prot_Ecto-sp13_S_contig14615.3546.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig14615.3546.1
Unique Nameprot_Ecto-sp13_S_contig14615.3546.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length260
Homology
BLAST of mRNA_Ecto-sp13_S_contig14615.3546.1 vs. uniprot
Match: A0A6H5JN42_9PHAE (Ribosome biogenesis protein NOP53 n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JN42_9PHAE)

HSP 1 Score: 388 bits (997), Expect = 9.140e-132
Identity = 230/259 (88.80%), Postives = 238/259 (91.89%), Query Frame = 0
Query:    1 CSGSGRKRRKVEKEAKAAKYLSKNEKKLIVHKFLGKGKPRAAGRKRISDPWADEDQEEGSSNKEPQEALPPSTSREKKAEDSIPLLSLEGGAAAIATXXXXXXXXXXGGRQGGEDFVTSPRVPGRNAKRPKQSVRNLAKLGVCHPGQSYNPAEEDHDDVLASAVAVELKRQEAIEEESAPISAGMSEETLAVIXXXXXXXXXXXXXXXXXTTGLSLGKPTPASGKLTRAQRNKQKRAKAAKHELAVRRNKKHMIKSIDQ 259
             +GSGRKRRKVEKEAKAAKYLSKNEKKLIVHKFLGKGKPRA GR RISDPWADEDQ+E ++NK+PQEALPPST  EK+AEDS PLLSL+GGAAA AT          GGRQGGE FVTSPRVPGRNAKRPK S RNLAKLGVCHPGQSYNPAEEDHDDVLASAVAVELKRQEAIEEESAPISAGMSEETLAVIXXXXXXXXXXXXXXXXXTTGLSLGKPTPASGKLTRAQRNKQKRAKAAKHELAVRRN+KHMIKSIDQ
Sbjct:   46 AAGSGRKRRKVEKEAKAAKYLSKNEKKLIVHKFLGKGKPRAVGRNRISDPWADEDQDEATNNKKPQEALPPSTPGEKEAEDSNPLLSLKGGAAAKATAAMEESAREPGGRQGGEYFVTSPRVPGRNAKRPKHSARNLAKLGVCHPGQSYNPAEEDHDDVLASAVAVELKRQEAIEEESAPISAGMSEETLAVIXXXXXXXXXXXXXXXXXTTGLSLGKPTPASGKLTRAQRNKQKRAKAAKHELAVRRNRKHMIKSIDQ 304          
BLAST of mRNA_Ecto-sp13_S_contig14615.3546.1 vs. uniprot
Match: B8BPY1_THAPS (Ribosome biogenesis protein NOP53 n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BPY1_THAPS)

HSP 1 Score: 74.3 bits (181), Expect = 1.610e-11
Identity = 58/136 (42.65%), Postives = 75/136 (55.15%), Query Frame = 0
Query:  128 KRPKQSVRNLAKLGVCHPGQSYNPAEEDHDDVLASAVAVELKRQEAIEEESAPISAGMSEETLAVIXXXXXXXXXXXXXXXXXTTG----LSLGKPTPASGKLTRAQRNKQKRAKAAKHELAVRRNKKHMIKSIDQ 259
            K  + + +    L V HPGQSY P +E H D +  A+++E++R EA E +S PIS+GMSE T   I        XXXXXXXXX  G    +   K      KLTRAQRNKQKR KA +  L  R+  K     I++
Sbjct:  214 KHAQLTAKPTLALEVAHPGQSYRPDKEQHQDAIGEALSIEIRRNEAEEYKSKPISSGMSEFTKRFIVGESDSEEXXXXXXXXXXXGNVATMGATKLIKKKEKLTRAQRNKQKRVKAEQTALFARKQSKQFNHQINE 349          
BLAST of mRNA_Ecto-sp13_S_contig14615.3546.1 vs. uniprot
Match: K0TBJ2_THAOC (Ribosome biogenesis protein NOP53 n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TBJ2_THAOC)

HSP 1 Score: 72.8 bits (177), Expect = 5.120e-11
Identity = 60/154 (38.96%), Postives = 81/154 (52.60%), Query Frame = 0
Query:  114 EDFVTSPRVPGRNAKRPKQSVRNLAKLG--------VCHPGQSYNPAEEDHDDVLASAVAVELKRQEAIEEESAPISAGMSEETLAVIXXXXXXXXXXXXXXXXXTTGLSLGKPTPASGKLTRAQRNKQKRAKAAKHELAVRRNKKHMIKSIDQ 259
            +D    P  P       +   R  A+L         V HPGQSY+P +E H D +  A+++E++R EA++ +  PIS GMS+ T   I     XXXXXXXXXX  T   +  K      KLTRAQRNKQKR KA +  L  RR +K  +  + +
Sbjct:  174 DDLYNLPAQPAPKLSNKQLKARRNAELAAPNKLAVEVAHPGQSYHPDKEHHQDAIGEALSIEIRRNEALDYKRKPISDGMSQFTKEFIINNSDXXXXXXXXXXTATNVST--KIIKRKEKLTRAQRNKQKRVKAEETALKERRERKKFMHQVHE 325          
BLAST of mRNA_Ecto-sp13_S_contig14615.3546.1 vs. uniprot
Match: A0A7S2JT46_9STRA (Ribosome biogenesis protein NOP53 n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2JT46_9STRA)

HSP 1 Score: 70.5 bits (171), Expect = 3.030e-10
Identity = 57/151 (37.75%), Postives = 87/151 (57.62%), Query Frame = 0
Query:  117 VTSPRVPGRNAKR---PKQSVRNLAKLGVC--HPGQSYNPAEEDHDDVLASAVAVELKRQEAIEEESAPISAGMSEETLAVIXXXXXXXXXXXXXXXXXTTGLSLG---KPTPASGKLTRAQRNKQKRAKAAKHELAVRRNKKHMIKSIDQ 259
            + +P    R A+R   P    +   K+ V   H GQSY P +E H DV+  A+AVEL+R++A+E    P+  GMS+ETLA++         XXXXXXX   G++     +P     KLTRAQRN+QKR +  +H++ +++ K+  +K  +Q
Sbjct:  167 LVTPAEAARRAQRKSKPHTHKQQQPKVAVDLPHGGQSYQPDKEQHQDVIGEALAVELRRKDAVEYRRTPLWNGMSKETLALLDTRSDSDSDXXXXXXXDEGGIAAAGNFQPKKKKEKLTRAQRNRQKRVR--QHDVEMQKQKR--LKKFNQ 313          
BLAST of mRNA_Ecto-sp13_S_contig14615.3546.1 vs. uniprot
Match: A0A7S4UQA2_9STRA (Ribosome biogenesis protein NOP53 n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4UQA2_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 2.860e-8
Identity = 51/136 (37.50%), Postives = 73/136 (53.68%), Query Frame = 0
Query:  131 KQSVRNLAKLGVCHPGQSYNPAEEDHDDVLASAVAVELKRQEAIEEESAPISAGMSEETLAVIXXXXXXXXXXXXXXXXXTTGLS-------LGKPTPASGKLTRAQRNKQKRAKAAKHELAVRRNKKHMIKSIDQ 259
            K   +    + + H GQSYNP E  H DV+  A+++ELKR+EA+     PIS G+S+ETLA++       XXXXXXXXXX    +         K      K TR QRNKQKR +     +  R+ +K  +  +++
Sbjct:  209 KSLSKPTVPIELAHGGQSYNPDENQHQDVIGEALSIELKREEALAYRKTPISNGLSKETLAIMVHSSDEEXXXXXXXXXXXXXNNDSFQPRLKSKVINRENKKTRVQRNKQKRTREEHASIQQRKKQKTFLHEVNE 344          
BLAST of mRNA_Ecto-sp13_S_contig14615.3546.1 vs. uniprot
Match: B5Y3Y8_PHATC (Ribosome biogenesis protein NOP53 n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B5Y3Y8_PHATC)

HSP 1 Score: 62.8 bits (151), Expect = 1.160e-7
Identity = 42/142 (29.58%), Postives = 70/142 (49.30%), Query Frame = 0
Query:  118 TSPRVPGRNAKRPKQSVRNLAKLGVCHPGQSYNPAEEDHDDVLASAVAVELKRQEAIEEESAPISAGMSEETLAVIXXXXXXXXXXXXXXXXXTTGLSLGKPTPASGKLTRAQRNKQKRAKAAKHELAVRRNKKHMIKSIDQ 259
            T+P      A++ K   +    + V   GQSY P    H  ++  AV +E++R +AIE    PI+ G+SEET A++                 T  +  G     + KLT+AQRNKQ+R +  +  L ++R +K ++K + +
Sbjct:  155 TAPEACVIKAQKAKVQPKLAVAVDVAKDGQSYRPDPNAHKSIIQKAVDLEMRRGKAIEYNRTPIAQGLSEETKALLVEDTDSEDEESDVENE-TEDILAGSLPRRTDKLTKAQRNKQRRLRKEQVLLEMKRREKKLMKQVGE 295          
BLAST of mRNA_Ecto-sp13_S_contig14615.3546.1 vs. uniprot
Match: A0A835YY73_9STRA (Ribosome biogenesis protein NOP53 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YY73_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 3.170e-7
Identity = 27/49 (55.10%), Postives = 41/49 (83.67%), Query Frame = 0
Query:  145 PGQSYNPAEEDHDDVLASAVAVELKRQEAIEEESAPISAGMSEETLAVI 193
            PGQSYNP + DH++ +A AVA+ELKR++A++  +API+ G+S ETLA++
Sbjct:  120 PGQSYNPEQGDHEEAVAEAVALELKREDAVKAANAPIAQGLSAETLALL 168          
BLAST of mRNA_Ecto-sp13_S_contig14615.3546.1 vs. uniprot
Match: A0A448ZT81_9STRA (Ribosome biogenesis protein NOP53 n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZT81_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 4.140e-6
Identity = 48/133 (36.09%), Postives = 69/133 (51.88%), Query Frame = 0
Query:  127 AKRPKQSVRNLAKLGVCHPGQSYNPAEEDHDDVLASAVAVELKRQEAIEEESAPISAGMSEETLAVIXXXXXXXXXXXXXXXXXT--TGLSLGKPTPASGKLTRAQRNKQKRAKAAKHELAVRRNKKHMIKSI 257
            A  PK   R    + +   GQSYNP ++DH + +  A+ VE KR+ A +      S GM  ET A++           XXXXXX   T  ++ K  P   K+TRAQRNKQKR +A ++E+  R+ +K     +
Sbjct:  176 APLPKNKDRAPVMVDLAGSGQSYNPDQKDHKNAIQKALLVETKRKVAEKNAKESASQGMRPETRALLLGDSDSEDESDXXXXXXXXPTTEAIAKKRPE--KMTRAQRNKQKRIRAEQYEIKQRKKQKQFAHEL 306          
BLAST of mRNA_Ecto-sp13_S_contig14615.3546.1 vs. uniprot
Match: A0A7S1BLJ4_9STRA (Ribosome biogenesis protein NOP53 n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BLJ4_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 7.430e-6
Identity = 54/103 (52.43%), Postives = 63/103 (61.17%), Query Frame = 0
Query:  135 RNLAKLGVCHPGQSYNPAEEDHDDVLASAVAVELKRQEAIEEESAPISAG-MSEETLAVIXXXXXXXXXXXXXXXXXTTGLSLGKPTPASGKLTRAQRNKQKR 236
            R    + V HPGQSYNP  E H + L  A+A+E++R EA  E   P   G MS ET AV+  XXXXXXXXXXXXXXX       K      KLTR+QRNKQ+R
Sbjct:  170 RPTIAVEVAHPGQSYNPDTEFHQEALGEALAIEIRRTEAEVELRTPAGGGQMSAETKAVLTRXXXXXXXXXXXXXXXXXXXDRNKMKKRVTKLTRSQRNKQRR 272          
BLAST of mRNA_Ecto-sp13_S_contig14615.3546.1 vs. uniprot
Match: A0A7S0CMX1_9STRA (Ribosome biogenesis protein NOP53 n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0CMX1_9STRA)

HSP 1 Score: 53.5 bits (127), Expect = 7.620e-5
Identity = 29/54 (53.70%), Postives = 38/54 (70.37%), Query Frame = 0
Query:  140 LGVCHPGQSYNPAEEDHDDVLASAVAVELKRQEAIEEESAPISAGMSEETLAVI 193
            + V H GQSY+P  E H DV+  A+A+ELKR+EA+E    PI A MSEETL ++
Sbjct:    3 IEVAHGGQSYHPDGELHQDVIGEALAMELKREEAMEYLKTPI-AEMSEETLRIL 55          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14615.3546.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
A0A6H5JN42_9PHAE9.140e-13288.80Ribosome biogenesis protein NOP53 n=2 Tax=Ectocarp... [more]
B8BPY1_THAPS1.610e-1142.65Ribosome biogenesis protein NOP53 n=1 Tax=Thalassi... [more]
K0TBJ2_THAOC5.120e-1138.96Ribosome biogenesis protein NOP53 n=1 Tax=Thalassi... [more]
A0A7S2JT46_9STRA3.030e-1037.75Ribosome biogenesis protein NOP53 n=1 Tax=Leptocyl... [more]
A0A7S4UQA2_9STRA2.860e-837.50Ribosome biogenesis protein NOP53 n=2 Tax=Ditylum ... [more]
B5Y3Y8_PHATC1.160e-729.58Ribosome biogenesis protein NOP53 n=1 Tax=Phaeodac... [more]
A0A835YY73_9STRA3.170e-755.10Ribosome biogenesis protein NOP53 n=1 Tax=Tribonem... [more]
A0A448ZT81_9STRA4.140e-636.09Ribosome biogenesis protein NOP53 n=1 Tax=Pseudo-n... [more]
A0A7S1BLJ4_9STRA7.430e-652.43Ribosome biogenesis protein NOP53 n=1 Tax=Corethro... [more]
A0A7S0CMX1_9STRA7.620e-553.70Ribosome biogenesis protein NOP53 n=1 Tax=Probosci... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011687Ribosome biogenesis protein Nop53/GLTSCR2PFAMPF07767Nop53coord: 8..259
e-value: 3.2E-19
score: 69.6
IPR011687Ribosome biogenesis protein Nop53/GLTSCR2PANTHERPTHR14211GLIOMA SUPPRESSOR CANDIDATE REGION GENE 2coord: 10..259
NoneNo IPR availablePANTHERPTHR14211:SF7RIBOSOME BIOGENESIS PROTEIN NOP53coord: 10..259

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14615contigEcto-sp13_S_contig14615:117..2649 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14615.3546.1mRNA_Ecto-sp13_S_contig14615.3546.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig14615 117..3270 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig14615.3546.1 ID=prot_Ecto-sp13_S_contig14615.3546.1|Name=mRNA_Ecto-sp13_S_contig14615.3546.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=260bp
CSGSGRKRRKVEKEAKAAKYLSKNEKKLIVHKFLGKGKPRAAGRKRISDP
WADEDQEEGSSNKEPQEALPPSTSREKKAEDSIPLLSLEGGAAAIATAAV
EESAREEGGRQGGEDFVTSPRVPGRNAKRPKQSVRNLAKLGVCHPGQSYN
PAEEDHDDVLASAVAVELKRQEAIEEESAPISAGMSEETLAVIIGDEDDE
ESSDGEEDDDTTGLSLGKPTPASGKLTRAQRNKQKRAKAAKHELAVRRNK
KHMIKSIDQ*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011687Nop53/GLTSCR2