mRNA_Ecto-sp13_S_contig14593.3524.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig14593.3524.1
Unique NamemRNA_Ecto-sp13_S_contig14593.3524.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig14593.3524.1 vs. uniprot
Match: D7FYD1_ECTSI (GLOBIN domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYD1_ECTSI)

HSP 1 Score: 170 bits (431), Expect = 3.720e-52
Identity = 83/103 (80.58%), Postives = 92/103 (89.32%), Query Frame = 1
Query:    1 KRLFKGVNMEEQGAKLMKVLGVAVMMLNNLDHFKPMLVKPGRKHVAYGVMDDMYPSLVSALLITLEKGLGEECHQETKDAWTWVMNAIAAVCIAAAREERGEP 309
            K LFK V+ME+QGAKLMKV+GVAVMML+ +D FKPMLVK G+KHV YGV DDMYPS+VSALLITLEKGLGEECHQ TKDAW WVMN+IAAVCIAAARE+ G P
Sbjct:   46 KPLFKDVDMEKQGAKLMKVIGVAVMMLDKMDQFKPMLVKLGKKHVTYGVTDDMYPSVVSALLITLEKGLGEECHQLTKDAWAWVMNSIAAVCIAAAREDTGAP 148          
BLAST of mRNA_Ecto-sp13_S_contig14593.3524.1 vs. uniprot
Match: D7G782_ECTSI (Globin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G782_ECTSI)

HSP 1 Score: 123 bits (308), Expect = 1.010e-33
Identity = 62/102 (60.78%), Postives = 73/102 (71.57%), Query Frame = 1
Query:    1 KRLFKGVNMEEQGAKLMKVLGVAVMMLNNLDHFKPMLVKPGRKHVAYGVMDDMYPSLVSALLITLEKGLGEECHQETKDAWTWVMNAIAAVCIAAAREERGE 306
            K LFK  +M++QG KLMK LGVAV MLN +D  KP+L   GRKHV YGV  +MYPS+  ALLIT EKGLGEEC   T  AWTWV   I+++CIAAA E + E
Sbjct:   54 KPLFKDTDMDKQGEKLMKTLGVAVAMLNKMDTLKPILENLGRKHVDYGVTPEMYPSVGKALLITFEKGLGEECTPLTTKAWTWVFGIISSICIAAASEVKPE 155          
BLAST of mRNA_Ecto-sp13_S_contig14593.3524.1 vs. uniprot
Match: A0A6H5K069_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K069_9PHAE)

HSP 1 Score: 105 bits (262), Expect = 4.200e-25
Identity = 52/82 (63.41%), Postives = 62/82 (75.61%), Query Frame = 1
Query:   64 VAVMMLNNLDHFKPMLVKPGRKHVAYGVMDDMYPSLVSALLITLEKGLGEECHQETKDAWTWVMNAIAAVCIAAAREERGEP 309
            +A  + + L+ + P      + HV YGV D+MYPS+VSALLITLEKGLGEECHQ TKDAW WVMN+IAAVCIAAARE+   P
Sbjct:  230 IATSVYDQLEGY-PRKTLVAKVHVTYGVTDNMYPSVVSALLITLEKGLGEECHQLTKDAWAWVMNSIAAVCIAAAREDTRAP 310          
BLAST of mRNA_Ecto-sp13_S_contig14593.3524.1 vs. uniprot
Match: A0A2G2QV97_9GAMM (Hemin receptor n=3 Tax=Porticoccus sp. TaxID=2024853 RepID=A0A2G2QV97_9GAMM)

HSP 1 Score: 87.0 bits (214), Expect = 9.280e-20
Identity = 46/99 (46.46%), Postives = 66/99 (66.67%), Query Frame = 1
Query:    1 KRLFKGVNMEEQGAKLMKVLGVAVMMLNNLDHFKPMLVKPGRKHVAYGVMDDMYPSLVSALLITLEKGLGEECHQETKDAWTWVMNAIAAVCIAAAREE 297
            K LFKG NM EQG KLM+++G AV ML+ LD   P++   G++H+AYGV D  Y ++ SAL+ TL+ GLG+   ++ K+AW      +A+  IAAA +E
Sbjct:   39 KPLFKG-NMREQGKKLMEMIGAAVRMLDRLDELVPVVEAMGKRHLAYGVEDAHYDTVGSALIETLQTGLGDGFTEDVKEAWIVAYGILASTMIAAAHKE 136          
BLAST of mRNA_Ecto-sp13_S_contig14593.3524.1 vs. uniprot
Match: A0A451AA85_9GAMM (Hemoglobin-like flavoprotein n=3 Tax=unclassified Candidatus Kentron TaxID=2643149 RepID=A0A451AA85_9GAMM)

HSP 1 Score: 87.0 bits (214), Expect = 9.520e-20
Identity = 48/99 (48.48%), Postives = 65/99 (65.66%), Query Frame = 1
Query:    7 LFKGVNMEEQGAKLMKVLGVAVMMLNNLDHFKPMLVKPGRKHVAYGVMDDMYPSLVSALLITLEKGLGEECHQETKDAWTWVMNAIAAVCIAAAREERG 303
            LF G +M+EQGAKLMK++GVAV  ++ +D     +   GR+HV YGV +  Y ++  ALL TLEKGLG+E   E KDAW  + N +A++   AARE  G
Sbjct:   43 LFTG-DMKEQGAKLMKMIGVAVNAVDEIDTIIEAVRSSGRRHVGYGVEEKHYETVGEALLWTLEKGLGDEFTPEVKDAWAVLYNEVASIMKDAAREVSG 140          
BLAST of mRNA_Ecto-sp13_S_contig14593.3524.1 vs. uniprot
Match: UPI001E29A986 (globin domain-containing protein n=1 Tax=unclassified Blastopirellula TaxID=2647022 RepID=UPI001E29A986)

HSP 1 Score: 86.3 bits (212), Expect = 1.680e-19
Identity = 45/95 (47.37%), Postives = 61/95 (64.21%), Query Frame = 1
Query:    1 KRLFKGVNMEEQGAKLMKVLGVAVMMLNNLDHFKPMLVKPGRKHVAYGVMDDMYPSLVSALLITLEKGLGEECHQETKDAWTWVMNAIAAVCIAA 285
            K LF   +M+EQGAKLMK++G+AV  L+ LD   P +    ++HV YGV  + Y  + +ALL TLEKGLG+    +TK+AWT V   +A   IAA
Sbjct:   39 KPLFAKADMKEQGAKLMKMIGMAVASLDRLDEIMPAVTAMAQRHVEYGVKPEDYQPVGAALLWTLEKGLGDAFTPDTKEAWTTVYTTLAGAMIAA 133          
BLAST of mRNA_Ecto-sp13_S_contig14593.3524.1 vs. uniprot
Match: UPI001444D429 (globin domain-containing protein n=1 Tax=Spongiibacter sp. KMU-166 TaxID=2721624 RepID=UPI001444D429)

HSP 1 Score: 83.6 bits (205), Expect = 2.220e-18
Identity = 47/98 (47.96%), Postives = 64/98 (65.31%), Query Frame = 1
Query:    1 KRLFKGVNMEEQGAKLMKVLGVAVMMLNNLDHFKPMLVKPGRKHVAYGVMDDMYPSLVSALLITLEKGLGEECHQETKDAWTWVMNAIAAVCIAAARE 294
            K +FKG ++EEQG KLM +LG AV  L+NL+   P++ K G +HV YGV    Y ++ +ALL TL  GLGE+   E K+AWT V   +++  IAAA E
Sbjct:   39 KPMFKG-DIEEQGRKLMTMLGTAVRSLDNLEGLVPVVQKLGVRHVGYGVKTSHYATVGTALLDTLAAGLGEDFTPEVKEAWTVVYGVLSSTMIAAADE 135          
BLAST of mRNA_Ecto-sp13_S_contig14593.3524.1 vs. uniprot
Match: A0A7Y4U0B6_9DELT (Hemin receptor n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A7Y4U0B6_9DELT)

HSP 1 Score: 82.8 bits (203), Expect = 4.030e-18
Identity = 44/96 (45.83%), Postives = 65/96 (67.71%), Query Frame = 1
Query:    1 KRLFKGVNMEEQGAKLMKVLGVAVMMLNNLDHFKPMLVKPGRKHVAYGVMDDMYPSLVSALLITLEKGLGEECHQETKDAWTWVMNAIAAVCIAAA 288
            K LF+G +MEEQG +LM+++G AV  L+NL+   P+L   G++HV YGV ++ Y ++ +ALL TL +GLGE    + K+AWT V   +A V + AA
Sbjct:   39 KSLFQG-DMEEQGKRLMEMIGTAVQKLDNLETVVPVLRSLGKRHVRYGVKEEHYQTVGTALLTTLAQGLGEHFTPQVKEAWTLVYGVMADVMMKAA 133          
BLAST of mRNA_Ecto-sp13_S_contig14593.3524.1 vs. uniprot
Match: A0A450YEK8_9GAMM (Hemoglobin-like flavoprotein n=1 Tax=Candidatus Kentron sp. SD TaxID=2126332 RepID=A0A450YEK8_9GAMM)

HSP 1 Score: 82.8 bits (203), Expect = 4.240e-18
Identity = 46/99 (46.46%), Postives = 64/99 (64.65%), Query Frame = 1
Query:    7 LFKGVNMEEQGAKLMKVLGVAVMMLNNLDHFKPMLVKPGRKHVAYGVMDDMYPSLVSALLITLEKGLGEECHQETKDAWTWVMNAIAAVCIAAAREERG 303
            LFK  + +EQGAKLMK++ +AV  L+  +   PM+   GR+HV Y V ++ Y ++ +ALL TL+KGLG+    E KDAWT V   IA++   AARE  G
Sbjct:   42 LFK-TDTKEQGAKLMKMIAMAVNALDEFETAMPMIQSSGRRHVGYDVKEEDYETVGAALLWTLDKGLGDAFTPEVKDAWTAVYGEIASIMKQAAREISG 139          
BLAST of mRNA_Ecto-sp13_S_contig14593.3524.1 vs. uniprot
Match: A0A553KX42_9ALTE (Hemin receptor n=1 Tax=Aliiglaciecola sp. M165 TaxID=2593649 RepID=A0A553KX42_9ALTE)

HSP 1 Score: 82.0 bits (201), Expect = 8.270e-18
Identity = 45/91 (49.45%), Postives = 62/91 (68.13%), Query Frame = 1
Query:    1 KRLFKGVNMEEQGAKLMKVLGVAVMMLNNLDHFKPMLVKPGRKHVAYGVMDDMYPSLVSALLITLEKGLGEECHQETKDAWTWVMNAIAAV 273
            K LFKG +M EQGAKLMK++G+AV  LN+LD   P++   G++HV YGV D+ Y ++  ALL TL +GLG+   QE + AWT     +A+V
Sbjct:   39 KPLFKG-DMTEQGAKLMKMIGMAVNSLNDLDALVPVVQSLGKRHVDYGVEDEHYDTVGEALLWTLGQGLGDAFDQEVEAAWTKTYVTLASV 128          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14593.3524.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FYD1_ECTSI3.720e-5280.58GLOBIN domain-containing protein n=1 Tax=Ectocarpu... [more]
D7G782_ECTSI1.010e-3360.78Globin n=1 Tax=Ectocarpus siliculosus TaxID=2880 R... [more]
A0A6H5K069_9PHAE4.200e-2563.41Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A2G2QV97_9GAMM9.280e-2046.46Hemin receptor n=3 Tax=Porticoccus sp. TaxID=20248... [more]
A0A451AA85_9GAMM9.520e-2048.48Hemoglobin-like flavoprotein n=3 Tax=unclassified ... [more]
UPI001E29A9861.680e-1947.37globin domain-containing protein n=1 Tax=unclassif... [more]
UPI001444D4292.220e-1847.96globin domain-containing protein n=1 Tax=Spongiiba... [more]
A0A7Y4U0B6_9DELT4.030e-1845.83Hemin receptor n=1 Tax=Deltaproteobacteria bacteri... [more]
A0A450YEK8_9GAMM4.240e-1846.46Hemoglobin-like flavoprotein n=1 Tax=Candidatus Ke... [more]
A0A553KX42_9ALTE8.270e-1849.45Hemin receptor n=1 Tax=Aliiglaciecola sp. M165 Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14593contigEcto-sp13_S_contig14593:416..1183 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeBacteria
Stop0
Start1
Seed ortholog score80.9
Seed ortholog evalue3.6e-13
Seed eggNOG ortholog1415778.JQMM01000001_gene1392
Model size309
KEGG koko:K05916
KEGG Pathwayko05132,map05132
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.Globin
EggNOG OGs1JBJY@118884,1PCHM@1224,1SXIV@1236,COG1017@1,COG1017@2
EC1.14.12.17
Cds size285
COG Functional cat.C
Best tax levelunclassified Gammaproteobacteria
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462779.2069151-CDS-Ecto-sp13_S_contig14593:415..5951681462779.2069151-CDS-Ecto-sp13_S_contig14593:415..595Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14593 416..595 -
1681462779.2267199-CDS-Ecto-sp13_S_contig14593:1054..11591681462779.2267199-CDS-Ecto-sp13_S_contig14593:1054..1159Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14593 1055..1159 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462779.236464-UTR-Ecto-sp13_S_contig14593:1159..11831681462779.236464-UTR-Ecto-sp13_S_contig14593:1159..1183Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig14593 1160..1183 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14593.3524.1prot_Ecto-sp13_S_contig14593.3524.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig14593 416..1159 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig14593.3524.1

>prot_Ecto-sp13_S_contig14593.3524.1 ID=prot_Ecto-sp13_S_contig14593.3524.1|Name=mRNA_Ecto-sp13_S_contig14593.3524.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=95bp
MEEQGAKLMKVLGVAVMMLNNLDHFKPMLVKPGRKHVAYGVMDDMYPSLV
SALLITLEKGLGEECHQETKDAWTWVMNAIAAVCIAAAREERGEP
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mRNA from alignment at Ecto-sp13_S_contig14593:416..1183-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig14593.3524.1 ID=mRNA_Ecto-sp13_S_contig14593.3524.1|Name=mRNA_Ecto-sp13_S_contig14593.3524.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=768bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14593:416..1183- (Ectocarpus species13 EcNAP12_S_4_19m)
AAGCGCCTGTTCAAGGGCGTCAACATGGAGGAGCAGGGGGCGAAGCTCAT GAAGGTCCTCGGTGTGGCCGTGATGATGCTAAACAACTTGGACCACTTCA AGCCTATGCTGGTCAAGCCCGGAAGAAAGGTGCGGCTCAAGCATGGTGGC GAGAGTTCAGCGCAGGTTGTCGCTTGCACTCCGAAGCAGCAGACAAGCAG CTGTTTTACCGACCGTTGGTCATGGAACAAGATACGTGAAACGAAGAAAA CACGCCTTGCTCCACTACGGCGGTATCAAAGCAGGCGGTAGAATCTGCTC TGGGGTGGTCAATTTGACTCAGCCCGTGATGCTCGTGAGACACATGACTC GAACGACCATGAGGTCGAAGCATTGGCGTCTGAAACACTTTCCGAATGGG CGGCCTGCAAGGGCGAGAAGTTACATGGATAGGTAAGCAACACATGGTTG AGCAACATAGGATGGACCGAGAAGAATGCTCGGGCCTCCCGATGACGCGT GGTCAATCGTCAAACAGCAAAGGCATGCAAAACATGAGCGTACGCCCCCC CGCGCATGTTTGGTGCCACCTGACCTCACCCACCGCAGCACGTGGCGTAC GGAGTGATGGACGACATGTACCCCTCACTGGTGTCGGCCCTCCTAATCAC CCTTGAGAAGGGGCTGGGCGAGGAGTGCCACCAGGAGACCAAAGACGCCT GGACATGGGTCATGAACGCCATCGCGGCCGTCTGCATCGCCGCCGCCAGG GAAGAGCGGGGAGAACCA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14593:416..1183-

>mRNA_Ecto-sp13_S_contig14593.3524.1 ID=mRNA_Ecto-sp13_S_contig14593.3524.1|Name=mRNA_Ecto-sp13_S_contig14593.3524.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=285bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14593:416..1183- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGAGGAGCAGGGGGCGAAGCTCATGAAGGTCCTCGGTGTGGCCGTGAT
GATGCTAAACAACTTGGACCACTTCAAGCCTATGCTGGTCAAGCCCGGAA
GAAAGCACGTGGCGTACGGAGTGATGGACGACATGTACCCCTCACTGGTG
TCGGCCCTCCTAATCACCCTTGAGAAGGGGCTGGGCGAGGAGTGCCACCA
GGAGACCAAAGACGCCTGGACATGGGTCATGAACGCCATCGCGGCCGTCT
GCATCGCCGCCGCCAGGGAAGAGCGGGGAGAACCA
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