mRNA_Ecto-sp13_S_contig14683.3583.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig14683.3583.1
Unique NamemRNA_Ecto-sp13_S_contig14683.3583.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig14683.3583.1 vs. uniprot
Match: D8LQV5_ECTSI (Acyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQV5_ECTSI)

HSP 1 Score: 158 bits (400), Expect = 3.620e-38
Identity = 88/108 (81.48%), Postives = 90/108 (83.33%), Query Frame = 3 
Query:    3 VEKLRDVRRELEARVKATAAELSLPSPETLKAEAPARYKTRRFWRM-----------DQVVQMGHVGYDYPIAVQEQQNMAYGKGASPEGSGSGATDTTPLSVKDKAA 293
            VEKLRDVRR LEARVKATA E SLPSPETLKAEAPARYKTRRFWR             +VV MGHVGYDYPIAVQEQQN+AYGKGASPEGSGSGATDTTP SVKDKAA
Sbjct:  474 VEKLRDVRRGLEARVKATAQEHSLPSPETLKAEAPARYKTRRFWRYFSPKRRRKMEWGEVVHMGHVGYDYPIAVQEQQNLAYGKGASPEGSGSGATDTTPPSVKDKAA 581
[Close]
BLAST of mRNA_Ecto-sp13_S_contig14683.3583.1 vs. uniprot
Match: A0A6H5JZH4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZH4_9PHAE)

HSP 1 Score: 149 bits (375), Expect = 4.160e-38
Identity = 90/142 (63.38%), Postives = 95/142 (66.90%), Query Frame = 3 
Query:   33 LEARVKATAAELSLPSPETLKAEAPARYKTRRFWRM-----------DQVVQMGHVGYDYPIAVQEQQNMAYGKGASPEGSGSGATDTTPLSVKDKAAWGVSCMYACVRTFAA*DTTHSSPVGRVVKGLDYSTTKRMLTANI 425
            LEARVKATA E SLPSP TLKAEAPARYKTRRFWR             +VV MGHVGYDYP AVQEQQN+AYGKGASPEGSGSGATDT P   + +   G     AC RT              V +GLDYSTTKRMLTANI
Sbjct:   77 LEARVKATAQEHSLPSPGTLKAEAPARYKTRRFWRYFSPRLRRKMEWGEVVHMGHVGYDYPTAVQEQQNLAYGKGASPEGSGSGATDTIPPPSRTRRHRG---SRACTRT--------------VFEGLDYSTTKRMLTANI 201
[Close]
BLAST of mRNA_Ecto-sp13_S_contig14683.3583.1 vs. uniprot
Match: D7G4Y3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4Y3_ECTSI)

HSP 1 Score: 101 bits (251), Expect = 9.710e-21
Identity = 53/72 (73.61%), Postives = 56/72 (77.78%), Query Frame = 1 
Query:    1 RWRNCATCAGSWKRGSRRPRRSSASHPRRPLRPKPPPATKPAASGG---------WT--RSCRWGTWVTTTP 183
            RWRN ATCAG WKRGSRRPR+S+ASHPRRP RPKPPPATKPAASGG         W+  RSC  GTWVTTTP
Sbjct:  148 RWRNYATCAGGWKRGSRRPRKSTASHPRRPSRPKPPPATKPAASGGTSAPSGGGRWSGERSCTRGTWVTTTP 219
[Close]
BLAST of mRNA_Ecto-sp13_S_contig14683.3583.1 vs. uniprot
Match: D7G4Y5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4Y5_ECTSI)

HSP 1 Score: 66.2 bits (160), Expect = 2.300e-9
Identity = 36/43 (83.72%), Postives = 37/43 (86.05%), Query Frame = 2 
Query:    8 ETARRAPGAGSEGQGDRGGAQPPIPGDP*GRSPRPLQNPPLLE 136
            +TARRAPGAGSEGQG  G AQPPIP DP GR PRPLQNPPLLE
Sbjct:   49 QTARRAPGAGSEGQGHCGRAQPPIPRDPRGRRPRPLQNPPLLE 91
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14683.3583.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LQV5_ECTSI3.620e-3881.48Acyltransferase n=1 Tax=Ectocarpus siliculosus Tax... [more]
A0A6H5JZH4_9PHAE4.160e-3863.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G4Y3_ECTSI9.710e-2173.61Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G4Y5_ECTSI2.300e-983.72Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14683contigEcto-sp13_S_contig14683:554..2648 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score95.1
Seed ortholog evalue1.3e-17
Seed eggNOG ortholog2880.D8LQV5
Model size1723
KEGG rclassRC00004,RC00039,RC00041
KEGG koko:K13507
KEGG ReactionR00851,R09380
KEGG Pathwayko00561,ko00564,ko01100,ko01110,map00561,map00564,map01100,map01110
KEGG ModuleM00089
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.Phosphate acyltransferases
EggNOG OGs28NCQ@1,2QUY6@2759
EC2.3.1.15,2.3.1.42
Cds size204
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01004
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462783.5302672-UTR-Ecto-sp13_S_contig14683:553..6891681462783.5302672-UTR-Ecto-sp13_S_contig14683:553..689Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig14683 554..689 +
1681462783.5449548-UTR-Ecto-sp13_S_contig14683:1061..10621681462783.5449548-UTR-Ecto-sp13_S_contig14683:1061..1062Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig14683 1062..1062 +
1681462783.657469-UTR-Ecto-sp13_S_contig14683:1266..26481681462783.657469-UTR-Ecto-sp13_S_contig14683:1266..2648Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig14683 1267..2648 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462783.637628-CDS-Ecto-sp13_S_contig14683:1062..12661681462783.637628-CDS-Ecto-sp13_S_contig14683:1062..1266Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14683 1063..1266 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14683.3583.1prot_Ecto-sp13_S_contig14683.3583.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig14683 1063..1266 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig14683.3583.1

>prot_Ecto-sp13_S_contig14683.3583.1 ID=prot_Ecto-sp13_S_contig14683.3583.1|Name=mRNA_Ecto-sp13_S_contig14683.3583.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=68bp
MDQVVQMGHVGYDYPIAVQEQQNMAYGKGASPEGSGSGATDTTPLSVKDK
AAWGVSCMYACVRTFAA*
back to top

mRNA from alignment at Ecto-sp13_S_contig14683:554..2648+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig14683.3583.1 ID=mRNA_Ecto-sp13_S_contig14683.3583.1|Name=mRNA_Ecto-sp13_S_contig14683.3583.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2095bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14683:554..2648+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGGTGGAGAAACTGCGCGACGTGCGCCGGGAGCTGGAAGCGAGGGTCAAG
GCGACCGCGGCGGAGCTCAGCCTCCCATCCCCGGAGACCCTTAAGGCCGA
AGCCCCCGCCCGCTACAAAACCCGCCGCTTCTGGAGGTACTTCAGCCCCA
AGTGGAGGAGGAATATGGACTGGGGAGAGATGAGTTCTACCAAACACCGT
TATTTTAGTCATCCCGTCTGTGTATTGCCTTCCAAGCAGAAAAGGGAGAT
GGAGTTAGAACATGTGGAACTCTTCTTTTCCCCCCCCACCCGTGAGCGGC
AGGTTTCACGTATTTTTTATTCGGGCCGCAAGGAGTCATGAGCTGCTGGG
TGTAATTTTCCTTTTTTTGCATCCCGTCGGTTTCAATGGCGGTGGAGAAA
TGGTTGCTCCTTTCCAACCGCCGTGCCAACGCCCACGTCTCCTATCCTCG
TCATTTGTTGGTGGACTATTCCCCCCCGCCCCCCGCCCCCGCGCGGGCGC
GTGCGCAGGATGGACCAGGTCGTGCAGATGGGGCACGTGGGTTACGACTA
CCCCATAGCCGTGCAGGAGCAGCAGAACATGGCCTACGGCAAGGGAGCGT
CTCCGGAAGGAAGCGGGAGCGGGGCGACCGACACAACCCCCCTCTCCGTC
AAGGACAAGGCGGCATGGGGGGTTTCGTGCATGTACGCGTGCGTACGTAC
GTTTGCTGCGTAAGACACCACCCACTCCTCCCCGGTGGGCAGAGTTGTTA
AAGGGCTGGATTACTCCACGACGAAGAGGATGCTTACTGCCAACATTTAG
TGGTGTGTTTCCGGAAAGCTCTCGACGACGTGACGGTTCGCAGTTTTAGG
CACCGTCCCCGTTATAGGCGGCGGGGCACATAGTCGAGCTTCGAGATTGG
GCCTAGGGGCTTTGGTATCCAACGCACACCAACCGAAATGTGTAGCGTAA
GCGAGGGTTTTCTCTCTCCGGCAAGTATTTCGCTGCAGACGTTTCTCATC
GAACAACGGAGTGTAATTGAGTGGCGGAGTGCTTTGCCGGCATTTTGTCC
TCTCTGATCTCCCAATATTAGGGCACCATGATGTTGTTGGAACCGCGCGG
TTCTCAAACGCAACAGCAACCTGTGTATCTAAATCGTAGCTCTTGTGCGC
CCATTTTGGTGTCACTCACCTCCCCCGCGAAGCCGCTTACTTTACTTACA
GTAGCTCATCGTTTTTTTGGAATGACTGTTCAATGTTCAAGGCGTTTCTG
TGCGTGTAGATGTGGTCTGGGGTCTGGGTAACGCGAGGGAGAGAGCGTGC
CCTGCCGATTGTTGGATTTTGATGCGAGTGAAAAATGCGTGTATTTGTGG
GATGGGTACGAATTGGTGGAAGAGAGGTGGAGGCGTGTTGTGTGCGTGCA
CGGTCGAGGGGCTTCGGGTCCATCGTGGGCAAAAAAGTTTTGGTGGGGGG
GTTGTCAGTTGGTTGGTACAGATAGATAGATAGACCGCGTTGTTTTGCGT
GCCGAATGCTTGATGGTTGAGGCAACAGGAGGAGCCGAAAACATTTCGTA
AGCACACGTGTCAATTTTGATTCGTGTGTTTGAGAGTTCGTTTCATCGGA
GTGCTGTGTGTTTTTTGTGACGGCTTTCCAGGGGGGTAGCAAGTCAACAC
CGTTCTGTACATGATTGACGCGTGGCTTAGGAGAGAGAGAGGTCAACGCA
CGTGGGTGCGTCTTTGTGAACATCAGCATCGACTGCCCTAGCCGGAAGGA
TCATGAAATCGCTCAGCCATTAGTAGGACAATACGTACCAAAATGTGTGT
TTGAATGTATTGTTAGCTACAGCAGGACCTCGACCCTCTGCGGTGCTTGC
CTTACTTTTCTTTGAAGAAGTTTTGACGGTGCGGGGTATGTGAACACCGT
GTTTCAAACCAAGAGGTCACTGGCGCTCGCGAATATTTTGAAGGAAGATC
TATTTGAATTGAACAAGGAAGTGTTGAGCAAAAATGACGAGGGAACGTCG
GCCTGAATGTTTGTCGTTGTTGCTGCCCCTGCGAGGATCGGCAGAAAGAA
AGTGCATGCTCATCTGCACTTGATGCCGGGAATCTGTGTCCGTCC
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14683:554..2648+

>mRNA_Ecto-sp13_S_contig14683.3583.1 ID=mRNA_Ecto-sp13_S_contig14683.3583.1|Name=mRNA_Ecto-sp13_S_contig14683.3583.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=204bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14683:554..2648+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGACCAGGTCGTGCAGATGGGGCACGTGGGTTACGACTACCCCATAGC
CGTGCAGGAGCAGCAGAACATGGCCTACGGCAAGGGAGCGTCTCCGGAAG
GAAGCGGGAGCGGGGCGACCGACACAACCCCCCTCTCCGTCAAGGACAAG
GCGGCATGGGGGGTTTCGTGCATGTACGCGTGCGTACGTACGTTTGCTGC
GTAA
back to top