mRNA_Ecto-sp13_S_contig14755.3634.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig14755.3634.1
Unique NamemRNA_Ecto-sp13_S_contig14755.3634.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig14755.3634.1 vs. uniprot
Match: D7FVU9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVU9_ECTSI)

HSP 1 Score: 172 bits (436), Expect = 1.150e-54
Identity = 78/80 (97.50%), Postives = 79/80 (98.75%), Query Frame = 1 
Query:    1 MDAAAAKSFKMDASAGGCSGMFWRTKPEMGSTTSSSDWPRNGTMLKGWYVAEHPGWVKIDHPEGYWMPVEQHGKAVMHEV 240
            MDAAAAKSFK+DASAGGCSGMFWRTKPEMGSTTSSSDWPRNGTMLKGWYV EHPGWVKIDHPEGYWMPVEQHGKAVMHEV
Sbjct:    1 MDAAAAKSFKLDASAGGCSGMFWRTKPEMGSTTSSSDWPRNGTMLKGWYVTEHPGWVKIDHPEGYWMPVEQHGKAVMHEV 80
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BLAST of mRNA_Ecto-sp13_S_contig14755.3634.1 vs. uniprot
Match: A0A835ZIY5_9STRA (Uncharacterized protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZIY5_9STRA)

HSP 1 Score: 127 bits (318), Expect = 1.130e-36
Identity = 53/79 (67.09%), Postives = 64/79 (81.01%), Query Frame = 1 
Query:    1 MDAAAAKSFKMDASAGGCSGMFWRTKPEMGSTTSSSDWPRNGTMLKGWYVAEHPGWVKIDHPEGYWMPVEQHGKAVMHE 237
            MD A  K F +DA + GC+GMFWR++P MG+T S+SDWPRNG++L GWYV EHPGWV+IDHP GYWMPVEQ G  V+HE
Sbjct:    1 MDPALRKEFVLDAGSKGCTGMFWRSEPRMGATASASDWPRNGSVLHGWYVQEHPGWVRIDHPNGYWMPVEQDGHTVLHE 79
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BLAST of mRNA_Ecto-sp13_S_contig14755.3634.1 vs. uniprot
Match: A0A835TBT2_CHLIN (Uncharacterized protein n=1 Tax=Chlamydomonas incerta TaxID=51695 RepID=A0A835TBT2_CHLIN)

HSP 1 Score: 115 bits (289), Expect = 3.670e-32
Identity = 45/69 (65.22%), Postives = 57/69 (82.61%), Query Frame = 1 
Query:   28 KMDASAGGCSGMFWRTKPEMGSTTSSSDWPRNGTMLKGWYVAEHPGWVKIDHPEGYWMPVEQHGKAVMH 234
            ++DASA GCSGMFWR+KP+M ++ S+ DWPRNG + +GW   EHPGWVK+DH +GYWMP+EQHGK V H
Sbjct:   16 RLDASANGCSGMFWRSKPDMNASVSAPDWPRNGAVFQGWKSQEHPGWVKVDHEKGYWMPIEQHGKPVCH 84
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BLAST of mRNA_Ecto-sp13_S_contig14755.3634.1 vs. uniprot
Match: A0A6H5KXI4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXI4_9PHAE)

HSP 1 Score: 114 bits (286), Expect = 4.260e-32
Identity = 53/55 (96.36%), Postives = 54/55 (98.18%), Query Frame = 1 
Query:    1 MDAAAAKSFKMDASAGGCSGMFWRTKPEMGSTTSSSDWPRNGTMLKGWYVAEHPG 165
            MDAAAAKSFK+DASAGGCSGMFWRTKPEMGSTTSS DWPRNGTMLKGWYVAEHPG
Sbjct:    1 MDAAAAKSFKLDASAGGCSGMFWRTKPEMGSTTSSPDWPRNGTMLKGWYVAEHPG 55
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BLAST of mRNA_Ecto-sp13_S_contig14755.3634.1 vs. uniprot
Match: A0A7S0S545_9CHLO (Hypothetical protein n=1 Tax=Chlamydomonas leiostraca TaxID=1034604 RepID=A0A7S0S545_9CHLO)

HSP 1 Score: 115 bits (289), Expect = 9.350e-32
Identity = 45/77 (58.44%), Postives = 61/77 (79.22%), Query Frame = 1 
Query:    4 DAAAAKSFKMDASAGGCSGMFWRTKPEMGSTTSSSDWPRNGTMLKGWYVAEHPGWVKIDHPEGYWMPVEQHGKAVMH 234
            DA+   +F +DAS  GC+GM+WR+KP+M ++ S+ DWPRNG  L+GW    HPGWVK+DHP+GYW+P+EQHGK V+H
Sbjct:   43 DASTKINFTLDASQNGCTGMYWRSKPDMNASVSAPDWPRNGAKLQGWKSVAHPGWVKVDHPQGYWLPIEQHGKPVVH 119
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BLAST of mRNA_Ecto-sp13_S_contig14755.3634.1 vs. uniprot
Match: A0A835XUH0_9CHLO (Uncharacterized protein n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A835XUH0_9CHLO)

HSP 1 Score: 114 bits (286), Expect = 9.930e-32
Identity = 44/69 (63.77%), Postives = 55/69 (79.71%), Query Frame = 1 
Query:   28 KMDASAGGCSGMFWRTKPEMGSTTSSSDWPRNGTMLKGWYVAEHPGWVKIDHPEGYWMPVEQHGKAVMH 234
            ++DASA GC+GMFWR+KPEM ++  + DWPRNG   KGW   EHPGWVK+DHP+ YW+P+EQHGK V H
Sbjct:   16 RLDASANGCTGMFWRSKPEMNASVQAPDWPRNGATFKGWKSVEHPGWVKVDHPKDYWLPIEQHGKPVCH 84
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BLAST of mRNA_Ecto-sp13_S_contig14755.3634.1 vs. uniprot
Match: A8J4I5_CHLRE (Predicted protein n=3 Tax=Chlamydomonas TaxID=3052 RepID=A8J4I5_CHLRE)

HSP 1 Score: 114 bits (286), Expect = 2.120e-31
Identity = 45/69 (65.22%), Postives = 56/69 (81.16%), Query Frame = 1 
Query:   28 KMDASAGGCSGMFWRTKPEMGSTTSSSDWPRNGTMLKGWYVAEHPGWVKIDHPEGYWMPVEQHGKAVMH 234
            ++DASA GCSGMFWR+KP+M ++ S+ DWPRNG +  GW   EHPGWVK+DH +GYWMP+EQHGK V H
Sbjct:   40 RLDASANGCSGMFWRSKPDMNASVSAPDWPRNGAVFLGWKSQEHPGWVKVDHEKGYWMPIEQHGKPVCH 108
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BLAST of mRNA_Ecto-sp13_S_contig14755.3634.1 vs. uniprot
Match: A0A8J4FZJ0_9CHLO (Uncharacterized protein n=1 Tax=Volvox reticuliferus TaxID=1737510 RepID=A0A8J4FZJ0_9CHLO)

HSP 1 Score: 114 bits (286), Expect = 2.310e-31
Identity = 44/69 (63.77%), Postives = 57/69 (82.61%), Query Frame = 1 
Query:   28 KMDASAGGCSGMFWRTKPEMGSTTSSSDWPRNGTMLKGWYVAEHPGWVKIDHPEGYWMPVEQHGKAVMH 234
            +MDAS  GC+GMFWR+KPEM ++ S+ DWPRNGT+ KGW   EHPGWVK+DHP+GYW+P++Q+G  V H
Sbjct:   45 RMDASKNGCTGMFWRSKPEMNASVSAPDWPRNGTVFKGWKSLEHPGWVKVDHPKGYWLPIQQYGNDVCH 113
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BLAST of mRNA_Ecto-sp13_S_contig14755.3634.1 vs. uniprot
Match: A0A8J4G156_9CHLO (Uncharacterized protein n=1 Tax=Volvox reticuliferus TaxID=1737510 RepID=A0A8J4G156_9CHLO)

HSP 1 Score: 114 bits (286), Expect = 2.670e-31
Identity = 44/69 (63.77%), Postives = 57/69 (82.61%), Query Frame = 1 
Query:   28 KMDASAGGCSGMFWRTKPEMGSTTSSSDWPRNGTMLKGWYVAEHPGWVKIDHPEGYWMPVEQHGKAVMH 234
            +MDAS  GC+GMFWR+KPEM ++ S+ DWPRNGT+ KGW   EHPGWVK+DHP+GYW+P++Q+G  V H
Sbjct:   50 RMDASKNGCTGMFWRSKPEMNASVSAPDWPRNGTVFKGWKSLEHPGWVKVDHPKGYWLPIQQYGNDVCH 118
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BLAST of mRNA_Ecto-sp13_S_contig14755.3634.1 vs. uniprot
Match: A0A150GII6_GONPE (Uncharacterized protein n=1 Tax=Gonium pectorale TaxID=33097 RepID=A0A150GII6_GONPE)

HSP 1 Score: 112 bits (279), Expect = 2.460e-30
Identity = 42/71 (59.15%), Postives = 57/71 (80.28%), Query Frame = 1 
Query:   22 SFKMDASAGGCSGMFWRTKPEMGSTTSSSDWPRNGTMLKGWYVAEHPGWVKIDHPEGYWMPVEQHGKAVMH 234
            S +MDAS  GC+GMFWR+KP+M ++ ++ DWPRNGT+ KGW   EHPGWVK+DHP+ YW+P++Q+G  V H
Sbjct:   40 SIRMDASKNGCTGMFWRSKPDMNASVNAPDWPRNGTVFKGWKSVEHPGWVKVDHPQNYWLPIQQYGNDVCH 110
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14755.3634.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
D7FVU9_ECTSI1.150e-5497.50Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835ZIY5_9STRA1.130e-3667.09Uncharacterized protein n=2 Tax=Tribonema minus Ta... [more]
A0A835TBT2_CHLIN3.670e-3265.22Uncharacterized protein n=1 Tax=Chlamydomonas ince... [more]
A0A6H5KXI4_9PHAE4.260e-3296.36Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S0S545_9CHLO9.350e-3258.44Hypothetical protein n=1 Tax=Chlamydomonas leiostr... [more]
A0A835XUH0_9CHLO9.930e-3263.77Uncharacterized protein n=1 Tax=Edaphochlamys deba... [more]
A8J4I5_CHLRE2.120e-3165.22Predicted protein n=3 Tax=Chlamydomonas TaxID=3052... [more]
A0A8J4FZJ0_9CHLO2.310e-3163.77Uncharacterized protein n=1 Tax=Volvox reticulifer... [more]
A0A8J4G156_9CHLO2.670e-3163.77Uncharacterized protein n=1 Tax=Volvox reticulifer... [more]
A0A150GII6_GONPE2.460e-3059.15Uncharacterized protein n=1 Tax=Gonium pectorale T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14755contigEcto-sp13_S_contig14755:1..1452 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score171.8
Seed ortholog evalue1.3e-40
Seed eggNOG ortholog2880.D7FVU9
Model size240
Hectar predicted targeting categoryother localisation
Exons3
EggNOG OGs2C7IW@1,2SCDY@2759
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-01_002230.1
Cds size240
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462787.318772-CDS-Ecto-sp13_S_contig14755:0..971681462787.318772-CDS-Ecto-sp13_S_contig14755:0..97Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14755 1..97 -
1681462787.330452-CDS-Ecto-sp13_S_contig14755:254..3261681462787.330452-CDS-Ecto-sp13_S_contig14755:254..326Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14755 255..326 -
1681462787.3417928-CDS-Ecto-sp13_S_contig14755:1381..14521681462787.3417928-CDS-Ecto-sp13_S_contig14755:1381..1452Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14755 1382..1452 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14755.3634.1prot_Ecto-sp13_S_contig14755.3634.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig14755 1..1452 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig14755.3634.1

>prot_Ecto-sp13_S_contig14755.3634.1 ID=prot_Ecto-sp13_S_contig14755.3634.1|Name=mRNA_Ecto-sp13_S_contig14755.3634.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=80bp
MDAAAAKSFKMDASAGGCSGMFWRTKPEMGSTTSSSDWPRNGTMLKGWYV
AEHPGWVKIDHPEGYWMPVEQHGKAVMHEV
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mRNA from alignment at Ecto-sp13_S_contig14755:1..1452-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig14755.3634.1 ID=mRNA_Ecto-sp13_S_contig14755.3634.1|Name=mRNA_Ecto-sp13_S_contig14755.3634.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1452bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14755:1..1452- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGACGCAGCGGCAGCAAAGAGCTTCAAGATGGATGCCAGCGCTGGCGG
GTGTTCCGGCATGTTCTGGAGGTACAATCAAAAAGAACAAGCGCTCAAAC
TTGCTTGGCTGGCGAGCCCCAGTTGTTTCTCTATTGAAAATAGTAGCACA
GCAGTCCTGTGACAAGTTTTGGCCCCTGCTTGTCCCGCGAGTAGAAGATA
TTGGGGAGCTCTCCTCGACGTATACCTTGCCCAACAAAGTATCATGTCGG
GCATAGGCGTTTTGCTCCTTAATATTGCTCGCACAAGAACGTGGTCAACG
CAGGGAGATGTTCAGCTACTGGATGCTGTTACCAAGTTTGTCTACGAGCA
GATTCGCTCCGGTTATAATTTCGTTCTTATTGGCATAAGATGGAGTGGTG
GTGATGCTCTTCGGTACCAGCAGACAGCGTCGAGGAGACCCGAGGTCGGA
TTGCTGAAAGCGGAGCCGATAGAGGTTCTGCCGTACGGACACATGGCTTG
GGCTCCGCACCTCGGCCACTGCCAGCTGCTGAGGAGGATACATGTTACGC
GTGGTTAAGCTAACAGCTCTCGTACGCCCAGGCTCTATACAATGTTGGGT
GCCGAAGTGTTGAAGCCGCTGTCCGCCTTAGGGAACTGCTGTTCGCAGAA
GCCTTAACCAAACAACTAGACGGATGGTGGCGAATTATGTTCGGGAATCT
CGTGGGGCGGGCAAGGAGTTCCCAGGGTAGAGCTGGCTAAGATCGTCTGA
GAGGCGATGTATATGGAACTACTGACGGACCCGCGGAAGAATATTCGGCG
AAAATTCCGAGTCCTTGGCACCATCGGAACTCTCTTGGCAAGCGGGGCGC
CGTGGCACGGGGGAGGTGCTTCTAGGAGCAAAGAGGCCACCATTCGCTAC
TGTTTGCGTCTCAATGGGACAGTCAAGGCCTCAACACGGCAACGACCCCA
CCCTACACGGCGAAAGGGGACCAAGCGTAGAAAGTTTTGCTATTAGAGGA
CACCACGGCGACCGAGGAGAGAAGCACGGAGATGGAGGTGGTAGGGATCG
GCCACTGTATCTTTTGTCATTTGTGTTTGCGAGTCATTTTTCTTGCAATC
CACCCCCGCCCACGTTATTCCTGCAGAACAAAGCCGGAGATGGGCTCTAC
CACGTCGAGCTCCGACTGGCCGCGCAACGGCACTATGCTCAAGGGCTGGT
AAGTGCTATCTTTCACTGTGGTGTTTGTGTGCCTTTTTCTCTTCCTATCA
AGCTTACTGCCAAGAGCAAACCAAAATTATAGTGACAGTCCTCTCTTTTG
CACGCTGCTGTTCCAACCCCGCTACTTGTGACTCCTTGCTTTCGTCGATT
CGCAGGTACGTCGCGGAGCACCCCGGGTGGGTGAAGATCGACCACCCGGA
AGGCTACTGGATGCCTGTGGAGCAGCACGGGAAGGCCGTGATGCACGAGG
TG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14755:1..1452-

>mRNA_Ecto-sp13_S_contig14755.3634.1 ID=mRNA_Ecto-sp13_S_contig14755.3634.1|Name=mRNA_Ecto-sp13_S_contig14755.3634.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=240bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14755:1..1452- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGACGCAGCGGCAGCAAAGAGCTTCAAGATGGATGCCAGCGCTGGCGG
GTGTTCCGGCATGTTCTGGAGAACAAAGCCGGAGATGGGCTCTACCACGT
CGAGCTCCGACTGGCCGCGCAACGGCACTATGCTCAAGGGCTGGTACGTC
GCGGAGCACCCCGGGTGGGTGAAGATCGACCACCCGGAAGGCTACTGGAT
GCCTGTGGAGCAGCACGGGAAGGCCGTGATGCACGAGGTG
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