mRNA_Ecto-sp13_S_contig14775.3644.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig14775.3644.1
Unique NamemRNA_Ecto-sp13_S_contig14775.3644.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig14775.3644.1 vs. uniprot
Match: D8LDB9_ECTSI (FCP1 homology domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDB9_ECTSI)

HSP 1 Score: 171 bits (433), Expect = 1.420e-48
Identity = 79/82 (96.34%), Postives = 82/82 (100.00%), Query Frame = 1 
Query:   13 QLVVWTASGKSYADAIIDLLDPAGDIFAERFYRDSCVRHHNLCVKDLRRLGRPMNTVVLLDNYVYSFGLTLDNGVPISPWTG 258
            +LVVWTASG+SYADAIIDLLDPAGDIFAERFYRDSC+RHHNLCVKDLRRLGRPMNTVVLLDNYVYSFGLTLDNGVPISPWTG
Sbjct:  466 ELVVWTASGRSYADAIIDLLDPAGDIFAERFYRDSCLRHHNLCVKDLRRLGRPMNTVVLLDNYVYSFGLTLDNGVPISPWTG 547
[Close]
BLAST of mRNA_Ecto-sp13_S_contig14775.3644.1 vs. uniprot
Match: A0A6H5JK84_9PHAE (FCP1 homology domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK84_9PHAE)

HSP 1 Score: 172 bits (436), Expect = 3.650e-48
Identity = 80/82 (97.56%), Postives = 82/82 (100.00%), Query Frame = 1 
Query:   13 QLVVWTASGKSYADAIIDLLDPAGDIFAERFYRDSCVRHHNLCVKDLRRLGRPMNTVVLLDNYVYSFGLTLDNGVPISPWTG 258
            +LVVWTASGKSYADAIIDLLDPAGDIFAERFYRDSC+RHHNLCVKDLRRLGRPMNTVVLLDNYVYSFGLTLDNGVPISPWTG
Sbjct:  509 ELVVWTASGKSYADAIIDLLDPAGDIFAERFYRDSCLRHHNLCVKDLRRLGRPMNTVVLLDNYVYSFGLTLDNGVPISPWTG 590
[Close]
BLAST of mRNA_Ecto-sp13_S_contig14775.3644.1 vs. uniprot
Match: A0A058Z663_FONAL (FCP1 homology domain-containing protein n=1 Tax=Fonticula alba TaxID=691883 RepID=A0A058Z663_FONAL)

HSP 1 Score: 95.5 bits (236), Expect = 4.080e-21
Identity = 46/86 (53.49%), Postives = 62/86 (72.09%), Query Frame = 1 
Query:    1 PYQLQLVVWTASGKSYADAIIDLLDPAGDIFAERFYRDSCVRHHNLCVKDLRRLGRPMNTVVLLDNYVYSFGLTLDNGVPISPWTG 258
            P    +VV+TAS   YADA++D +DPAG++ + R YRD+CV+   L VKDLR LGRP++ VVL+DN + SFG  +D+GVPI  W G
Sbjct:  229 PEIFDVVVFTASQAVYADALLDRIDPAGNLVSHRRYRDTCVQVGPLFVKDLRALGRPLDRVVLVDNALLSFGYNMDSGVPIRSWYG 314
[Close]
BLAST of mRNA_Ecto-sp13_S_contig14775.3644.1 vs. uniprot
Match: A0A813IZK9_POLGL (Hypothetical protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813IZK9_POLGL)

HSP 1 Score: 88.2 bits (217), Expect = 1.110e-18
Identity = 39/82 (47.56%), Postives = 54/82 (65.85%), Query Frame = 1 
Query:   13 QLVVWTASGKSYADAIIDLLDPAGDIFAERFYRDSCVRHHNLCVKDLRRLGRPMNTVVLLDNYVYSFGLTLDNGVPISPWTG 258
            ++V +TAS + YAD ++D LDP G   ++R YR  C       +KD+RRLGRP+  V+L+DN   S GL LDNG+ +S WTG
Sbjct:  258 EVVTFTASSQGYADQVLDRLDPDGKCISKRLYRQHCTEVAGAFLKDMRRLGRPLERVILVDNSPVSLGLCLDNGIAVSSWTG 339
[Close]
BLAST of mRNA_Ecto-sp13_S_contig14775.3644.1 vs. uniprot
Match: A0A078ADY2_STYLE (Nli interacting factor-like phosphatase family protein n=1 Tax=Stylonychia lemnae TaxID=5949 RepID=A0A078ADY2_STYLE)

HSP 1 Score: 87.4 bits (215), Expect = 3.250e-18
Identity = 45/83 (54.22%), Postives = 61/83 (73.49%), Query Frame = 1 
Query:   13 QLVVWTASGKSYADAIIDLLDPAGDIFAERFYRDSCVRHHN-LCVKDLRRLG--RPMNTVVLLDNYVYSFGLTLDNGVPISPW 252
            Q+VV+TAS KSYAD ++D+LDP  +IF  R YR+SCVR  + + VKDLR     R ++ +VL+DN VYSFG  L+NG+PI P+
Sbjct:  709 QIVVFTASHKSYADVVLDILDPKNEIFEMRLYRESCVRSQDGVYVKDLRIFEHCRSLSDMVLVDNAVYSFGYQLENGIPIIPF 791
[Close]
BLAST of mRNA_Ecto-sp13_S_contig14775.3644.1 vs. uniprot
Match: J9I7W9_9SPIT (NLI interacting factor-like phosphatase family protein n=1 Tax=Oxytricha trifallax TaxID=1172189 RepID=J9I7W9_9SPIT)

HSP 1 Score: 85.9 bits (211), Expect = 1.130e-17
Identity = 45/83 (54.22%), Postives = 61/83 (73.49%), Query Frame = 1 
Query:   13 QLVVWTASGKSYADAIIDLLDPAGDIFAERFYRDSCVRHHN-LCVKDLRRLG--RPMNTVVLLDNYVYSFGLTLDNGVPISPW 252
            Q+VV+TAS KSYAD ++D+LDP  +IF  R YR+SCVR  + + VKDLR     R ++ +VL+DN VYSFG  L+NG+PI P+
Sbjct:  740 QIVVFTASHKSYADVVLDILDPKHEIFDMRLYRESCVRTQDGVYVKDLRIFEHCRSLSDLVLVDNAVYSFGYQLENGIPIIPF 822
[Close]
BLAST of mRNA_Ecto-sp13_S_contig14775.3644.1 vs. uniprot
Match: A0A1R2ALP1_9CILI (FCP1 homology domain-containing protein n=1 Tax=Stentor coeruleus TaxID=5963 RepID=A0A1R2ALP1_9CILI)

HSP 1 Score: 84.0 bits (206), Expect = 1.440e-17
Identity = 40/83 (48.19%), Postives = 55/83 (66.27%), Query Frame = 1 
Query:   13 QLVVWTASGKSYADAIIDLLDPAGDIFAERFYRDSCVRHHNLCVKDLRRL-GRPMNTVVLLDNYVYSFGLTLDNGVPISPWTG 258
            +LV++TAS KSYAD I++ LDP  +  + R YR+ C+R     +KDLR   GR M  ++L+DN + SF   LDNG+PIS W G
Sbjct:  171 ELVIFTASQKSYADRILNFLDPNNEFISMRIYREHCIRTEKGFIKDLRIFSGRSMKNLILVDNTLLSFAFQLDNGIPISSWYG 253
[Close]
BLAST of mRNA_Ecto-sp13_S_contig14775.3644.1 vs. uniprot
Match: A0A1R2BK14_9CILI (FCP1 homology domain-containing protein n=1 Tax=Stentor coeruleus TaxID=5963 RepID=A0A1R2BK14_9CILI)

HSP 1 Score: 83.2 bits (204), Expect = 3.890e-17
Identity = 38/82 (46.34%), Postives = 57/82 (69.51%), Query Frame = 1 
Query:   13 QLVVWTASGKSYADAIIDLLDPAGDIFAERFYRDSCVRHHNLCVKDLRRLG-RPMNTVVLLDNYVYSFGLTLDNGVPISPWT 255
            ++V++TAS + YA+AI+D LDP     A R YR+ C  ++   +KDLR LG R +  ++L+DN + SF L ++NG+PISPWT
Sbjct:  189 EIVIFTASYRQYANAILDYLDPLNKYIAYRLYREHCYDYNGYFIKDLRILGNRDLKDMILVDNSLVSFALQIENGIPISPWT 270
[Close]
BLAST of mRNA_Ecto-sp13_S_contig14775.3644.1 vs. uniprot
Match: A0A7S3KKF4_EUPCR (Hypothetical protein (Fragment) n=1 Tax=Euplotes crassus TaxID=5936 RepID=A0A7S3KKF4_EUPCR)

HSP 1 Score: 79.0 bits (193), Expect = 9.190e-17
Identity = 38/82 (46.34%), Postives = 57/82 (69.51%), Query Frame = 1 
Query:   13 QLVVWTASGKSYADAIIDLLDPAGDIFAERFYRDSCVRHHN-LCVKDLRRLGR-PMNTVVLLDNYVYSFGLTLDNGVPISPW 252
            ++VV+TAS K+YADAI+D +DP  + F  R YR++C +  + + +KDLR      +  ++L+DN VYSFG  LDNG+PI P+
Sbjct:   59 EIVVFTASCKNYADAILDYMDPDNEYFQRRLYRETCYKTEDGVYIKDLRVFEEWDLKDIILVDNAVYSFGFQLDNGIPIFPY 140
[Close]
BLAST of mRNA_Ecto-sp13_S_contig14775.3644.1 vs. uniprot
Match: A0A078B2I5_STYLE (Nli interacting factor-like phosphatase family protein n=1 Tax=Stylonychia lemnae TaxID=5949 RepID=A0A078B2I5_STYLE)

HSP 1 Score: 82.4 bits (202), Expect = 1.840e-16
Identity = 40/82 (48.78%), Postives = 58/82 (70.73%), Query Frame = 1 
Query:   13 QLVVWTASGKSYADAIIDLLDPAGDIFAERFYRDSCVR-HHNLCVKDLRRL-GRPMNTVVLLDNYVYSFGLTLDNGVPISPW 252
            Q+VV+TAS +SYAD ++D LDP  ++   R YRDSC++    + +KDLR +  R +  VV++DN VYSFG  L+NG+PI P+
Sbjct:  481 QVVVFTASHQSYADVVLDYLDPKRELIEHRLYRDSCIKTEEGVYIKDLRIIKNRNLKDVVIVDNAVYSFGYQLENGIPILPF 562
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14775.3644.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LDB9_ECTSI1.420e-4896.34FCP1 homology domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JK84_9PHAE3.650e-4897.56FCP1 homology domain-containing protein n=1 Tax=Ec... [more]
A0A058Z663_FONAL4.080e-2153.49FCP1 homology domain-containing protein n=1 Tax=Fo... [more]
A0A813IZK9_POLGL1.110e-1847.56Hypothetical protein n=1 Tax=Polarella glacialis T... [more]
A0A078ADY2_STYLE3.250e-1854.22Nli interacting factor-like phosphatase family pro... [more]
J9I7W9_9SPIT1.130e-1754.22NLI interacting factor-like phosphatase family pro... [more]
A0A1R2ALP1_9CILI1.440e-1748.19FCP1 homology domain-containing protein n=1 Tax=St... [more]
A0A1R2BK14_9CILI3.890e-1746.34FCP1 homology domain-containing protein n=1 Tax=St... [more]
A0A7S3KKF4_EUPCR9.190e-1746.34Hypothetical protein (Fragment) n=1 Tax=Euplotes c... [more]
A0A078B2I5_STYLE1.840e-1648.78Nli interacting factor-like phosphatase family pro... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14775contigEcto-sp13_S_contig14775:3934..4191 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score173.3
Seed ortholog evalue4.8e-41
Seed eggNOG ortholog2880.D8LDB9
Model size258
KEGG koko:K17616
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.phosphoprotein phosphatase activity
EggNOG OGsCOG5190@1,KOG1605@2759
Cds size258
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01009
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462788.0265367-CDS-Ecto-sp13_S_contig14775:3933..41911681462788.0265367-CDS-Ecto-sp13_S_contig14775:3933..4191Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14775 3934..4191 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14775.3644.1prot_Ecto-sp13_S_contig14775.3644.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig14775 3934..4191 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig14775.3644.1

>prot_Ecto-sp13_S_contig14775.3644.1 ID=prot_Ecto-sp13_S_contig14775.3644.1|Name=mRNA_Ecto-sp13_S_contig14775.3644.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=86bp
PYQLQLVVWTASGKSYADAIIDLLDPAGDIFAERFYRDSCVRHHNLCVKD
LRRLGRPMNTVVLLDNYVYSFGLTLDNGVPISPWTG
back to top

mRNA from alignment at Ecto-sp13_S_contig14775:3934..4191-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig14775.3644.1 ID=mRNA_Ecto-sp13_S_contig14775.3644.1|Name=mRNA_Ecto-sp13_S_contig14775.3644.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=258bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14775:3934..4191- (Ectocarpus species13 EcNAP12_S_4_19m)
CCTTATCAACTGCAGCTCGTGGTCTGGACCGCCTCGGGGAAGTCCTACGC
CGACGCGATCATCGATCTCCTCGACCCAGCCGGTGATATCTTCGCCGAGC
GGTTCTACCGCGACTCCTGCGTCCGTCACCACAACCTCTGCGTCAAGGAC
CTGCGGCGGCTGGGCAGGCCCATGAACACGGTCGTCCTCCTGGACAACTA
CGTCTATAGCTTCGGGTTGACCCTCGACAACGGGGTGCCCATCTCCCCGT
GGACTGGC
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14775:3934..4191-

>mRNA_Ecto-sp13_S_contig14775.3644.1 ID=mRNA_Ecto-sp13_S_contig14775.3644.1|Name=mRNA_Ecto-sp13_S_contig14775.3644.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=258bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14775:3934..4191- (Ectocarpus species13 EcNAP12_S_4_19m)
CCTTATCAACTGCAGCTCGTGGTCTGGACCGCCTCGGGGAAGTCCTACGC
CGACGCGATCATCGATCTCCTCGACCCAGCCGGTGATATCTTCGCCGAGC
GGTTCTACCGCGACTCCTGCGTCCGTCACCACAACCTCTGCGTCAAGGAC
CTGCGGCGGCTGGGCAGGCCCATGAACACGGTCGTCCTCCTGGACAACTA
CGTCTATAGCTTCGGGTTGACCCTCGACAACGGGGTGCCCATCTCCCCGT
GGACTGGC
back to top