mRNA_Ecto-sp13_S_contig14589.3519.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig14589.3519.1
Unique NamemRNA_Ecto-sp13_S_contig14589.3519.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig14589.3519.1 vs. uniprot
Match: A0A6H5JXP0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXP0_9PHAE)

HSP 1 Score: 244 bits (623), Expect = 1.700e-80
Identity = 130/145 (89.66%), Postives = 135/145 (93.10%), Query Frame = 2 
Query:   59 MEQQTKGHAVATAAAAPAAAQGPRRHGVVDLTPYSSAAVPGTSATGQGGAAAAPPTGRGEANGAPENGVEKKAKPMTRKTPVPLWKARDILLQAVSDSGGESEFLQAHSAFSSIYRGLGRERRSPPVSGEHVGDDVEHVFSIRLE 493
            MEQQTKGHAV   AAA AAAQGPRRHG+VDLTP+SSAA PGTSATGQGGAAAAPP G GEANGAPENGV K+AKP+TRKTPVPLWKARDILLQAVSDSGGESEFLQAHSAFSSIYRG+GRERRSPPVSGE VGDD EHVFSIRLE
Sbjct:    1 MEQQTKGHAVMAVAAAAAAAQGPRRHGLVDLTPHSSAAAPGTSATGQGGAAAAPPEG-GEANGAPENGVGKRAKPITRKTPVPLWKARDILLQAVSDSGGESEFLQAHSAFSSIYRGMGRERRSPPVSGEDVGDDFEHVFSIRLE 144
[Close]
BLAST of mRNA_Ecto-sp13_S_contig14589.3519.1 vs. uniprot
Match: D8LMF2_ECTSI (Similar to Isochorismate Synthase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMF2_ECTSI)

HSP 1 Score: 237 bits (605), Expect = 2.110e-69
Identity = 129/145 (88.97%), Postives = 133/145 (91.72%), Query Frame = 2 
Query:   59 MEQQTKGHAVATAAAAPAAAQGPRRHGVVDLTPYSSAAVPGTSATGQGGAAAAPPTGRGEANGAPENGVEKKAKPMTRKTPVPLWKARDILLQAVSDSGGESEFLQAHSAFSSIYRGLGRERRSPPVSGEHVGDDVEHVFSIRLE 493
            MEQQTK HAV TAAAA  AAQG  RHGVVDLTP+SSAAVP TSATGQGGAAAA PTG  EANGAPENG+EKKAKPMTRKTPVPLWKARDILLQAVSDSGGESEFLQAHSA SSIYRG+GRERRSPPVSG+ VGDDVEHVFSIRLE
Sbjct:    1 MEQQTKVHAV-TAAAAXXAAQGSGRHGVVDLTPHSSAAVPATSATGQGGAAAAAPTGXXEANGAPENGIEKKAKPMTRKTPVPLWKARDILLQAVSDSGGESEFLQAHSALSSIYRGMGRERRSPPVSGDDVGDDVEHVFSIRLE 144
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14589.3519.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JXP0_9PHAE1.700e-8089.66Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LMF2_ECTSI2.110e-6988.97Similar to Isochorismate Synthase n=1 Tax=Ectocarp... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14589contigEcto-sp13_S_contig14589:354..2481 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size497
Hectar predicted targeting categoryother localisation
Exons2
Cds size495
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462778.8056-CDS-Ecto-sp13_S_contig14589:355..7921681462778.8056-CDS-Ecto-sp13_S_contig14589:355..792Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14589 356..792 -
1681462778.8145204-CDS-Ecto-sp13_S_contig14589:2423..24811681462778.8145204-CDS-Ecto-sp13_S_contig14589:2423..2481Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14589 2424..2481 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14589.3519.1prot_Ecto-sp13_S_contig14589.3519.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig14589 356..2481 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig14589.3519.1

>prot_Ecto-sp13_S_contig14589.3519.1 ID=prot_Ecto-sp13_S_contig14589.3519.1|Name=mRNA_Ecto-sp13_S_contig14589.3519.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=165bp
DCNQPRLCWWAVEKRFPTYDGAADEGSRGGDGGGGTGCCPRTQAPRGGRL
DSVFLRRRTRNKCDRARGSCSSTANRTRRSQRGAGERRREKGETDDEKNA
GAAVESQGHPPTGGQRQRRRVGIPPGPLGVFINISGVGEGKKEPSCQRRT
RRGRRGARLLNTARG
back to top

mRNA from alignment at Ecto-sp13_S_contig14589:354..2481-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig14589.3519.1 ID=mRNA_Ecto-sp13_S_contig14589.3519.1|Name=mRNA_Ecto-sp13_S_contig14589.3519.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2128bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14589:354..2481- (Ectocarpus species13 EcNAP12_S_4_19m)
GACTGCAACCAGCCGAGGTTGTGCTGGTGGGCTGTGGAGAAAAGGTTTCC
TACGTACGGTGCGTATCATTTGAACAACGAGTGGCTGAGGGAATGTTGGA
AGCTGTTGCTCCGTTGCTCAACGGCTGCTTGTGGGTAACCGAACTTGTGC
ATGTTTTCAAGCAACTGCTGCTGCTGCTGCTCCTGTAGGCGTATTACGTG
TTGCACCCGAGCACACAGGTACCAAGTGCTCCTGCCACACATCAGTAGTG
AACGACACCGCGCTAGCGATAGTTTTGACTGATACATTGCAATTATTTCG
CAGGCGGCCGTGATCCAGGTTCAAGGCGAGTTGCTGTATCAGTGCATTCC
GTCACTGATGGTAGGTCCTGCTTCTCTGCGGTTAGTATGCGCAGCAGCAG
ACGTCTTATTGAACCCATCCAAAGTGCGGACACGTACAGCAGTATTTAGT
TAGGCAGGCCGCCACTGCTGTGAAACAGGGTGCTGCTGCTGTGTATCTCG
TACCACTGCTGTGGTATGATGGACGTCCGCTCCCGGTATCACATGAATGA
ACAAACTAGTAGTGGCAGGGTTCCAGCCGGACCCATGCGGCTTCGTGGTT
TCGGTGGTAAGACAACGAACAGGAGTATGCACAAGATAAACAGCAGCAAC
CGCTGCGACAGAGCGGAACTGCTGTTACCTGGAGTAAGTATTGCATCTAT
GTTTATATTGGACGTGACTGGTTAATCGTTGGCCTATTTTTGCTGGAAAG
GCAGTATCTGAAGCGAGCTGACTGTTATTGCACAAGAAGATGTGTGCTAC
GGTACATGATACGACACAAGATAACACACCCCCTGGACCGATTTTCAAAG
CTCGATTTATGAACTGCGCCGAAACAGCAGCGGTGAAACCGTCTGGCCAA
GAACTCTCCGAAACATGTCGCTTCGTTTATGCATTCTCTTCGTCGTGGAA
CAATCGAGCTTTGAAAATCGGTTCACGGGGTGTTTTTTTGTGTTATGTAA
GGGAGTAGTATGCTTCCACCAGATCGAAGGCTTTTGGGTCTCACTTCTTT
CTCTGACTTGCGTGTCCTCTCTCCCTGGTGATTGCCGCCGAGGGGGCAGA
GCTTGTAAGTACTGGCGGCGATCGTGTTCTTGGTGATCCAACAGTGATGC
TTATTTTTTTTGTTCAAAAACTCCGCACTGCCGTGTAGTTTGTCCTGCTA
AAGCAAACAACCTCAAGCCTTTGTACAACTGTACCGGCAATTAAAGAGCA
TGCGGGCTCCACCCTACATTAAAACCTTATTATTCTATGTTGGTTTCCTC
AAGGGGGAAATAAGCCGGAAGGGTGTGTGCCGAAGACAAGAGGTTCCCTG
CAGTTGTGCCGCGTTCTGTAGGGATGTCTCAAATGAGAGGTGTTTCGGAA
TTAGGGACTTCGAAATATGGGTAATTTCGAAGAGCCTGCGAAGCAGGTGC
TGTTCTACACCAAATTTTTATTTTCGGACGGCCGGGCAAAGGCTGAGTTG
TTCTCCGGAACTTGCTCGAAATGTCCCGAAGCAAGTGGAGACCTTCGTAC
ATCTTTCACCCTCAGGTCCACCCTATGACGTCACATGCACAGCGGCAGCA
CGGGCGGCCCCTTTCGATGTGGCACCGGCTAACTTCTTGTTCCCTGCGTT
ATCTTGTTTCCCGTGTATTGTACGTATTGTTGCGCGAAGATGGAGCAGCA
GACGAAGGGTCACGCGGTGGCGACGGCGGCGGCGGCACCGGCTGCTGCCC
AAGGACCCAGGCGCCACGGGGTGGTCGACTTGACTCCGTATTCCTCCGCC
GCCGTACCAGGAACAAGTGCGACAGGGCAAGGGGGAGCTGCAGCAGCACC
GCCAACAGGACGAGGAGAAGCCAACGGGGCGCCGGAGAACGGCGTCGAGA
AAAAGGCGAAACCGATGACGAGAAAAACGCCGGTGCCGCTGTGGAAAGCC
AGGGACATCCTCCTACAGGCGGTCAGCGACAGCGGCGGCGAGTCGGAATT
CCTCCAGGCCCACTCGGCGTTTTCATCAATATATCGGGGGTTGGGGAGGG
AAAGAAGGAGCCCTCCTGTCAGCGGCGAACACGTCGGGGACGACGTGGAG
CACGTCTTCTCAATACGGCTAGAGGTGC
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14589:354..2481-

>mRNA_Ecto-sp13_S_contig14589.3519.1 ID=mRNA_Ecto-sp13_S_contig14589.3519.1|Name=mRNA_Ecto-sp13_S_contig14589.3519.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=495bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14589:354..2481- (Ectocarpus species13 EcNAP12_S_4_19m)
GACTGCAACCAGCCGAGGTTGTGCTGGTGGGCTGTGGAGAAAAGGTTTCC
TACGTACGATGGAGCAGCAGACGAAGGGTCACGCGGTGGCGACGGCGGCG
GCGGCACCGGCTGCTGCCCAAGGACCCAGGCGCCACGGGGTGGTCGACTT
GACTCCGTATTCCTCCGCCGCCGTACCAGGAACAAGTGCGACAGGGCAAG
GGGGAGCTGCAGCAGCACCGCCAACAGGACGAGGAGAAGCCAACGGGGCG
CCGGAGAACGGCGTCGAGAAAAAGGCGAAACCGATGACGAGAAAAACGCC
GGTGCCGCTGTGGAAAGCCAGGGACATCCTCCTACAGGCGGTCAGCGACA
GCGGCGGCGAGTCGGAATTCCTCCAGGCCCACTCGGCGTTTTCATCAATA
TATCGGGGGTTGGGGAGGGAAAGAAGGAGCCCTCCTGTCAGCGGCGAACA
CGTCGGGGACGACGTGGAGCACGTCTTCTCAATACGGCTAGAGGT
back to top