mRNA_Ecto-sp13_S_contig146.3528.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig146.3528.1 vs. uniprot
Match: A0A6H5JU58_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU58_9PHAE) HSP 1 Score: 426 bits (1094), Expect = 6.980e-133 Identity = 250/376 (66.49%), Postives = 255/376 (67.82%), Query Frame = 1
Query: 1 QVLRTVGGLVGGEGLKVSAVGKHITSLEGVPSGVSSRATHLFLSNNSLRWLRGVEAFSGVVCLSISHNLVRRTEDLHPLSLLAHLETLSLEGNPVCGAANYRAHVVSLTSACLKTLDGREVIYGETSDAAAIVAAERSATNKTSREHCLCLLLHHMSRLLECHAELREALLEAGSGCSTGGGGIGGDQLPWRFRRGGRVFDGRRVAWRQRMAVAMPVHQMLAVLQADSWPVFDQSELEVLERQTLDEAAEVL---------------------------------------------------------------------------ADVVTSRRTAGQRTNELLESAVATLNSPGTRMWVQVLGEVQRRTEGKVS 903
QVLRTVG LVGG GLKVSAVGKHIT L+GVPSGVSSRATHLFLSNNSLRWLRGVEAFSGVVCLSISHNLVRRTEDLHPLSLLAHLETLSLEGNPVCGAANYRAHVVSL SACLKTLDGREVI GETSDA AIVAAERSAT+ SGCSTGGGGIGGDQLPWRFRRGGRVF+G+RVAWRQRMAVAMPVHQ ADSWPVFDQSEL+VLERQTLDEAAEVL ADVVTSRR AGQRTNELLESAVATLNSPGTRMWVQVLGEVQRRTEGKVS
Sbjct: 63 QVLRTVGELVGGGGLKVSAVGKHITLLKGVPSGVSSRATHLFLSNNSLRWLRGVEAFSGVVCLSISHNLVRRTEDLHPLSLLAHLETLSLEGNPVCGAANYRAHVVSLASACLKTLDGREVISGETSDAPAIVAAERSATS---------------------------------SGCSTGGGGIGGDQLPWRFRRGGRVFNGQRVAWRQRMAVAMPVHQ------ADSWPVFDQSELKVLERQTLDEAAEVLGEYGEQKRAFCLLGFMGSTVPSFQSSSWQTVDFSFDQLHLPNLGRRISQSVLSPASLTFRLCACDIFRWKRHGDQADVVTSRRAAGQRTNELLESAVATLNSPGTRMWVQVLGEVQRRTEGKVS 399
BLAST of mRNA_Ecto-sp13_S_contig146.3528.1 vs. uniprot
Match: D8LLH8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLH8_ECTSI) HSP 1 Score: 306 bits (785), Expect = 2.590e-91 Identity = 194/346 (56.07%), Postives = 196/346 (56.65%), Query Frame = 1
Query: 1 QVLRTVGGLVGGEGLKVSAVGKHITSLEGVPSGVSSRATHLFLSNNSLRWLRGVEAFSGVVCLSISHNLVRRTEDLHPLSLLAHLETLSLEGNPVCGAANYRAHVVSLTSACLKTLDGREVIYGETSDAAAIVAAERSATNKTSREHCLCLLLHHMSRLLECHAELREALLEAGSGCSTGGGGIGGDQLPWRFRRGGRVFDGRRVAWRQRMAVAMPVHQMLAVLQADSWPVFDQSELEVLERQTLDEAAEVL---------------------------------------------ADVVTSRRTAGQRTNELLESAVATLNSPGTRMWVQVLGEVQRRTEGKVS 903
QVLRTVGGLVGGEGLKVSAVGKHITSLEGVPSGVSSRAT LFLSNNSLRWLRGVEAFSGVVCLSISHNLVRRTEDLHPLSLLAHLE LSLEGNPVCGAANYRAHVVSL SACLKTLDGRE MLAVLQADSWPVFDQSEL+VLERQ L+EAAEVL ADVV SRR AGQRTNELLESAVATLNSPGTRMWVQVLGEVQRRTEGKVS
Sbjct: 69 QVLRTVGGLVGGEGLKVSAVGKHITSLEGVPSGVSSRATQLFLSNNSLRWLRGVEAFSGVVCLSISHNLVRRTEDLHPLSLLAHLEMLSLEGNPVCGAANYRAHVVSLASACLKTLDGRE---------------------------------------------------------------------------------------------------MLAVLQADSWPVFDQSELDVLERQILEEAAEVLVDFSFDQLHLPNLGRRVSQSILSPASLTFRLCACDIFPWKRHGDQADVVNSRRAAGQRTNELLESAVATLNSPGTRMWVQVLGEVQRRTEGKVS 315
BLAST of mRNA_Ecto-sp13_S_contig146.3528.1 vs. uniprot
Match: A0A836C7E2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C7E2_9STRA) HSP 1 Score: 109 bits (273), Expect = 5.500e-23 Identity = 86/224 (38.39%), Postives = 108/224 (48.21%), Query Frame = 1
Query: 1 QVLRTVGGLVGGEGLKVSAVGKHITSLEGVPSGVSSRATHLFLSNNSLRWLRGVEAFSGVVCLSISHNLVRRTEDLHPLSLLAHLETLSLEGNPVCGAANYRAHVVSLTSACLKTLDGREVIYGETSDAAAIVAAERSATNKTSREHCLCLLLHHMSRLLECHAELREALLEAGSGCSTGGGGIGGDQLPWRFRRGGRVFDGRRVAWRQRMAVAMPVHQMLAVL 672
Q L TV L+ G ++SAVGK ITSL GVP V++ T L LS N L L G+ F+ + LS+ NL+R T DL PL+ LA LE L+L GN V N RAHV+ L L+ LDG V E + A IV E +A ++ HM L H ELR+AL G + P R R AWRQR P+ +LA L
Sbjct: 118 QALHTVPNLLSHGGARLSAVGKFITSLAGVPPSVAAPVTSLLLSRNCLAALGGLRGFAALRRLSLRCNLLRYTCDLWPLAELAVLEELTLAGNAVLAMPNCRAHVLFLCCRALRELDGVAVTAEERAAAPLIVRKELAAQDRLVAGARAAAAAAHMRLLFTAHRELRDALW----------GRFAAARAPLR-----------RWAWRQRPLCDRPIASVLAAL 320
BLAST of mRNA_Ecto-sp13_S_contig146.3528.1 vs. uniprot
Match: A0A662WF45_9STRA (Uncharacterized protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WF45_9STRA) HSP 1 Score: 90.1 bits (222), Expect = 2.670e-16 Identity = 53/154 (34.42%), Postives = 84/154 (54.55%), Query Frame = 1
Query: 37 EGLKVSAVGKHITSLEGVPSGVSSRATHLFLSNNSLRWLRGVEAFSGVVCLSISHNLVRRTEDLHPLSLLAHLETLSLEGNPVCGAANYRAHVVSLTSACLKTLDGREVIYGETSDAAAIVAAERSATNKTSREHCLCLLLHHMSRLLECHAEL 498
+G +++AVGK I S+ VP VS+ T L+LS N+LR L G++ F+GV LS+ NL+ + ++ L+ L L L+L GNP+C NYR + ++ LD +V E A + A + + ++ H L H+S+L+ H EL
Sbjct: 70 DGSRLNAVGKGILSVGRVPPSVSAHITALYLSQNNLRSLEGIDQFAGVRLLSVGGNLLACSAEIAKLARLPQLRNLNLMGNPICDQPNYRLRAIDALKQ-IQVLDNADVSKKEREIAPRVAAQDEALRAMVTQNHFDIQKLQHISQLIPLHKEL 222
BLAST of mRNA_Ecto-sp13_S_contig146.3528.1 vs. uniprot
Match: D0MZL8_PHYIT (Uncharacterized protein n=3 Tax=Phytophthora infestans TaxID=4787 RepID=D0MZL8_PHYIT) HSP 1 Score: 87.8 bits (216), Expect = 1.450e-15 Identity = 52/151 (34.44%), Postives = 83/151 (54.97%), Query Frame = 1
Query: 37 EGLKVSAVGKHITSLEGVPSGVSSRATHLFLSNNSLRWLRGVEAFSGVVCLSISHNLVRRTEDLHPLSLLAHLETLSLEGNPVCGAANYRAHVVSLTSACLKTLDGREVIYGETSDAAAIVAAERSATNKTSREHCLCLLLHHMSRLLECH 489
+G +++AVGK + L VP VS+ T L+LS NSLR L G+E FS V LS+ NL+ +++ L+ LA L L+L GNP+C NYR ++++ L+ LD ++ E A + A + + S+ H L +++L+ H
Sbjct: 3 DGARLNAVGKGLHVLGRVPPTVSASVTALYLSQNSLRSLEGIEQFSAVRLLSVGGNLIASEKEVAILNDLAQLRNLNLMGNPLCDQPNYRLRIIAMLDK-LQVLDNSDITKKERDAAPHVAAQDNALRGMVSQNHFGIQKLQRIAQLISLH 152
BLAST of mRNA_Ecto-sp13_S_contig146.3528.1 vs. uniprot
Match: H3GNS2_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GNS2_PHYRM) HSP 1 Score: 85.9 bits (211), Expect = 1.780e-15 Identity = 55/153 (35.95%), Postives = 84/153 (54.90%), Query Frame = 1
Query: 37 EGLKVSAVGKHITSLEGVPSGVSSRATHLFLSNNSLRWLRGVEAFSGVVCLSISHNLVRRTEDLHPLSLLAHLETLSLEGNPVCGAANYRAHVVSLTSACLKTLDGREVIYGETSDAAAIVAAERSATNKTSREHCLCLLLHHMSRLLECHAE 495
+G +++AVGK I L VPS V + T L+LS N+LR L GVE F+ V LS+ NLV +++ L+ L L L+L GNP+C NYR VV++ + L+ LD +V E A ++A + + + H L +++L+ H E
Sbjct: 61 DGSRLNAVGKGIYVLGRVPSTVCAGVTALYLSQNNLRSLAGVEQFAAVRLLSVGGNLVASDKEVIRLTELPQLRNLNLMGNPLCDGPNYRLRVVAVLTK-LQVLDNSDVTKKEREAAPHVIAKDNALRAMVMQNHFDIHKLQRIAKLISLHKE 212
BLAST of mRNA_Ecto-sp13_S_contig146.3528.1 vs. uniprot
Match: A0A6A4G9R2_9STRA (Uncharacterized protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A6A4G9R2_9STRA) HSP 1 Score: 85.1 bits (209), Expect = 3.270e-15 Identity = 54/168 (32.14%), Postives = 89/168 (52.98%), Query Frame = 1
Query: 37 EGLKVSAVGKHITSLEGVPSGVSSRATHLFLSNNSLRWLRGVEAFSGVVCLSISHNLVRRTEDLHPLSLLAHLETLSLEGNPVCGAANYRAHVVSLTSACLKTLDGREVIYGETSDAAAIVAAERSATNKTSREHCLCLLLHHMSRLLECHAELREALLEAGSGCSTG 540
+G +++AVGK + L VP V + T L+LS N++R L G+E F+ V LS+ NL+ ++ L+ LA L L+L GNP+C NYR VV++ L+ LD ++ E A + A + + ++ H L +++L+ H E ++ +G STG
Sbjct: 77 DGARLNAVGKGVHVLGRVPPTVCASVTALYLSQNNMRSLEGIEQFAAVRLLSVGGNLIASDNEVARLNELAQLRNLNLMGNPLCDQPNYRLRVVAMLKK-LQVLDNTDITKKEREAAPNVAAQDDALRTMVTQNHFDIHKLQRIAQLIALHKEFYGCVM---AGVSTG 240
BLAST of mRNA_Ecto-sp13_S_contig146.3528.1 vs. uniprot
Match: A0A0P1A6A7_PLAHL (Leucine-rich repeat n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1A6A7_PLAHL) HSP 1 Score: 85.5 bits (210), Expect = 8.260e-15 Identity = 53/151 (35.10%), Postives = 84/151 (55.63%), Query Frame = 1
Query: 37 EGLKVSAVGKHITSLEGVPSGVSSRATHLFLSNNSLRWLRGVEAFSGVVCLSISHNLVRRTEDLHPLSLLAHLETLSLEGNPVCGAANYRAHVVSLTSACLKTLDGREVIYGETSDAAAIVAAERSATNKTSREHCLCLLLHHMSRLLECH 489
+G +++AVGK I L VP VS+ T L+LS N+LR L G++ F+ V LSI NL+ ++ L+ LA L L+L GNPVC NYR +++ + L+ LD +V E + A I A + + + ++ H L +++L+ H
Sbjct: 74 DGARLNAVGKGIHLLGYVPPTVSASITALYLSQNNLRSLEGIDQFAAVRLLSIGGNLISSDMEVERLTELAQLRNLNLMGNPVCDLPNYRLRAIAILTK-LQVLDNADVTKKERALAPDIAAQDHALRSMVTQNHFNIQKLQRIAQLISLH 223
BLAST of mRNA_Ecto-sp13_S_contig146.3528.1 vs. uniprot
Match: A0A329SNP0_9STRA (Uncharacterized protein n=1 Tax=Phytophthora cactorum TaxID=29920 RepID=A0A329SNP0_9STRA) HSP 1 Score: 85.5 bits (210), Expect = 8.620e-15 Identity = 51/151 (33.77%), Postives = 84/151 (55.63%), Query Frame = 1
Query: 37 EGLKVSAVGKHITSLEGVPSGVSSRATHLFLSNNSLRWLRGVEAFSGVVCLSISHNLVRRTEDLHPLSLLAHLETLSLEGNPVCGAANYRAHVVSLTSACLKTLDGREVIYGETSDAAAIVAAERSATNKTSREHCLCLLLHHMSRLLECH 489
+G +++AVGK I +L VP VS+ T L+LS N+L L G++ FS V LS+ NL+ +++ L+ LA L L+L GNP+C NYR +++L + L+ LD ++ E A + A + + S+ H L +++L+ H
Sbjct: 74 DGARLNAVGKGIHALGRVPPTVSASITALYLSQNNLLSLEGIDQFSAVRLLSVGGNLISSDKEVARLNELAQLRNLNLMGNPLCDQPNYRLRIIALLTK-LQVLDNSDITKRERDTAPHVAAQDNALRTMVSQNHFDIQKLQRIAQLILLH 223
BLAST of mRNA_Ecto-sp13_S_contig146.3528.1 vs. uniprot
Match: A0A225WXC1_9STRA (LRRcap domain-containing protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225WXC1_9STRA) HSP 1 Score: 85.5 bits (210), Expect = 8.820e-15 Identity = 60/168 (35.71%), Postives = 86/168 (51.19%), Query Frame = 1
Query: 37 EGLKVSAVGKHITSLEGVPSGVSSRATHLFLSNNSLRWLRGVEAFSGVVCLSISHNLVRRTEDLHPLSLLAHLETLSLEGNPVCGAANYRAHVVSLTSACLKTLDGREVIYGETSDAAAIVAAERSATNKTSREHCLCLLLHHMSRLLECHAELREALLEAGSGCSTG 540
+G +++AVGK I SL VP + + T L+LS N+LR L GVE FS V LS+ NL+ +L LS L L L+L GNP+C NYR VV+L L+ LD +V E A A + + H L +++L+ H E ++ +G +TG
Sbjct: 5 DGARLNAVGKSIHSLGHVPPTICASVTALYLSQNNLRALEGVEQFSVVRLLSVGGNLIASDTELARLSELRQLRNLNLVGNPLCDQPNYRLRVVALLPK-LQVLDNCDVTKKERDAAPHAAAQDNALRMMVMHNHFDIQKLQRIAQLISFHKEFYGCVM---AGVATG 168 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig146.3528.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig146.3528.1 >prot_Ecto-sp13_S_contig146.3528.1 ID=prot_Ecto-sp13_S_contig146.3528.1|Name=mRNA_Ecto-sp13_S_contig146.3528.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=301bp QVLRTVGGLVGGEGLKVSAVGKHITSLEGVPSGVSSRATHLFLSNNSLRWback to top mRNA from alignment at Ecto-sp13_S_contig146:483..2784- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig146.3528.1 ID=mRNA_Ecto-sp13_S_contig146.3528.1|Name=mRNA_Ecto-sp13_S_contig146.3528.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2302bp|location=Sequence derived from alignment at Ecto-sp13_S_contig146:483..2784- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig146:483..2784- >mRNA_Ecto-sp13_S_contig146.3528.1 ID=mRNA_Ecto-sp13_S_contig146.3528.1|Name=mRNA_Ecto-sp13_S_contig146.3528.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=903bp|location=Sequence derived from alignment at Ecto-sp13_S_contig146:483..2784- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |