mRNA_Ecto-sp13_S_contig14661.3569.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig14661.3569.1
Unique NamemRNA_Ecto-sp13_S_contig14661.3569.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig14661.3569.1 vs. uniprot
Match: D8LH43_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH43_ECTSI)

HSP 1 Score: 210 bits (535), Expect = 2.170e-66
Identity = 120/144 (83.33%), Postives = 123/144 (85.42%), Query Frame = 1 
Query:    1 MGMGAFFFGLAAAPLVLCSAFVPPAGFRSSAFTAAAAGGFP--SRAGPVLAAERLPFFMSVAGNSGGDHAQHQPDQKEARSSRARFVGRVTAGVAAATAASGLAAGVFGLGAAPV----TGKYSSKATARKRYLPRIVKLVNVF 414
            MGMGAFF GLAAAPL LCSAFVPPAGFRSSA TAAAAGGFP  SR GPVLAAERLP FMSVAGN  GDHAQHQPDQKEARSSRA+FVGRV+AGV AATAASGL     G+GA PV    TGKYSSKATARKRYLPRIVKLVN F
Sbjct:    1 MGMGAFFLGLAAAPLFLCSAFVPPAGFRSSASTAAAAGGFPASSREGPVLAAERLPLFMSVAGNGDGDHAQHQPDQKEARSSRAQFVGRVSAGVVAATAASGLXXXXLGVGAGPVFADSTGKYSSKATARKRYLPRIVKLVNAF 144
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14661.3569.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LH43_ECTSI2.170e-6683.33Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14661contigEcto-sp13_S_contig14661:2..2195 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score212.6
Seed ortholog evalue1.2e-52
Seed eggNOG ortholog2880.D8LH43
Model size414
Hectar predicted targeting categorychloroplast
Exons3
EggNOG OGs2CBGH@1,2SWSR@2759
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-24_000470.1
Cds size414
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462782.7108033-CDS-Ecto-sp13_S_contig14661:1..771681462782.7108033-CDS-Ecto-sp13_S_contig14661:1..77Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14661 2..77 -
1681462782.7212167-CDS-Ecto-sp13_S_contig14661:806..10681681462782.7212167-CDS-Ecto-sp13_S_contig14661:806..1068Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14661 807..1068 -
1681462782.7292278-CDS-Ecto-sp13_S_contig14661:2119..21951681462782.7292278-CDS-Ecto-sp13_S_contig14661:2119..2195Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14661 2120..2195 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14661.3569.1prot_Ecto-sp13_S_contig14661.3569.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig14661 2..2195 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig14661.3569.1

>prot_Ecto-sp13_S_contig14661.3569.1 ID=prot_Ecto-sp13_S_contig14661.3569.1|Name=mRNA_Ecto-sp13_S_contig14661.3569.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=138bp
MGMGAFFFGLAAAPLVLCSAFVPPAGFRSSAFTAAAAGGFPSRAGPVLAA
ERLPFFMSVAGNSGGDHAQHQPDQKEARSSRARFVGRVTAGVAAATAASG
LAAGVFGLGAAPVTGKYSSKATARKRYLPRIVKLVNVF
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mRNA from alignment at Ecto-sp13_S_contig14661:2..2195-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig14661.3569.1 ID=mRNA_Ecto-sp13_S_contig14661.3569.1|Name=mRNA_Ecto-sp13_S_contig14661.3569.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2194bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14661:2..2195- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGCATGGGAGCGTTCTTCTTCGGGCTGGCGGCAGCGCCGTTAGTCCT
CTGTTCGGCGTTCGTCCCTCCCGCGGGTGAGTGGACGAAGGGCAGCAATT
GTGGCACGCCTTTACCATCGTGGCCGTTGAAAACACCCATGTGCACTCTA
CAAGCCTTGTCTGTTTCGTGTCTATCAAGGTGCAAAGCCGGTTCCCGATC
TCCTACTGGTGTAGCATGCCTTCAGGCCGTCAGCCTAGAGTGCTAACATC
TCCGGCCTGTTTGGCCTACAACAGCTCCAGCTGGGGGTTAGACAGACGTT
TGGGTCGAGGCACCATGTCTACAAACGTGCTTGCTCGCATTTTTCAGAAT
CCTCAGGTACCCTGTTCGCAGATTTTCCGCGCGATCGTGCGCTAAAGCAG
TCGTCATGATGAATGGATATTGTGTAGCAGCTGACAGCACAGTCGTTGTT
GCTGCTCGCTGTCTTTGTGGAAGGGTCTGATTGAGTCTTCTGGACTGACC
GGTTCGGTTGGCCGATCGGGCCGGGAGCAAGCGTTGCAAGCGGATGAAAT
CTGAGAAACGAGAACGCACTGCGGGCTGTGTTGCCATGAAAAAAACCAAG
GTGATTTATTCCACTCACCCTCCTCGCCGCCGAGAAAAAAACCTAAACGA
CACTTTGAGCAATTGTGTGAGAGGTGTGGAGTGTTTGTTTTGCCACTACC
TTTTGAGGTACATCCAGACTATGAAGAGAGCATTTTTGTGCATGGCCCGC
GCTGGTACCGGAGCTCTGTTTAAGCAAGTTTCCTCCTTTTCAGAGAGAGT
AGCGGAGGTAGGTATCCAGGTCCACGGTCCATGTTGGCTCCTCTCTGGTG
ACGATGCTTTCTTTTTGCCATGCGGTGTTCGCCCATGATCATAATGCAGG
GGACGAGTTGTGCGAAGAATGTGAAGCAATCAACAGACAGAGGAAGCCAG
CCGATCAGTTGGAAGACGCCACTCCGCCGCCCTGCCGCCCCTGCCGTTTA
CGCACCCCTGTCGTGCTGCTATCCAAATTCAACGATGAACGAACCTCACC
GCGGCTGCCCGCTCTTGTCTCATGCATGGCGCGTGGGATGTGATTGCCCT
CTCCCGGTGTGCATTGCCATGGTGTAGGCTTTAGGAGTTCCGCTTTCACC
GCGGCAGCGGCAGGAGGCTTTCCGTCCCGCGCGGGCCCGGTTCTTGCCGC
TGAGAGGCTTCCATTTTTCATGAGCGTGGCGGGCAACAGTGGTGGAGACC
ATGCACAGCATCAACCGGACCAAAAAGAAGCACGTTCTTCCAGGGCACGG
TTCGTCGGGCGGGTGACCGCGGGAGTGGCGGCGGCGACGGCTGCTTCCGG
GCTCGCTGCTGGGGTTTTTGGACTCGGCGCTGCCCCGGTGTTTGCTGACA
GGCAAGAGGCGCTTCAAAAACGTATCTTCTTCGCCGCCTTTTGCGGGTGT
ACTCTCTGCCGTACTGTCCATCGGCCGGCACTGTCCCCTGGCTCGTACTG
TGGCTGTTTTCGGAGGTGGTGTTTGCGCGTGACGGTGTCGTGTTTTTTTT
TCCAGACTGGTCGCGTTTTTCGTGTTGTGGTCCATTTCACTTGGACGTCC
AGAACGCGTCCTCTTGGGCGTGGGTGGATTCTGAGGCTGTCGCCTGTGTT
TCACAAGACAAAGAAGGTGGATTTGTGGTGCTGCTCGAGAGCATTTGACC
GAGTCCCGACCTCGGCCAAGGGCATGAGTAGACCTTGGTTGGTCGGTGTC
TACATAGGTGCTCTGTGCTCTTTGTAGTTGCCCCCAAGTGCCTTGTAATT
TTTTTGAGCAATTTTTTTTCCTTGCCGTCCAATTGATCGTCAAGGATCGA
TAGTGATAACCGTCGCACCGCCGTACTCCCCACCTGCCGATACGCTCGAT
GCATTCATTTTGGGATGAAGGTATCTGTTGTGCTAGAACTTACCTCGCGT
GCCCCTCCGCAGAATTCGACCGTCGCTGCGTGTATGCTCGAATGGCTCGC
CGCCACCAGTTTTTCCTTCCGTGTTACCGTGGTGTCATGCCATGCCCCAT
GTGCGTCTCTGTGCCCTTCTGCCTGTGCTGCTGCTGCTGCTGTTGCTGCT
GCTGCTTTGGTCAATCAGCACCGGTAAGTATTCTTCCAAGGCTACCGCTA
GGAAGCGGTACCTTCCGCGGATCGTGAAGTTAGTCAACGTTTTC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14661:2..2195-

>mRNA_Ecto-sp13_S_contig14661.3569.1 ID=mRNA_Ecto-sp13_S_contig14661.3569.1|Name=mRNA_Ecto-sp13_S_contig14661.3569.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=414bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14661:2..2195- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGCATGGGAGCGTTCTTCTTCGGGCTGGCGGCAGCGCCGTTAGTCCT
CTGTTCGGCGTTCGTCCCTCCCGCGGGCTTTAGGAGTTCCGCTTTCACCG
CGGCAGCGGCAGGAGGCTTTCCGTCCCGCGCGGGCCCGGTTCTTGCCGCT
GAGAGGCTTCCATTTTTCATGAGCGTGGCGGGCAACAGTGGTGGAGACCA
TGCACAGCATCAACCGGACCAAAAAGAAGCACGTTCTTCCAGGGCACGGT
TCGTCGGGCGGGTGACCGCGGGAGTGGCGGCGGCGACGGCTGCTTCCGGG
CTCGCTGCTGGGGTTTTTGGACTCGGCGCTGCCCCGGTCACCGGTAAGTA
TTCTTCCAAGGCTACCGCTAGGAAGCGGTACCTTCCGCGGATCGTGAAGT
TAGTCAACGTTTTC
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