prot_Ecto-sp13_S_contig14713.3603.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig14713.3603.1
Unique Nameprot_Ecto-sp13_S_contig14713.3603.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length363
Homology
BLAST of mRNA_Ecto-sp13_S_contig14713.3603.1 vs. uniprot
Match: A0A6H5K477_9PHAE (RanBP2-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K477_9PHAE)

HSP 1 Score: 426 bits (1095), Expect = 7.770e-145
Identity = 305/364 (83.79%), Postives = 315/364 (86.54%), Query Frame = 0
Query:    1 RQASPQTGSRGNAASGSSRCREASAVKRKKATSFSAGGDSRRSADWQCPECTFNNPAAKRACEMCGGHQVMGGTAAREEIEITGSDSEXXXXXXXXXXXXXXXXGSDFEDLPIGRNPKRPKTGAGAQGSNKPTSSSSFGKNNERPAGRNHVRPLANKPPGQPKPPPAGGDTCVSVREGGRAAASDGAMEKVQEIGEERGRARGGDSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVF-GAESFTLEEDARRRKDFQAGLRAALPDDSDDGPSVAAAGSGRNSSTGDNGAPGGXLXXXXXXXXXXXXXXXXXXXXXXXXXXXRVKLTPMEQQVVDLKAKHPGVLLLVECGYRYRFFGDDA 363
            RQASPQT SRG+AASG SRCRE SAVKRKKATS SAGGD+RRSA WQCP+CTFNNPAA+ AC+MCGGHQV+GGTAAREEIEI GSDSE                G DFEDLPIGRNPKRPKT AGAQGSNKPTSSSS G N ERPAGRN VRPLANKPPGQPKPPPAGGDTCVSVREGG AA  DG+ME+V+EIG ERGRARGG  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX    AESFTLEED+RRRKDFQAGLRAALPDDSDDGPSVAA       STGDNGAPGG L  XXXXXXXXXXXXXXXXXXXXXXXXXRVKLTPMEQQVVDLKAKHPGVLLLVECGYRYRFFGDDA
Sbjct:   35 RQASPQTDSRGDAASGGSRCREPSAVKRKKATSSSAGGDTRRSAAWQCPKCTFNNPAAQLACKMCGGHQVVGGTAAREEIEIFGSDSEADANSEGGGIGEDDD-GWDFEDLPIGRNPKRPKTRAGAQGSNKPTSSSSLGNNKERPAGRNRVRPLANKPPGQPKPPPAGGDTCVSVREGGSAATLDGSMEEVEEIGGERGRARGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSAESFTLEEDSRRRKDFQAGLRAALPDDSDDGPSVAAXXXXXXXSTGDNGAPGGGLGTXXXXXXXXXXXXXXXXXXXXXXXXXRVKLTPMEQQVVDLKAKHPGVLLLVECGYRYRFFGDDA 397          
BLAST of mRNA_Ecto-sp13_S_contig14713.3603.1 vs. uniprot
Match: D7FYL3_ECTSI (MutS protein homolog 3 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYL3_ECTSI)

HSP 1 Score: 357 bits (917), Expect = 6.540e-109
Identity = 278/363 (76.58%), Postives = 289/363 (79.61%), Query Frame = 0
Query:    1 RQASPQTGSRGNAASGSSRCREASAVKRKKATSFSAGGDSRRSADWQCPECTFNNPAAKRACEMCGGHQVMGGTAAREEIEITGSDSEXXXXXXXXXXXXXXXXGSDFEDLPIGRNPKRPKTGAGAQGSNKPTSSSSFGKNNERPAGRNHVRPLANKPPGQPKPPPAGGDTCVSVREGGRAAASDGAMEKVQEIGEERGRARGGDSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVFGAESFTLEEDARRRKDFQAGLRAALPDDSDDGPSVAAAGSGRNSSTGDNGAPGGXLXXXXXXXXXXXXXXXXXXXXXXXXXXXRVKLTPMEQQVVDLKAKHPGVLLLVECGYRYRFFGDDA 363
            RQASPQTGS G+AASG SR RE                D+RRSADWQCP+CTFNNPAAKRACEMCGGHQV+GGTAAREEIEI+GSDSE                GSDFEDLPIGRNPKRP+TGAGAQGSNKPTSSSS                     PGQ KPPPAGGDTCVS+R+ G AAA DGAME++QEIG ERGRARGGDSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVF A+SF LEEDARRRKDFQAGLRAALPDDSDDGPSVA           DNGAPGGXLXXXXXXXXXXXXXXXXXXXXXXXXXXXRVKLTPMEQQVVDLKAKHPGVLLLVECGYRYRFFGDDA
Sbjct:   35 RQASPQTGSPGDAASGGSRYRETXXXXXXXXXXXXXXXDTRRSADWQCPKCTFNNPAAKRACEMCGGHQVVGGTAAREEIEISGSDSEADANSKSGGIGDDDD-GSDFEDLPIGRNPKRPRTGAGAQGSNKPTSSSSLXXXXXX-XXXXXXXXXXXXXPGQSKPPPAGGDTCVSLRKEGGAAALDGAMEEIQEIGGERGRARGGDSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVFSADSFNLEEDARRRKDFQAGLRAALPDDSDDGPSVAXXXXXXXXXXXDNGAPGGXLXXXXXXXXXXXXXXXXXXXXXXXXXXXRVKLTPMEQQVVDLKAKHPGVLLLVECGYRYRFFGDDA 395          
BLAST of mRNA_Ecto-sp13_S_contig14713.3603.1 vs. uniprot
Match: A0A6P8YVN5_THRPL (DNA mismatch repair protein Msh3-like n=1 Tax=Thrips palmi TaxID=161013 RepID=A0A6P8YVN5_THRPL)

HSP 1 Score: 70.9 bits (172), Expect = 1.350e-9
Identity = 30/38 (78.95%), Postives = 35/38 (92.11%), Query Frame = 0
Query:  326 RVKLTPMEQQVVDLKAKHPGVLLLVECGYRYRFFGDDA 363
            +VK TP+EQQVVDLK +HPGVLL VECGY+YRFFG+DA
Sbjct:  167 KVKFTPLEQQVVDLKKEHPGVLLFVECGYKYRFFGEDA 204          
BLAST of mRNA_Ecto-sp13_S_contig14713.3603.1 vs. uniprot
Match: A0A0L8FR99_OCTBM (DNA_MISMATCH_REPAIR_2 domain-containing protein n=2 Tax=Octopus TaxID=6643 RepID=A0A0L8FR99_OCTBM)

HSP 1 Score: 69.3 bits (168), Expect = 4.320e-9
Identity = 28/37 (75.68%), Postives = 35/37 (94.59%), Query Frame = 0
Query:  327 VKLTPMEQQVVDLKAKHPGVLLLVECGYRYRFFGDDA 363
            +K TP+EQQVVDLKAK+PG +LL+ECGY+YRFFG+DA
Sbjct:  188 IKYTPLEQQVVDLKAKYPGTILLIECGYKYRFFGEDA 224          
BLAST of mRNA_Ecto-sp13_S_contig14713.3603.1 vs. uniprot
Match: A0A087SS42_AUXPR (DNA mismatch repair protein Msh3 n=1 Tax=Auxenochlorella protothecoides TaxID=3075 RepID=A0A087SS42_AUXPR)

HSP 1 Score: 67.4 bits (163), Expect = 1.460e-8
Identity = 28/36 (77.78%), Postives = 34/36 (94.44%), Query Frame = 0
Query:  328 KLTPMEQQVVDLKAKHPGVLLLVECGYRYRFFGDDA 363
            KLTP+EQQV DLK +HPGVLL+VECGY++RFFG+DA
Sbjct:   66 KLTPLEQQVTDLKRQHPGVLLVVECGYKFRFFGEDA 101          
BLAST of mRNA_Ecto-sp13_S_contig14713.3603.1 vs. uniprot
Match: A0A059LK94_9CHLO (MutS_I domain-containing protein (Fragment) n=1 Tax=Helicosporidium sp. ATCC 50920 TaxID=1291522 RepID=A0A059LK94_9CHLO)

HSP 1 Score: 65.9 bits (159), Expect = 2.180e-8
Identity = 27/36 (75.00%), Postives = 34/36 (94.44%), Query Frame = 0
Query:  328 KLTPMEQQVVDLKAKHPGVLLLVECGYRYRFFGDDA 363
            KLTP+EQQV +LKA+HPGV+L++ECGY+YRFFG DA
Sbjct:   94 KLTPLEQQVSELKARHPGVVLVIECGYKYRFFGRDA 129          
BLAST of mRNA_Ecto-sp13_S_contig14713.3603.1 vs. uniprot
Match: A0A1X2G9I1_9FUNG (DNA_MISMATCH_REPAIR_2 domain-containing protein n=1 Tax=Hesseltinella vesiculosa TaxID=101127 RepID=A0A1X2G9I1_9FUNG)

HSP 1 Score: 67.0 bits (162), Expect = 2.330e-8
Identity = 29/37 (78.38%), Postives = 33/37 (89.19%), Query Frame = 0
Query:  327 VKLTPMEQQVVDLKAKHPGVLLLVECGYRYRFFGDDA 363
            +K TP+EQQVVDLK KHPGVLL +E GY+YRFFGDDA
Sbjct:   83 LKYTPLEQQVVDLKKKHPGVLLAIEVGYKYRFFGDDA 119          
BLAST of mRNA_Ecto-sp13_S_contig14713.3603.1 vs. uniprot
Match: A0A5B7BU35_DAVIN (MutS_I domain-containing protein (Fragment) n=1 Tax=Davidia involucrata TaxID=16924 RepID=A0A5B7BU35_DAVIN)

HSP 1 Score: 65.1 bits (157), Expect = 3.720e-8
Identity = 29/36 (80.56%), Postives = 33/36 (91.67%), Query Frame = 0
Query:  328 KLTPMEQQVVDLKAKHPGVLLLVECGYRYRFFGDDA 363
            K TP+EQQVVDLKAK+P VLL+VE GYRYRFFG+DA
Sbjct:  167 KFTPLEQQVVDLKAKYPDVLLMVEVGYRYRFFGEDA 202          
BLAST of mRNA_Ecto-sp13_S_contig14713.3603.1 vs. uniprot
Match: A0A7J6F8J5_CANSA (MutS_I domain-containing protein n=2 Tax=Cannabis sativa TaxID=3483 RepID=A0A7J6F8J5_CANSA)

HSP 1 Score: 65.5 bits (158), Expect = 4.170e-8
Identity = 29/37 (78.38%), Postives = 33/37 (89.19%), Query Frame = 0
Query:  327 VKLTPMEQQVVDLKAKHPGVLLLVECGYRYRFFGDDA 363
            VK TP+EQQVVDLK KHP VLL+VE GY+YRFFG+DA
Sbjct:  338 VKYTPLEQQVVDLKKKHPDVLLMVEVGYKYRFFGEDA 374          
BLAST of mRNA_Ecto-sp13_S_contig14713.3603.1 vs. uniprot
Match: A0A7S1SY57_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Tetraselmis chuii TaxID=63592 RepID=A0A7S1SY57_9CHLO)

HSP 1 Score: 62.4 bits (150), Expect = 4.790e-8
Identity = 28/36 (77.78%), Postives = 32/36 (88.89%), Query Frame = 0
Query:  328 KLTPMEQQVVDLKAKHPGVLLLVECGYRYRFFGDDA 363
            KLTP+EQQVV+LK KHP VLL+VE GY+ RFFGDDA
Sbjct:   29 KLTPLEQQVVELKKKHPDVLLVVEVGYKMRFFGDDA 64          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14713.3603.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K477_9PHAE7.770e-14583.79RanBP2-type domain-containing protein n=1 Tax=Ecto... [more]
D7FYL3_ECTSI6.540e-10976.58MutS protein homolog 3 n=1 Tax=Ectocarpus siliculo... [more]
A0A6P8YVN5_THRPL1.350e-978.95DNA mismatch repair protein Msh3-like n=1 Tax=Thri... [more]
A0A0L8FR99_OCTBM4.320e-975.68DNA_MISMATCH_REPAIR_2 domain-containing protein n=... [more]
A0A087SS42_AUXPR1.460e-877.78DNA mismatch repair protein Msh3 n=1 Tax=Auxenochl... [more]
A0A059LK94_9CHLO2.180e-875.00MutS_I domain-containing protein (Fragment) n=1 Ta... [more]
A0A1X2G9I1_9FUNG2.330e-878.38DNA_MISMATCH_REPAIR_2 domain-containing protein n=... [more]
A0A5B7BU35_DAVIN3.720e-880.56MutS_I domain-containing protein (Fragment) n=1 Ta... [more]
A0A7J6F8J5_CANSA4.170e-878.38MutS_I domain-containing protein n=2 Tax=Cannabis ... [more]
A0A7S1SY57_9CHLO4.790e-877.78Hypothetical protein (Fragment) n=1 Tax=Tetraselmi... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001876Zinc finger, RanBP2-typeSMARTSM00547zf_4coord: 44..68
e-value: 5.9E-6
score: 35.8
IPR001876Zinc finger, RanBP2-typePFAMPF00641zf-RanBPcoord: 44..68
e-value: 2.0E-7
score: 30.2
IPR001876Zinc finger, RanBP2-typePROSITEPS01358ZF_RANBP2_1coord: 46..65
IPR001876Zinc finger, RanBP2-typePROSITEPS50199ZF_RANBP2_2coord: 42..71
score: 8.874
IPR007695DNA mismatch repair protein MutS-like, N-terminalPFAMPF01624MutS_Icoord: 330..363
e-value: 3.2E-7
score: 30.6
NoneNo IPR availableGENE3D2.20.28.140coord: 38..76
e-value: 3.7E-7
score: 31.8
NoneNo IPR availablePANTHERPTHR11361DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBERcoord: 290..363
NoneNo IPR availablePANTHERPTHR11361:SF122DNA MISMATCH REPAIR PROTEIN MSH3coord: 290..363
IPR016151DNA mismatch repair protein MutS, N-terminalGENE3D3.40.1170.10coord: 317..363
e-value: 1.1E-12
score: 49.8
IPR016151DNA mismatch repair protein MutS, N-terminalSUPERFAMILY55271DNA repair protein MutS, domain Icoord: 326..363
IPR036443Zinc finger, RanBP2-type superfamilySUPERFAMILY90209Ran binding protein zinc finger-likecoord: 42..66

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14713contigEcto-sp13_S_contig14713:634..2622 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14713.3603.1mRNA_Ecto-sp13_S_contig14713.3603.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig14713 634..2624 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig14713.3603.1 ID=prot_Ecto-sp13_S_contig14713.3603.1|Name=mRNA_Ecto-sp13_S_contig14713.3603.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=363bp
RQASPQTGSRGNAASGSSRCREASAVKRKKATSFSAGGDSRRSADWQCPE
CTFNNPAAKRACEMCGGHQVMGGTAAREEIEITGSDSEADANSEGGGIGD
DDDDGSDFEDLPIGRNPKRPKTGAGAQGSNKPTSSSSFGKNNERPAGRNH
VRPLANKPPGQPKPPPAGGDTCVSVREGGRAAASDGAMEKVQEIGEERGR
ARGGDSSSKGGPDDSSSSSSNSSRLAVFGGGRGSGGSSAVVFGAESFTLE
EDARRRKDFQAGLRAALPDDSDDGPSVAAAGSGRNSSTGDNGAPGGGLGT
ATGAGGGASSSSSRGKVKAAAAAAARVKLTPMEQQVVDLKAKHPGVLLLV
ECGYRYRFFGDDA
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001876Znf_RanBP2
IPR007695DNA_mismatch_repair_MutS-lik_N
IPR016151DNA_mismatch_repair_MutS_N
IPR036443Znf_RanBP2_sf