVDCLHHHCRVQLLDSALIPACPLSTMKCGHELGQEEVERV 407
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BLAST of mRNA_Ecto-sp13_S_contig14797.3655.1 vs. uniprot
Match: D7FH16_ECTSI (Zinc finger family protein, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH16_ECTSI)

HSP 1 Score: 257 bits (656), Expect = 1.020e-77
Identity = 128/134 (95.52%), Postives = 130/134 (97.01%), Query Frame = 0 
Query:  276 MGFDREHVVRALKECGRGESWKEAAISLLLEPQVSSLADAEEGLSGTGRQGAAAMQGYADAAPAASQSPCPVCFEDIQAGEVFTVDCKEQHTFCVDCLHHHCRVQLLDSALIPACPLSTMKCGHELGQEEVERV 409
            MGFDREHVVRAL+ECGRGESWKEAAISLLLEPQVSSLA  EEGLSGTGRQGAAAMQ +ADAAPAASQSPCPVCFEDIQAGEVFTVDCKEQHTFCVDCLHHHCRVQLLDS LIPACPLSTMKCGHELGQEEVERV
Sbjct:    1 MGFDREHVVRALRECGRGESWKEAAISLLLEPQVSSLAGWEEGLSGTGRQGAAAMQRFADAAPAASQSPCPVCFEDIQAGEVFTVDCKEQHTFCVDCLHHHCRVQLLDS-LIPACPLSTMKCGHELGQEEVERV 133
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14797.3655.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K3X2_9PHAE8.420e-21590.46Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FH16_ECTSI1.020e-7795.52Zinc finger family protein, putative n=1 Tax=Ectoc... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR015940Ubiquitin-associated domainSMARTSM00165uba_6coord: 266..306
e-value: 0.0016
score: 27.7
IPR015940Ubiquitin-associated domainPFAMPF00627UBAcoord: 266..292
e-value: 7.7E-7
score: 28.9
IPR015940Ubiquitin-associated domainPROSITEPS50030UBAcoord: 264..307
score: 13.27
NoneNo IPR availableGENE3D1.10.8.10coord: 251..311
e-value: 1.8E-9
score: 39.1
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 343..399
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 339..424
e-value: 4.7E-8
score: 35.0
IPR009060UBA-like superfamilySUPERFAMILY46934UBA-likecoord: 252..306

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14797contigEcto-sp13_S_contig14797:1572..4244 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14797.3655.1mRNA_Ecto-sp13_S_contig14797.3655.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig14797 1503..4326 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig14797.3655.1 ID=prot_Ecto-sp13_S_contig14797.3655.1|Name=mRNA_Ecto-sp13_S_contig14797.3655.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=452bp
MAAEMSDLEGFEMLDETFGVREASEASDSETCPNSPLQLDRAGSLDNDGQ
HHLHSCEGGMAAGGRPAKCHATQAPGEGTVPETEKGKQPSASPIMRGKRG
VGWTSEPRKGGAAGDMASLQARAEGREVLMPTKEVPEAAPAATLTFGDFP
AISTAESSHSAGVSFQAPSARDQPARPEATSAASFGSQREAASPPPTSSA
AFPAHHHPPVPRTTPPATTTAGAAAAAAAAARATPSVMPPAALAFGHESD
GPDSYGSASPAAAAADEEAIVELVGMGFDREHVVRALKECGRGESWKEAA
ISLLLEPQVSSLADAEEGLSGTGRQGAAAMQGYADAAPAASQSPCPVCFE
DIQAGEVFTVDCKEQHTFCVDCLHHHCRVQLLDSALIPACPLSTMKCGHE
LGQEEVERVSGFGNARHTRGRKARLQYPPPPNRRRWTRKVSGGSRRKSRR
C*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR015940UBA
IPR013083Znf_RING/FYVE/PHD
IPR009060UBA-like_sf